Recently studies postulate that there are two distinct soil water pools, i.e., mobile and immobile soil water (MSW and IMSW), and different soil waters have different mobility to generate runoff. Evaluating the influences of soil thawing on the subsurface mixing between different soil waters is important for understanding subsurface hydrological processes. In this study, the isotopic differences between different soil waters were evaluated in a permafrost-underlain headwater catchment by comparing the variations of stable isotopes and seasonal origin of MSW and bulk soil water (BSW), including both IMSW and MSW. BSW was sampled using soil augering and cryogenic vacuum distillation in thawed and frozen soil layers, and MSW was collected using a zero-tension lysimeter in thawed soil layers. The results show the following: (1) The average δ2H values of MSW, thawed BSW, and frozen BSW were similar during the spring snowmelt period (SSP), this can be attributed to weak evaporation and their similar origin, which is supported by the high line-conditioned excess values and their similar seasonal origin index values. (2) The enriched MSW collected during the SRP compared to the spring MSW and was associated with enriched summer precipitation, and the IMSW experienced strong evaporation during the period from the SSP to the SRP, both leading to enriched summer BSW compared to the spring BSW. (3) The frozen and thawed BSW had very similar isotopic compositions and seasonal origin, indicating the close hydrological connection between them and the important recharge of the melting frozen soil to soil water or runoff. The different freeze–thaw stages and soil moisture conditions controlled the stable isotope variations and mixing of different soil waters, this results in the different mobility of the mobile/immobile soil waters involved in the runoff generation processes during the SRP and the SSP, and therefore these features are useful to verify the isotopes-aided precipitation–runoff models applied in such catchments.
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