Cucumber Tissues Research Articles

Genome-Wide Analysis and Expression Profiling of Glyoxalase Gene Families Under Abiotic Stresses in Cucumber (Cucumis sativus L.)

The glyoxalase pathway, consisting of glyoxalase I (GLYI) and glyoxalase II (GLYII), is an enzymatic system that converts cytotoxic methylglyoxal to non-toxic S-D-lactoylglutathione. Although the GLY gene family has been analyzed in Arabidopsis, rice, grape, cabbage, and soybean, cucumber studies are lacking. Here, we analyzed the cucumber GLY gene family, identifying 13 CsGLYI and 2 CsGLYII genes. Furthermore, we investigated the physicochemical properties, phylogenetic relationships, chromosomal localization and colinearity, gene structure, conserved motifs, cis-regulatory elements, and protein–protein interaction networks of the CsGLY family. They were primarily localized in the cytoplasm, chloroplasts, and mitochondria, with a minor presence in the nucleus. The classification of CsGLYI and CsGLYII genes into five classes closely resembled the homologous genes in Arabidopsis and soybean. Additionally, hormone-responsive elements dominated the promoter region of GLY genes, alongside light- and stress-responsive elements. The predicted interaction proteins of CsGLYIs and CsGLYIIs exerted a significant role in cellular respiration, amino acid synthesis, and metabolism, as well as methylglyoxal catabolism. In addition, the expression profiles of GLY genes were distinct in different tissues of cucumber as well as under diverse abiotic stresses. This study is conducive to the further exploration of the functional diversity among glyoxalase genes and the mechanisms of stress responses in cucumber.

The Role of PLATZ6 in Raffinose Family Oligosaccharides Loading of Leaves via PLATZ Family Characterization in Cucumber

The plant AT protein and zinc-binding protein (PLATZ) genes, a novel cluster of plant-specific zinc-finger-dependent DNA-binding proteins, play a crucial role in regulating stress response and plant development. However, there has been little study focus on the role of the cucumber PLATZ family in assimilating loading in leaves. (1) In this study, a total of 12 PLATZ genes were identified from the cucumber genome. The cucumber PLATZ genes were clustered into five groups, and unevenly distributed on five chromosomes. A single pair of cucumber PLATZ genes underwent segmental duplication. (2) The results of genome-wide expression analysis suggested that the cucumber PLATZ genes were widely expressed in a wide range of cucumber tissues, with three PLATZ (PLATZ2, PLATZ6, and PLATZ12) genes exhibiting high expression in the vascular tissues of cucumber leaves. PLATZ2, PLATZ6, and PLATZ12 proteins were primarily located in cytomembrane and nucleus. (3) In VIGS-PLATZ6 plants, the expression of Galactinol synthase 1 (GolS1) and STACHYOSE SYNTHASE (STS), two genes involved in the synthesis of raffinose family oligosaccharides (RFOs) were observed to be decreased in cucumber leaves. In conclusion, the comprehensive analysis of the cucumber PLATZ family and the preliminary functional verification of PLATZ6 lay the foundation for the molecular and physiological functions of cucumber PLATZ genes.

A comparative study between the efficacy of fertigation and spraying procedures in terms of the content of Cadmium (Cd) and Arsenic (As) in greenhouse cucumber.

A comparative study between fertigation and spraying procedures in terms of the status of Cadmium (Cd) and Arsenic (As) in greenhouse cucumber was conducted as a two-factor split plot based on a randomized complete block design with three replications at the Soil and Water Research Institute, Karaj, Iran in 2023. The main and sub-factors were respectively fertigation and spraying that were used in two levels [the maximum permissible concentration of Cd and As in granular triple super phosphate fertilizer (25ppm Cd and 50ppm As) and the minimum permissible concentration of these metals in granular triple super phosphate fertilizer (5ppm Cd and 5ppm As)]. Spraying was done in three modes (spraying of leaves, leaves and fruit, and fruit). On average, the results showed that the order of the concentration of Cd in plant tissues (DW) was as leaf (0.284mg/kg) > fruit peel (0.102mg/kg) > fruit peel + flesh (0.054mg/kg) > fruit flesh (0.044mg/kg). This order for As was as leaf (0.608mg/kg) > fruit flesh (0.127mg/kg) > fruit peel + flesh (0.109mg/kg) > fruit peel (0.072mg/kg). Based on the measurements, the spraying procedure accumulated more amounts of Cd and As in the fruit (i.e., peel + flesh) than the fertigation procedure. In general, it is concluded that under soilless culture, the status of heavy metals in plant tissues of greenhouse cucumber is related to the nature of the metal, the organ exposed to the metal, and the fertilization procedure. Because there is the risk of contamination of vegetables grown in the areas fertigated and sprayed with poor-quality nutrient solutions in terms of the content of heavy metals, the frequency of fertigation and spraying needs to be monitored continuously for the quality of the vegetables cultivated in greenhouses.

