Terminal Electron-accepting Processes Research Articles

Stability and Microbial Toxicity of Silver Nanoparticles under Denitrifying Conditions

While the antibacterial effect of silver nanoparticles (AgNPs) on environmentally beneficial microbes has drawn considerable attention, the stability and microbial toxicity of AgNPs in a system where nitrate reduction is the dominant terminal electron-accepting process remain understudied. Here, we explore the impact of citrate-coated AgNPs (cit-AgNPs) on the growth and metabolism of two metal-sensitive and one nonsensitive bacterial strains under denitrifying conditions. Dose-response analysis revealed that in contrast to the bacteriostatic effect exhibited at 1 ppm, 5 ppm cit-AgNPs were bactericidal to the metal-sensitive strains. It was observed that the growth of the cells initiated Ag(I) formation, and the supplement of chloride (2.7 mM) to the cultures substantially mitigated the bactericidal capacity of cit-AgNPs, indicating that AgNP dissolution to ionic Ag(I) played a key role in AgNP toxicity. Abiotic experiments confirmed that nitrite, not nitrate, had the capacity to oxidize cit-AgNPs. Transcriptomic analysis revealed that (i) the gene encoding for membrane stress was upregulated proportionally to cit-AgNP concentrations; (ii) cit-AgNPs and Ag(I) at higher levels upregulated genes involved in oxidative stress and iron-sulfur clusters, whereas expressions of the genes responsible for electron transport, ATP synthesis, and denitrification were substantially repressed; (iii) the addition of chloride significantly altered the level of transcriptional profiles of all of the genes. These results not only provide evidence of abiotic AgNP oxidation by metabolic intermediate nitrogen species but also suggest that AgNPs and Ag(I) may induce differential toxicity modes to prokaryotes. Our findings reinforce the importance of evaluating the potential ecological toxicity and risks associated with the transformation of nanomaterials.

Key factors controlling microbial distribution on a DNAPL source area

Chlorinated solvents are among the common groundwater contaminants that show high complexity in their distribution in the subsoil. Microorganisms play a vital role in the natural attenuation of chlorinated solvents. Thus far, how the in situ soil microbial community responds to chlorinated solvent contamination has remained unclear. In this study, the microbial community distribution within two boreholes located in the source area of perchloroethene (PCE) was investigated via terminal restriction fragment length polymorphism (T-RFLP) and clone library analysis. Microbial data were related to the lithological and geochemical data and the concentration and isotopic composition of chloroethenes to determine the key factors controlling the distribution of the microbial communities. The results indicated that Proteobacteria, Actinobacteria, and Firmicutes were the most abundant phylums in the sediment. The statistical correlation with the environmental data proved that fine granulometry, oxygen tolerance, terminal electron-acceptor processes, and toxicity control microbial structure. This study improves our understanding of how the microbial community in the subsoil responds to high concentrations of chlorinated solvents.

Mercury pollution in the coastal Urmia aquifer in northwestern Iran: potential sources, mobility, and toxicity.

The concentration of total dissolved mercury (HgT) in surface and groundwater resources in the coastal parts of Urmia aquifer (NW of Iran) was investigated to identify the possible sources and sinks of mercury and the geochemical mechanisms controlling its mobilization. The distribution of water samples on the Piper diagram demonstrates that most samples have the Ca-Mg-HCO3 facies. From 62 water samples collected in this area, one sample contained HgT concentrations exceeding the maximum contaminant level recommended by the WHO (6μg/L). The principal component analysis (PCA) produced five principal components. The positive moderate correlation of HgT with EC, Cl, K, Mg, and Na indicated that the weathering of geological formations was one of the main sources of mercury in groundwater samples. Position of water samples in Eh-pH regions where microorganisms involved in mercury methylation and mineralization were potentially active demonstrated that the aquifer had undergone sulfate reduction and had reached the final stage of the terminal electron accepting process (TEAP) sequence in the methane production processes which are limited to only 37% of the water samples that have anaerobic conditions. Some Hg-bearing species are in nonequilibrium geochemical conditions. The supersaturation of water samples with magnetite and goethite indicated that these Fe-bearing minerals could act as the strong reducing agents for the reduction of Hg(II) to Hg(0).

