Duckweed has attracted increasing attention as a high-quality and sustainable novel plant-based protein source. However, little research has been conducted in dogs and cats. We evaluated the effects of inclusion of duckweed protein (Lemna; MCSelect; Parabel; Vero Beach, FL) primarily in replacement of pea protein in dog diets at 0%, 5%, and 10% and cat diets at %, 10%, and 15% on stool quality, nutrient digestibility, and palatability. We hypothesized that duckweed protein would be a viable protein source in both dog and cat diets by showing no detriment to nutritional outcomes. All feeding tests were conducted at an independent research facility (Susquehanna, PA). A standard 2-bowl palatability test over a 2-d period was conducted with adult animals (n = 30 each) to determine intake ratio between test diets (duckweed-containing diets) and control diets (0% duckweed protein). Apparent total tract nutrient digestibility was conducted with 18 adult dogs and 21 adult cats (n = 6 to 7 per diet) with 5 d of diet acclimation followed by 5 d of total fecal collection. Stool quality was evaluated on a 1 to 5 scale where 1 = non-formed or diarrhea and 5 = hard, formed. Palatability data were analyzed using paired t-test (daily consumption) and chi-square test (first choice). All other data were analyzed by ANOVA and contrast (SAS version 9.4). For cats, 10% duckweed had greater (P < 0.05) palatability than control, while no difference was observed between 15% duckweed protein and control. For dogs, 5% and 10% duckweed protein had (P < 0.05) lower palatability, demonstrating a preference to control. Both cats and dogs fed duckweed diets had acceptable stool quality (Mean = 3.4 and 3.3, respectively). No detriments in nutrient digestibility were observed in dogs fed 5% and 10% duckweed protein; however, cats fed 10% and 15% duckweed protein had (P < 0.05) lower dry matter, protein, and energy digestibility vs. control. In conclusion, the data collected indicate that duckweed can be a viable replacement for other plant-based proteins in dog diets at inclusion levels up to 10%; more development is needed for duckweed protein inclusion into cat diets.