Chemoreceptor MCP4580 of Vibrio splendidus mediates chemotaxis toward L-glutamic acid contributing to bacterial virulence

Chemotaxis has an essential function in flagellar bacteria that allows them to sense and respond to specific environmental signals, enabling their survival and colonization. Vibrio splendidus is an important opportunistic pathogen that infects a wide range of hosts including fish, bivalve, and sea cucumber. Our study demonstrated that V. splendidus AJ01 exhibited chemotaxis toward L-glutamic acid (L-Glu), an abundant amino acid in the intestinal and respiratory tree tissues of the sea cucumber. Bacterial samples collected from two locations in soft agar swimming plates were subjected to RNA-sequencing (RNA-Seq) analysis to identify the methyl-accepting chemotaxis protein (MCP) respond to L-Glu. Among the 40 annotated chemoreceptors, MCP4580 was identified as the MCP that mediates L-Glu-response. Molecular docking and site-directed mutagenesis revealed that L-arginine at residue 81 (R81) and L-glutamine at residue 88 (Q88) in the ligand-binding domain (LBD) are crucial for L-Glu recognition. Bacterial two-hybrid assay (BTH) showed that MCP4580 forms dimers and interacts with the histidine kinase CheA via the coupling protein CheW1 and CheW2. Phosphorylation analysis showed that the binding of L-Glu to MCP4580 results in the inhibition of CheA phosphorylation mainly via CheW1. Notably, sea cucumbers stimulated with each mutant strain of chemotaxis protein exhibited reduced mortality, highlighting the importance of chemotaxis in V. splendidus virulence. The present study provides valuable insights into the molecular components and signal transduction involved in the chemotaxis of V. splendidus toward L-Glu, and highlights the importance of chemotaxis in its virulence.

Genome-Wide Characterization and Expression Analysis of CsPALs in Cucumber (Cucumis sativus L.) Reveal Their Potential Roles in Abiotic Stress and Aphid Stress Tolerance.

Phenylalanine ammonia lyase (PAL) is a pivotal enzyme in the phenylalanine metabolic pathway in plants and has a crucial role in the plant's response to environmental stress. Although the PAL family has been widely studied in many plant species, limited is known about its particular role in cucumbers under stress. We investigated the physicochemical properties, gene structure, gene duplication events, conserved motifs, cis-acting elements, protein interaction networks, stress-related transcriptome data, and quantitatively validated key stress-related genes. The main results indicated that 15 PAL genes were grouped into four clades: I, II, and III when arranged in a phylogenetic tree of PAL genes in angiosperms. The analysis of the promoter sequence revealed the presence of multiple cis-acting elements related to hormones and stress responses in the cucumber PAL genes (CsPALs). The analysis of protein interaction networks suggested that CsPAL1 interacts with eight other members of the PAL family through CsELI5 and CsHISNA, and directly interacts with multiple proteins in the 4CL family. Further investigation into the expression patterns of CsPAL genes in different tissues and under various stress treatments (NaCl, Cu2+, Zn2+, PEG6000, aphids) demonstrated significant differential expression of CsPALs across cucumber tissues. In summary, our characterization of the CsPAL family offers valuable insights and provides important clues regarding the molecular mechanisms of CsPALs in managing abiotic and biotic stress interactions in cucumbers.