A quantitative redox zonation model for developing natural attenuation-based remediation strategy in hydrocarbon-contaminated aquifers

Natural attenuation (NA) is a cost-effective and sustainable clean up technique for remedying groundwater contaminants, especially hydrocarbons, and redox zonation is a crucial subdivision of NA. However, the present Terminal Electron Acceptor Processes (TEAPs) approach, established in the 1990s, does not adequately determine the redox boundary, and is therefore unsuitable for the updated concept of the redox transition zone (RTZ) gradually confirmed in recent years. To compensate for this shortcoming, the quantitative model, integrating statistical analysis of metabolic consuming electron acceptors with the microbial growth mechanism, was improved. Furthermore, to illustrate the application of this model, one petroleum contaminated site in North China was studied. The redox boundaries of certain electron acceptors were defined as 3.72–32.68, 1.81–6.10, 0.51–1.49 and 85.83–167.62 mg/L, respectively, measured by NO3−, Mn2+, Fe2+ and SO42−. Estimated by TEAPs, groundwater was determined as exhibit sulfate reduction, superimposed with nitrate, manganese, and iron reduction, indicating that RTZs were ubiquitous. Thus, it can be concluded that the model is feasible and, particularly useful for RTZ definition. Additionally, the results imply that the model not only can be used for developing a NA-based remediation strategy in hydrocarbon-contaminated aquifers but also can be applied in other aquifers where the microbial mechanism is similar.

Influence of terminal electron-accepting conditions on the soil microbial community and degradation of organic contaminants of emerging concern

Better understanding of the fate and persistence of trace organic contaminants of emerging concern (CEC) in agricultural soils is critical for assessing the risks associated with using treated wastewater effluent to irrigate crops and land application of wastewater biosolids. This study reports on the influence of prevailing terminal electron-accepting processes (TEAPs, i.e., aerobic, nitrate-reducing, iron(III)-reducing, and sulfate-reducing conditions) and exposure to a mixture of nine trace CEC (90 ng/g each) on both the microbial community structure and CEC degradation in agricultural soil. DNA analysis revealed significant differences in microbial community composition following establishment of different TEAPs, but no significant change upon exposure to the mixture of CEC. The largest community shift was observed after establishing nitrate-reducing conditions and the smallest shift for sulfate-reducing conditions. Two of the CEC (atrazine and sulfamethoxazole) showed significant degradation in both bioactive and abiotic (i.e., sterilized) conditions, with half-lives ranging from 1 to 64 days for different TEAPs, while six of the CEC (amitriptyline, atenolol, trimethoprim, and three organophosphate flame retardants) only degraded in bioactive samples, with half-lives ranging from 27 to 90 days; carbamazepine did not degrade appreciably within 90 days in any of the incubations. Amplicon sequence variants (ASVs) from Firmicutes Hydrogenispora, Gemmatimonadetes Gemmatimonadaceae, and Verrucomicrobia OPB34 soil group were identified as potentially responsible for the biodegradation of organophosphate flame retardants, and ASVs from other taxa groups were suspected to be involved in biodegrading the other target CEC. These results demonstrate that CEC fate and persistence in agricultural soils is influenced by the prevailing TEAPs and their influence on the microbial community, suggesting the need to incorporate these factors into contaminant fate models to improve risk assessment predictions.

