Combining the advantages of high efficiency, low-pressure drop, and large throughput, the pore array-enhanced tube-in-tube microchannel (PA-TMC) is a promising microreactor for industrial applications. However, most of the mass transfer takes place in the upstream pore region, while the contribution of the downstream annulus is limited. In this work, helical wires were introduced into the annulus by adhering to the outer surface of the inner tube. Mixing behavior and mass transfer of liquid–liquid two-phase flow in PA-TMC with different helical wires have been systematically studied by a combination of experiments and volume of fluid (VOF) method. The introduction of helical wires improves the overall volumetric mass transfer coefficient KLa by up to 133% and the mass transfer efficiency E by up to 117%. The simulation results show that the helical wire brings extra phase mixing regions and increases the specific interface area, while accelerating the fluid flow and expanding the area of enhanced turbulent dissipation rate. Influences of helical wires in various configurations are compared by the comprehensive index I concerning the pressure drop and mass transfer performance simultaneously and a new correlation between KLa and specific energy consumption φ is proposed. This research deepens the understanding of the mixing behavior and mass transfer in the PA-TMCs and provides practical experience for the process intensification of microchannel reactors.