Oxylipin biosynthesis via an unprecedented 16-hydroperoxide lyase pathway in green tissues of cucumber (Cucumis sativus L.) plants

The plant lipoxygenase cascade is a source of various regulatory oxylipins that play a role in cell signalling, stress adaptation, and immune response. Recently, we detected an unprecedented 16(S)-lipoxygenase, CsLOX3, in the leaves and fruit pericarp of cucumber (Cucumis sativus L.). In the present work, an array of products biosynthesized through the conversions of α-linolenic acid 16-hydroperoxide (16-HPOT) was detected. Firstly, a prominent 15-hydroxy-9,12-pentadecadienoic acid (Me/TMS) was detected, the product of hydroperoxide lyase (HPL) chain cleavage of 16-HPOT and further reduction of aldehyde 15-oxo-9,12-pentadecadienoic acid to alcohol. Besides, the presence of dicarboxylic acid, 3,6-pentadecadiene-1,15-dioic acid, was deduced from the detection of its catalytic hydrogenation product, pentadecane-1,15-dioic acid. Finally, 12,15-dihydroxypentadecanoic acid (Me/TMS) was detected amongst the hydrogenated products, thus indicating the presence of the parent 12,15-dihydroxy-9,13-pentadecadienoic acid. To confirm the proposed HPL chain cleavage, the 16(S)-HPOT was prepared and incubated with the recombinant cucumber HPL CYP74B6 enzyme. The CYP74B6 possessed high activity towards 16-HPOT. Chain cleavage yields the (9Z,12Z)-15-oxo-9,12-pentadecadienoic acid, undergoing a spontaneous isomerization into (9Z,13E)-15-oxo-9,13-pentadecadienoic acid. Thus, the cucumber plants as well as the recombinant cucumber HPL CYP74B6 possessed unprecedented 16-HPL activity, cleaving 16-HPOT into a C15 fragment, 15-oxo-9,12-pentadecadienoic acid, and a complementary volatile C3 fragment, propionic aldehyde. The 16-LOX/16-HPL route of oxylipin biosynthesis presents a novel facet of the plant LOX pathway.

Characterization of the Apoptotic and Antimicrobial Activities of Two Initiator Caspases of Sea Cucumber Apostichopus japonicus.

Caspase (CASP) is a protease family that plays a vital role in apoptosis, development, and immune response. Herein, we reported the identification and characterization of two CASPs, AjCASPX1 and AjCASPX2, from the sea cucumber Apostichopus japonicus, an important aquaculture species. AjCASPX1/2 share similar domain organizations with the vertebrate initiator caspases CASP2/9, including the CARD domain and the p20/p10 subunits with conserved functional motifs. However, compared with human CASP2/9, AjCASPX1/2 possess unique structural features in the linker region between p20 and p10. AjCASPX1, but not AjCASPX2, induced marked apoptosis of human cells by activating CASP3/7. The recombinant proteins of AjCASPX2 and the CARD domain of AjCASPX2 were able to bind to a wide range of bacteria, as well as bacterial cell wall components, and inhibit bacterial growth. AjCASPX1, when expressed in Escherichia coli, was able to kill the host bacteria. Under normal conditions, AjCASPX1 and AjCASPX2 expressions were most abundant in sea cucumber muscle and coelomocytes, respectively. After bacterial infection, both AjCASPX1 and AjCASPX2 expressions were significantly upregulated in sea cucumber tissues and cells. Together, these results indicated that AjCASPX1 and AjCASPX2 were initiator caspases with antimicrobial activity and likely functioned in apoptosis and immune defense against pathogen infection.

Molecular Cloning and Functional Analysis of Secretory Phospholipase A2 from Apostichopus japonicus.

Secretory phospholipase A2 (sPLA2) plays important roles in phospholipid metabolism, skin barrier maintenance, immune response and other processes in organisms. sPLA2 of sea cucumber A. japonicus (AjPLA2) has not yet been reported. This study successfully amplified the AjPLA2 sequence. The total cDNA of AjPLA2 is 931bp, including a 480bp ORF that encodes 159 amino acids. The AjPLA2 protein includes a 16-aa signal peptide, a 5-aa precursor peptide and a 138-aa mature peptide. Homologous alignment showed that AjPLA2 and the sPLA2s from starfish have the typical domains of the Group IB sPLA2. And additional amino acid sequences were found around the β-Wing, which is different from the Group IB sPLA2. These results showed that AjPLA2 and sPLA2s from starfish all belong to a new group in the Group I sPLA2 family. AjPLA2 is widely distributed in sea cucumber tissues. The functional analysis also showed that AjPLA2 was upregulated in the intestine by feeding. Whenthe body wall was damaged, it was significantly upregulated around the wound. And the expression levels of AjPLA2 were significantly increased in V. splendens-infected sea cucumbers. The results indicated that AjPLA2 plays roles in the sea cucumber immunologicprocess. Combined with the upregulation of unsaturated fatty acids (PUFAs) content in A. japonicus, it demonstrated that AjPLA2 could participate in the immune of A. japonicus by hydrolyzing phospholipid and releasing PUFAs. This study had a solid foundation for the further research of AjPLA2 gene function in vivo, development and application of AjPLA2 protein.