Identifying the core bacterial microbiome of hydrocarbon degradation and a shift of dominant methanogenesis pathways in the oil and aqueous phases of petroleum reservoirs of different temperatures from China

Abstract. Microorganisms in petroleum reservoirs play significant roles in hydrocarbon degradation, and through the terminal electron-accepting process of methanogenesis, they also contribute to microbially enhanced oil recovery (MEOR) worldwide, with great economic and environmental benefits. Here, a molecular investigation, using the 16S rRNA and mcrA gene profiles based on MiSeq sequencing and clone library construction methods, was conducted on oil and water (aqueous) phases of samples of high (82–88 ∘C), moderate (45–63 ∘C), and low temperatures (21–32 ∘C) from seven petroleum reservoirs in China. A core bacterial microbiome with a small proportion of shared operational taxonomic unit (OTU) values, but a high proportion of sequences among all reservoirs was discovered, including aerobic degraders, sulfate- and nitrate-reducing bacteria, fermentative bacteria, and sulfur-oxidizing bacteria distributed mainly in Proteobacteria, Bacteroidetes, Deferribacteres, Deinococcus–Thermus, Firmicutes, Spirochaetes, and Thermotogae. Their prevalence in the previously reported petroleum reservoirs and successive enrichment cultures suggests their common roles and functions involved in aliphatic and aromatic hydrocarbon degradation. The methanogenic process generally shifts from the dominant hydrogenotrophic pathway in the aqueous phase to the acetoclastic pathway in the oil phase in high-temperature reservoirs, but the opposite was true for low-temperature reservoirs. No difference was detected between the two phases in moderate temperature reservoirs. Physicochemical factors, including pH; temperature; phase conditions; and nitrate, Mn2+, and Mg2+ concentrations were the main factors correlated to the microbial compositional and functional profiles significantly. Linear discriminant analysis (LDA) effect size (LEfSe) analysis shows distribution differences of microbial groups towards pH, temperature, and the oil and aqueous phases. Using the software Tax4Fun for functional profiling indicated functional metabolism differences between the two phases, including amino acids, hydrocarbons in the oil phase, and carbohydrates in the aqueous phase.

Bio-attenuation of arsenic and iron coupled with nitrate remediation in multi-oxyanionic system: Batch and column studies.

Co-occurrence of arsenic and iron along with nitrate in groundwater makes the trio an onerous combination both in terms of potability and treatment. To meet drinking water guidelines, batch and column laboratory trials were conducted on simulated and bore-well water for attenuation of arsenic (1000 μg/L), iron (5 mg/L) and nitrate (150 mg/L). Increment in sulphate showed a direct individual impact on iron removal, meeting WHO guidelines. The bio-kinetic parameters were in the range of: μmax = 0.079-0.551/d, Ks = 116.18-645.19 mg/L, Kd = 0.0009-0.0077/d and Y = 0.034-0.094 mg MLVSS/mg COD. Transmission electron microscopy (TEM) and X-ray diffraction (XRD) confirmed orpiment precipitation and/or co-precipitation with mackinawite are the key mechanisms for arsenic and iron attenuation. Column experiments were conducted by charging simulated groundwater containing arsenic (500 μg/L), nitrate (50 mg/L), sulphate (25 mg/L) and iron (3 mg/L) in an acetate (105 mg/L as COD) fed flow-through bioreactor at constant empty bed contact time of 60 min. Profile sampling illustrated segregation of different terminal electron accepting zones following thermodynamic yield for sequential removal of different oxyanions. This study showed the importance of considering microbially mediated terminal electron-accepting processes (TEAP) for multi-oxyanion removal in engineered systems.

Combined use of ISCR and biostimulation techniques in incomplete processes of reductive dehalogenation of chlorinated solvents

