The level of phosphorylation of the 24 kDa and the 25 kDa light-harvesting chlorophyll a/ b binding protein complex (LHC) II polypeptides in isolated spinach thylakoids has been determined by quantitative SDS-polyacrylamide gel electrophoresis. The time-course of phosphorylation, after correction for the molar abundance of these two polypeptides, shows that (a) the rate of phosphorylation of the 24 kDa polypeptide is at least 3-fold faster compared with the 25 kDa polypeptide, (b) the final extent of phosphorylation for both the polypeptides is very similar, and (c) the final extent of phosphorylation is typically between 0.15 and 0.25 mol phosphate per mol polypeptide. The low extent of phosphorylation is not simply a consequence of inactivation of the kinase and / or LHC II substrate or ATP depletion. These observations suggest that there are at least three different sub-populations of LHC II in isolated thylakoids: (i) phosphorylated ‘mobile’, (ii) phosphorylated ‘PS II-coupled’ and (iii) non-phosphorylated. Furthermore, the reported differences in the specific activity of phosphorylation for the ‘mobile’ and the ‘PS II-coupled’ LHC II sub-populations (Kyle, D.J. et al. (1984) Biochim. Biophys. Acta 765, 89–96) are no longer observed following correction for the non-phosphorylated LHC-II population.