Analysis of proximate, amino acid and fatty acid on Phyrella sp. (sea cucumber) from Demak waters, Central Java, Indonesia

Sea cucumbers are marine organisms that the community has widely used as foodstuffs and medicine. One type of sea cucumber used is Phyrella. This research was conducted to determine the nutritional content (proximate, amino acid, and fatty acid) found in Phyrella sea cucumber to increase knowledge for the public. The procedure used in this study used two stages, including preparing Phyrella sea cucumber tissues and analyzing the proximate content, amino acids, and fatty acids. Phyrella tissues proximate analysis produced the highest values in ash content at 50.94%, protein at 37.28%, carbohydrates at 5.57%, moisture at 5.45%, and fat at 0.77%. The highest essential amino acids are produced by threonine (20195.595±22.380 mg/kg), leucine (17128.75±23.731 mg/kg), and valine (13389.465±18.760 mg/kg), and the lowest is produced by tryptophan (1176.000±0.778 mg/kg). The highest non-essential amino acids are produced by glycine (73405.095±123.058 mg/kg), glutamate acid (45620.42±59.326 mg/kg), and arginine (37542.3±22.840 mg/kg). At the same time, the lowest result was produced by cystine (8818.905±11.929 mg/kg). The results obtained from the highest fatty acids were unsaturated fats (0.3902±0.0051%), saturated fatty acids (0.3798±0.0091%), and polyunsaturated fats (0.23855±0.0025%). Meanwhile, the lowest fatty acid yield was found in erucic acid at 0.0095±0.0003%. The research results indicate that Phyrella sea cucumber can be a food ingredient, as it contains essential nutrients for the body.

Physicochemical and Biochemical Characterization of Collagen from Stichopus cf. horrens Tissues for Use as Stimuli-Responsive Thin Films.

The mutable collagenous tissue (MCT) of sea cucumber, with its ability to rapidly change its stiffness and extensibility in response to different environmental stress conditions, serves as inspiration for the design of new smart functional biomaterials. Collagen, extracted from the body wall of Stichopus cf. horrens, a species commonly found in the Philippines, was characterized for its suitability as stimuli-responsive films. Protein BLAST search showed the presence of sequences commonly found in type VII and IX collagen, suggesting that Stichopus horrens collagen is heterotypic. The maximum transition temperature recorded was 56.0 ± 2 °C, which is higher than those of other known sources of marine collagen. This suggests that S. horrens collagen has better thermal stability and durability. Collagen-based thin films were then prepared, and atomic force microscopy (AFM) imaging showed the visible collagen network comprising the films. The thin films were subjected to thermomechanical analysis with degradation starting at >175 °C. At 100-150 °C, the collagen-based films apparently lose their translucency due to the removal of moisture. Upon exposure to ambient temperature, instead of degrading, the films were able to revert to the original state due to the readsorption of moisture. This study is a demonstration of a smart biomaterial developed from S. cf. horrens collagen with potential applications in food, pharmaceutical, biomedical, and other collagen-based research.

Effects of Scallop Visceral Mass and Mantle as Dietary Supplements on the Growth, Immune Response and Intestinal Microflora of Juvenile Sea Cucumber Apostichopus japonicus.