Pools of chloroethenes are more recalcitrant in the transition zone between aquifers and basal aquitards than those elsewhere in the aquifer. Although biodegradation of chloroethenes occur in this zone, it is a slow process and a remediation strategy is needed. The aim of this study was to demonstrate that combined strategy of biostimulation and in situ chemical reduction (ISCR) is more efficient than the two separated strategies. Four different microcosm experiments with sediment and groundwater of a selected field site where an aged perchloroethene (PCE)-pool exists at the bottom of a transition zone, were designed under i) natural conditions, ii) biostimulation with lactic acid, iii) in situ chemical reduction (ISCR) with zero valent iron (ZVI) and under iv) a combined strategy with lactic acid and ZVI. Biotic and abiotic dehalogenation, terminal electron acceptor processes and evolution of microbial communities were investigated for each experiment. The main results where: i) limited reductive dehalogenation of PCE occurs under sulfate-reducing conditions; ii) biostimulation with lactic acid promotes a more pronounced reductive dehalogenation of PCE in comparison under natural conditions, but resulted in an accumulation of cis-dichloroethene (cDCE); iii) ISCR with zero-valent iron (ZVI) facilitates a sustained dehalogenation of PCE and its metabolites to non-halogenated products, however, the iv) combined strategy results in the fastest and sustained dehalogenation of PCE to non-halogenated products in comparison of all four set-ups. These findings suggest that biostimulation and ISCR with ZVI are the most suitable strategy for a complete reductive dehalogenation of PCE-pools in the transition zone.

Dichloromethane biodegradation in multi-contaminated groundwater: Insights from biomolecular and compound-specific isotope analyses

Dichloromethane (DCM) is a widespread and toxic industrial solvent which often co-occurs with chlorinated ethenes at polluted sites. Biodegradation of DCM occurs under both oxic and anoxic conditions in soils and aquifers. Here we investigated in situ and ex situ biodegradation of DCM in groundwater sampled from the industrial site of Themeroil (France), where DCM occurs as a major co-contaminant of chloroethenes. Carbon isotopic fractionation (εC) for DCM ranging from −46 to −22‰ were obtained under oxic or denitrifying conditions, in mineral medium or contaminated groundwater, and for laboratory cultures of Hyphomicrobium sp. strain GJ21 and two new DCM-degrading strains isolated from the contaminated groundwater. The extent of DCM biodegradation (B%) in the aquifer, as evaluated by compound-specific isotope analysis (δ13C), ranged from 1% to 85% applying DCM-specific εC derived from reference strains and those determined in this study. Laboratory groundwater microcosms under oxic conditions showed DCM biodegradation rates of up to 0.1 mM·day−1, with concomitant chloride release. Dehalogenase genes dcmA and dhlA involved in DCM biodegradation ranged from below 4 × 102 (boundary) to 1 × 107 (source zone) copies L−1 across the contamination plume. High-throughput sequencing on the 16S rrnA gene in groundwater samples showed that both contaminant level and terminal electron acceptor processes (TEAPs) influenced the distribution of genus-level taxa associated with DCM biodegradation. Taken together, our results demonstrate the potential of DCM biodegradation in multi-contaminated groundwater. This integrative approach may be applied to contaminated aquifers in the future, in order to identify microbial taxa and pathways associated with DCM biodegradation in relation to redox conditions and co-contamination levels.

How sequential reduction of terminal electron acceptors modulates nitrification and dynamics of nitrifying bacteria and archaea in a tropical vertisol

AbstractNitrification potential of a tropical vertisol saturated with water was estimated during sequential reduction of nitrate (NO3−), ferric iron (Fe3+), sulphate (SO42−) and carbon dioxide (CO2) in terminal electron-accepting processes (TEAPs). In general, the TEAPs enhanced potential nitrification rate (PNR) of the soil. Nitrification was highest at Fe3+reduction followed by SO42−reduction, NO3−reduction and lowest in unreduced control soil. Predicted PNR correlated significantly with the observed PNR. Electron donor Fe2+stimulated PNR, while S2−inhibited it significantly. Terminal-restriction fragment length polymorphism targeting theamoAgene of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) highlighted population dynamics during the sequential reduction of terminal electron acceptors. Only the relative abundance of AOA varied significantly during the course of soil reduction. Relative abundance of AOB correlated with NO3−and Fe2+. Linear regression models predicted PNR from the values of NO3−, Fe2+and relative abundance of AOA. Principal component analysis of PNR during different reducing conditions explained 72.90% variance by PC1 and 19.52% variance by PC2. Results revealed that AOA might have a significant role in nitrification during reducing conditions in the tropical flooded ecosystem of a vertisol.

