We have used the TOPAS Geant4-based package to create a parametric simulation of a new TOF-PET scanner design based on a low atomic number scintillator. TOPAS was extended to provide complete information on individual particle position, energy, and identity, allowing access to all particle interactions in the simulation. The data were then used as the ‘truth’ information of particle kinematics for the simulation of the TOF-PET scanner, as described in a separate paper. The Derenzo and XCAT phantoms were added to the simulation with in-patient scattering, positron emission placement, and positron diffusion. Running Geant4 simulations through TOPAS requires substantially smaller amounts of user training than would be needed in raw Geant4.This paper describes the methods used to simulate the low-Z whole-body scanner at reduced dose. Specifically, this paper covers the simulation of the FDG decay energy spectrum; the simulation of tissue densities, atomic compositions, and radiotracer doses within imaging phantoms with doses; the custom TOPAS extension used to record particle interaction data; computational performance; and required Geant4 libraries used in TOPAS.