DNA and core histones form dense 30 nm chromatin fibers in vitro. The order of nucleosome stacking drives the folding of 30 nm fibers and may control enzymatic accessibility of the linker DNA in vivo. The energy and dynamics of nucleosome stacking are not well quantified. Here, we investigated nucleosome stacking by pulling on reconstituted chromatin fibers with magnetic tweezers. The force extension traces of fibers are well described as transition between a Hookean spring representing the 30 nm fiber and a worm like chain representing a bead-on-a string conformation. The results show that nucleosome stacking is reversible and force dependent. We measure a stacking energy of 17kBT and an unstacking distance that indicates the full exposure of the linker DNA. The time traces at constant force between 3.5 pN and 6.0 pN show that multiple nucleosome unstacking and restacking events take place simultaneously and non-cooperatively. The salt dependence of unstacking suggests competition between monovalent ions and divalent ions. These experiments provide the first single molecule data on nucleosome stacking and define a dynamic framework for chromatin organization in higher order structures.
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