Scallop visceral mass and mantle are aquatic byproducts and waste, but they have high contents of protein. In this study, scallop visceral mass and mantle were used as supplements in the diet of juvenile sea cucumber (A. japonicus) and their effects on the growth, fatty acid and amino acid compositions, the non-specific immune responses and the intestinal microflora of A. japonicus were investigated through a 40 d feeding experiment. The results showed that dietary supplementation of scallop visceral mass significantly accelerated the specific growth rate (SGR) of juvenile A. japonicus by 3 times within 20 days, and also raised the contents of ω-3 fatty acids including EPA and DHA and the ω-3/ω-6 ratio of the sea cucumber tissue, which is favorable to the health and commercial value of the sea cucumber. Furthermore, it was found that the supplementation of scallop visceral mass and mantle stimulated the expression of immune-related genes and enhanced the immune defense in A. japonicus. Scallop visceral mass and mantle supplementation also increased the microbial diversity and the abundance of beneficial microbes including Bifidobacteriaceae, Streptomycetaceae, Clostridiaceae and Rhizobiales in the gut of A. japonicus. This study reveals the beneficial effects of dietary supplementation of scallop visceral mass and mantle on the growth of juvenile A. japonicus, which might be a promising way to reutilize this scallop waste and raise its economic value.

An improved digestion and analysis procedure for silicon in plant tissue.

Silicon (Si) in plant tissues reduces abiotic and biotic stress, but it is incorporated as silica (SiO2), which is difficult to solubilize for analysis. We modified an oven-induced tissue-digestion and analysis method to improve Si solubilization and validated its accuracy by quantifying the mass-balance recovery of Si from the hydroponic solution and plant tissues of cucumber (Cucumis sativus). Leaf, stem, and root tissues were dried, finely-ground, and digested in 12.5 molar sodium hydroxide at 95°C for 4 hours. Solutions were then acidified with 6 molar hydrochloric acid to achieve a pH below 2 for measurement of Si using the molybdate blue colorimetric method. Interference of phosphorus in the analysis was minimized by increasing the addition of oxalic acid from 0.6 to 1.1 molar. We recovered 101% ± 13% of the expected Si, calculated using mass-balance recovery, in leaf, stem, and root tissues across 15 digestions. This Si recovery was fourteen-fold higher than the standard acid-extraction method and similar to a USDA-ARS alkaline-extraction method. Our procedure offers a low-cost, accurate method for extraction and analysis of Si in plant tissues.

Influence of tomato waste composts on dry matter and heavy metals content in cucumber and summer squash seedlings

ABSTRACT Huge quantities of agricultural waste are available annually in Saudi Arabia, which are not well exploited, leading to large environmental pollution and health problems. The use of different proportions of tomato waste compost (TWC) mixed with commercial peat-moss as a natural, economical, cheap and environmentally friendly fertilizer for fertilizing vegetables is very important, therefore, this study is concerned with investigating and evaluating the dry matter content (DM) and the accumulated heavy metal contents (HMs) in the root and leaf seedlings tissues of cucumber and summer squash plants as a result of using this fertilizer. Five ratios of mixtures (vermiculite: peat moss: TWC by weight) used in the experiment, and the TWC in the mixture represents 0, 5, 10, 15 and 20% (by wieght). The results indicated that, the DM contents in the root and leaf tissues were relatively close between cucumber and summer squash seedlings. However, they were higher in the root than in leaf tissues, particularly under 20% TWC. A TWC application ratio of 20% reduced concentrations of the most HMs in the two vegetable species seedlings due to high EC and pH levels. The amounts of HMs in vegetable species were not high, which proves the that transfer of HMs from the TWC substrate to the seedlings is determined chiefly by metal bioavailability and by a vegetable species. DM, mineral and nutritional quality of vegetable seedlings showed that substrates containing 5% and 10% TWC appeared to be the most suitable growing medium for economic vegetable seedlings; and it is recommended for use in the nursery production. Implications: The idea of this research revolves around the use of different proportions of tomato waste compost in fertilizing cucumber and summer squash seedlings and investigate the effect of this compost on dry matter (DM) and heavy metal (HMs) contents in the root and leaf tissues of the seedlings, and fruit quality of cucumber and summer squash plants.