Hydrogenation of organic matter as a terminal electron sink sustains high CO2:CH4 production ratios during anaerobic decomposition

Once inorganic electron acceptors are depleted, organic matter in anoxic environments decomposes by hydrolysis, fermentation, and methanogenesis, requiring syntrophic interactions between microorganisms to achieve energetic favorability. In this classic anaerobic food chain, methanogenesis represents the terminal electron accepting (TEA) process, ultimately producing equimolar CO2 and CH4 for each molecule of organic matter degraded. However, CO2:CH4 production in Sphagnum-derived, mineral-poor, cellulosic peat often substantially exceeds this 1:1 ratio, even in the absence of measureable inorganic TEAs. Since the oxidation state of C in both cellulose-derived organic matter and acetate is 0, and CO2 has an oxidation state of +4, if CH4 (oxidation state −4) is not produced in equal ratio, then some other compound(s) must balance CO2 production by receiving 4 electrons. Here we present evidence for ubiquitous hydrogenation of diverse unsaturated compounds that appear to serve as organic TEAs in peat, thereby providing the necessary electron balance to sustain CO2:CH4>1. While organic electron acceptors have previously been proposed to drive microbial respiration of organic matter through the reversible reduction of quinone moieties, the hydrogenation mechanism that we propose, by contrast, reduces CC double bonds in organic matter thereby serving as (1) a terminal electron sink, (2) a mechanism for degrading complex unsaturated organic molecules, (3) a potential mechanism to regenerate electron-accepting quinones, and, in some cases, (4) a means to alleviate the toxicity of unsaturated aromatic acids. This mechanism for CO2 generation without concomitant CH4 production has the potential to regulate the global warming potential of peatlands by elevating CO2:CH4 production ratios.

Chemical evolution of groundwater in the Wilcox aquifer of the northern Gulf Coastal Plain, USA

The Wilcox aquifer is a major groundwater resource in the northern Gulf Coastal Plain (lower Mississippi Valley) of the USA, yet the processes controlling water chemistry in this clastic aquifer have received relatively little attention. The current study combines analyses of solutes and stable isotopes in groundwater, petrography of core samples, and geochemical modeling to identify plausible reactions along a regional flow path ∼300 km long. The hydrochemical facies evolves from Ca-HCO3 upgradient to Na-HCO3 downgradient, with a sequential zonation of terminal electron-accepting processes from Fe(III) reduction through SO4 2− reduction to methanogenesis. In particular, decreasing SO4 2− and increasing δ34S of SO4 2− along the flow path, as well as observations of authigenic pyrite in core samples, provide evidence of SO4 2− reduction. Values of δ13C in groundwater suggest that dissolved inorganic carbon is contributed both by oxidation of sedimentary organic matter and calcite dissolution. Inverse modeling identified multiple plausible sets of reactions between sampled wells, which typically involved cation exchange, pyrite precipitation, CH2O oxidation, and dissolution of amorphous Fe(OH)3, calcite, or siderite. These reactions are consistent with processes identified in previous studies of Atlantic Coastal Plain aquifers. Contrasts in groundwater chemistry between the Wilcox and the underlying McNairy and overlying Claiborne aquifers indicate that confining units are relatively effective in limiting cross-formational flow, but localized cross-formational mixing could occur via fault zones. Consequently, increased pumping in the vicinity of fault zones could facilitate upward movement of saline water into the Wilcox.