Effect of vibration and broken cold chain on the evolution of cell wall polysaccharides during fruit cucumber (Cucumis sativus L.) shriveling under simulated transportation

The fruits and vegetables often result in shriveling, which can significantly affect the quality in terms of texture, appearance, and saleable weight during transportation and storage. In this study, fruit cucumbers (Cucumis sativus L.) were subjected to vibration followed by storing them under isothermal and non-isothermal conditions (simulated broken cold chain) for 15 days. Water movement, cell wall polysaccharides and degrading enzymes, cell wall structure of cucumbers were determined. The findings revealed that water initially migrated from the inner pericarp of cucumber. Vibration and broken cold chain damaged the fruit cell wall and cell wall polysaccharides, and increased degrading enzymes, which promoted the water movement from the tissues to the exterior, causing severe shriveling of cucumber. Firmness loss accompanied with cucumber shrivel appeared by as early as 6 days of storage after vibration (5.5 Hz), with decrease of 19.88–29.93 %. However, this phenomenon was not observed in the control cucumber until 12 days after storage with firmness of 8.22 N. Therefore, this study shows that simulated transport vibration and broken cold chain could cause intracellular damage in cucumber tissues, which expedites the process of water loss, degradation of cell wall polysaccharides and shriveling process. The study also reveals that precise temperature control and avoiding vibration of transportation in cold chain logistics of cucumbers are important in maintaining the product quality during storage and transport.

Antioxidant and ACE-Inhibitory Activity of Protein Hydrolysates Produced from Atlantic Sea Cucumber (Cucumaria frondosa).

Atlantic sea cucumber is a benthic marine echinoderm found in Northwest Atlantic waters and is harvested mainly for its body wall. The body wall, along with internal organs and aquaphyrangeal bulb/flower, is a rich source of proteins, where the latter parts are often considered as processing discards. The objective of this research was to produce protein hydrolysates from sea cucumber tissues (body wall, flower, and internal organs) with bioactive properties associated with antioxidants, DNA and LDL cholesterol oxidation inhibition, and angiotensin-I-converting enzyme (ACE) inhibitory effects. The protein hydrolysates were prepared using food-grade commercial enzymes, namely Alcalase, Corolase, and Flavourzyme, individually and in combination, and found that the combination of enzymes exhibited stronger antioxidant potential than the individual enzymes, as well as their untreated counterparts. Similar trends were also observed for the DNA and LDL cholesterol oxidation inhibition and ACE-inhibitory properties of sea cucumber protein hydrolysates, mainly those that were prepared from the flower. Thus, the findings of this study revealed potential applications of sea cucumber-derived protein hydrolysates in functional foods, nutraceuticals, and dietary supplements, as well as natural therapeutics.

Cucumber and salinity

Salinity is becoming more expanded globally. Soil salinity imposes a great challenge for vegetable-crops production in arid and semiarid regions. Cucumber (Cucumis sativus L.) is the fourth most important vegetable crop worldwide. In this review, we discuss the complex network of effects, and the ways cucumber responds to salinity. Salt stress inhibits almost all growth phases and yield components of cucumber. Accumulation of Na+ and/or Cl- ions in cucumber tissues disturbs the absorption of other ions causing ionic imbalance which affect stomatal opening. Nevertheless, high levels of NaCl in soil inhibit water uptake in the root medium exposing cucumber to osmotic stress. Osmotic stress broadly interrupts metabolic pathways by altering enzymatic activity. Both, ionic and osmotic stresses induce ROS amassing in cucumber tissues. ROS directly constrain photosynthesis by decreasing levels of total chlorophyll and degrading PSII as well as corrupting thylakoid membranes. Ultimately, NaCl-induced stress inhibits cucumber seed germination, roots and shoots growth and development, fruit quality and yield production

Physical, chemical, and physiological characterization of the reactions preceding chilling injury–induced cell membrane damage in cucumber

Chilling injury in cucumber is commonly thought to begin with cell membrane damage caused by reactive oxygen species, which results in ion leakage from the tissue. However, additional short-term storage at ambient temperature after cold storage can accelerate the appearance of damage, and the different types of vegetables exhibit distinct symptoms. We hypothesized that cell membrane damage is a secondary reaction, and that preceding responses in the tissue lead to irreversible changes. To explore these responses in cucumber tissue during cold storage, we employed several techniques, including ion leakage measurements, bio-electrochemical impedance spectroscopy, X-ray computed tomography, nuclear magnetic resonance–based metabolite profiling, and transcriptome analysis. Our time-course comparison of different storage conditions (2 °С, 5 °С, 10 °С, and 15 °С for 0–14 d) indicated that several responses preceded detectable ion leakage–associated cell membrane damage. Specifically, the cold-stored samples exhibited abnormal electrolyte distribution and marked changes in metabolite levels and gene expression related to the tricarboxylic acid (TCA) cycle, which is critical for generating energy for homeostasis. Moreover, samples stored at 2 °С followed by 15 °С showed earlier initiation of tissue responses in metabolite and gene expression profiles, suggesting the occurrence of irreversible changes, possibly in the TCA cycle. These findings suggest that the critical response to chilling injury may occur prior to cell membrane damage, likely due to metabolic imbalances in the TCA cycle.

Metrologically sound comparison of trace-metal levels in sea cucumber tissues from different species and habitats

Sea cucumbers are indicators of metal contamination in sea bottoms due to their low mobility and feeding behaviour. Comparing contaminations of specimens from different locations, habitats, and/or organs allows understanding of contamination processes and differences. However, the interpretation of these data is affected by the variability of contamination levels in specimens, the uncertainty of tissue analyses, and the complex correlation of mass fractions estimated by using the same calibration of the used instrumental method of analysis. This work presents a novel tool for the sound comparison of contamination levels of biota where all mentioned factors are considered to produce reliable and undisputable information on the studied system. The Monte Carlo simulation of uncertainty components, affecting the determination of mean contamination levels observed in selected types of tissues, allowed simulating mean contamination differences and determining if these are meaningful. This tool was used to assess the levels of Cd, Cu, Ni and Pb of animals collected in different locations of Sesimbra-Portugal. It was concluded that specimens that selectively consume macroalgae have larger contamination levels than animals feeding on sediment. The gut is the most contaminated organ suggesting intake from feeding is dominant. Three of the analysed animals have Pb mass fractions larger than a maximum admissible value for human consumption of 3 mg kg−1 with a probability larger than 2.5%.

Quality assessment of variable collagen tissues of sea cucumber (Stichopus japonicus) body wall under different heat treatment durations by label-Free proteomics analysis

The microstructure of the body wall, body wall composition, and collagen fibers of sea cucumber (Stichopus japonicus) under different heating times (1 h, 4 h, 12 h, and 24 h) was investigated based on heat treatment at 80 °C. A Label-Free proteomics technique was applied to study the proteomic changes in the body wall of sea cucumbers under 4 and 12 h of heat treatment. Compared with the fresh group, 981 proteins were found to be differentially expressed proteins (DEPs) after heat treatment at 80 °C (4 h), and 1110 DEPs were observed after heat treatment at the same temperature for 12 h. There were 69 DEPs associated with mutable collagenous tissues (MCTs) structures. The results of correlation analysis showed that 55 DEPs were correlated with sensory properties, among which A0A2G8KRV2 was significantly correlated with hardness and SEM image texture features (SEM_Energy, SEM_Correlation, SEM_Homogeneity, and SEM_Contrast). These findings could be conducive to further comprehension of the structural changes and mechanisms of quality loss in the body wall of sea cucumbers at different heat treatment times.

Exploring the Host Range of Rose rosette Virus among Herbaceous Annual Plants.

To study the host range of Rose rosette virus (RRV), we employed crude sap inoculum extracted from RRV-infected roses and the RRV infectious clone. We inoculated plants from the families Solanaceae, Cucurbitaceae, Leguminosae, Malvaceae, Amaranthaceae, and Brassicaceae. Reverse transcription-polymerase chain reaction (RT-PCR) was used to detect RRV in the inoculated plants throughout their growth stages. Interestingly, RRV was detected in the newly developed leaves of tomato, pepper, tobacco, cucumber, squash, zucchini, pumpkin, pea, peanut, soybean, spinach, okra, and Chenopodium spp. The speed of upward advancement of RRV within infected plants was variable between plants as it took two to three weeks for some plant species and up to five weeks in other plant species to emerge in the newest leaves. No severe symptoms were detected on most of the inoculated plants. Chenopodium spp., spinach, cucumber and Nicotiana rustica exhibited either chlorotic or necrotic lesions with variable shapes and patterns on the systemically infected leaves. Double membrane-bound particles of 80-120 nm in diameter were detected by transmission electron microscopy in the infected tissues of cucumber, pepper, and N. benthamiana plants. This finding infers the validity of mechanical inoculation for RRV on a wide range of plants that would serve as potential natural reservoirs.