Predominant terminal electron accepting processes during organic matter degradation: Spatio-temporal changes in Ashtamudi estuary, Kerala, India

Anaerobic microbial communities in the anoxic zones degrade organic matter in estuarine sediments. Thermodynamic energy yield for the oxidation reactions with various electron acceptors decreases in the order of O2> NO3- > Mn4+> Fe3+> SO42- > CO2. The predominant terminal electron accepting (TEA) process has an influence on the biogeochemical cycles of nutrients as well as the production of important greenhouse gases such as nitrous oxide and methane from estuarine sediments. The research questions of this study were (1) what are the environmental factors (pH, salinity, organic carbon, sulphate, redox potential) explaining variability in TEA activities such as nitrate reduction rate (NRR), iron reduction rate (IRR), sulphate reduction rate (SRR) and methane production rate (MPR) and (2) which is the predominant TEA process during degradation of organic matter. To determine the TEA activities, sediment samples collected from 13 sampling stations of Ashtamudi estuary during monsoon 2014 and summer 2015 were incubated with sulphate depleted artificial seawater, under anaerobic conditions for 72 h, in microcosms. Spatial variations dominated temporal variations for environmental variables. Nevertheless, biogeochemical processes showed a distinct seasonal variation. Total TEA activity was higher during summer than monsoon, indicating the higher heterotrophic microbial activity favored by high temperature. Individually, SRR was the maximum during summer, while NRR, IRR and MPR were the maximum during monsoon. Sulphate reduction was observed to be the predominant electron accepting process in all sampling stations with cumulative values of 3125.79 and 4046.07 nmol cm-3 day-1 during monsoon and summer respectively. This was followed by NRR, IRR and MPR. Although thermodynamically more favorable, NRR could not predominate due to scarcity of nitrate in sediments. Nevertheless, two-fold and five-fold increase in methanogenesis and denitrification were observed respectively during monsoon in sampling stations, which cannot be ignored, owing to the importance of methane and nitrous oxide as a potent greenhouse gas.

Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion.

Corrosion processes in two North Sea oil production pipelines were studied by analyzing pig envelope samples via metagenomic and metabolomic techniques. Both production systems have similar physico-chemical properties and injection waters are treated with nitrate, but one pipeline experiences severe corrosion and the other does not. Early and late pigging material was collected to gain insight into the potential causes for differential corrosion rates. Metabolites were extracted and analyzed via ultra-high performance liquid chromatography/high-resolution mass spectrometry with electrospray ionization (ESI) in both positive and negative ion modes. Metabolites were analyzed by comparison with standards indicative of aerobic and anaerobic hydrocarbon metabolism and by comparison to predicted masses for KEGG metabolites. Microbial community structure was analyzed via 16S rRNA gene qPCR, sequencing of 16S PCR products, and MySeq Illumina shotgun sequencing of community DNA. Metagenomic data were used to reconstruct the full length 16S rRNA genes and genomes of dominant microorganisms. Sequence data were also interrogated via KEGG annotation and for the presence of genes related to terminal electron accepting (TEA) processes as well as aerobic and anaerobic hydrocarbon degradation. Significant and distinct differences were observed when comparing the ‘high corrosion’ (HC) and the ‘low corrosion’ (LC) pipeline systems, especially with respect to the TEA utilization potential. The HC samples were dominated by sulfate-reducing bacteria (SRB) and archaea known for their ability to utilize simple carbon substrates, whereas LC samples were dominated by pseudomonads with the genetic potential for denitrification and aerobic hydrocarbon degradation. The frequency of aerobic hydrocarbon degradation genes was low in the HC system, and anaerobic hydrocarbon degradation genes were not detected in either pipeline. This is in contrast with metabolite analysis, which demonstrated the presence of several succinic acids in HC samples that are diagnostic of anaerobic hydrocarbon metabolism. Identifiable aerobic metabolites were confined to the LC samples, consistent with the metagenomic data. Overall, these data suggest that corrosion management might benefit from a more refined understanding of microbial community resilience in the face of disturbances such as nitrate treatment or pigging, which frequently prove insufficient to alter community structure toward a stable, less-corrosive assemblage.

Activation of an Otherwise Silent Xylose Metabolic Pathway in Shewanella oneidensis.

Shewanella oneidensis is unable to metabolize the sugar xylose as a carbon and energy source. In the present study, an otherwise silent xylose catabolic pathway was activated in S. oneidensis by following an adaptive evolution strategy. Genome-wide scans indicated that the S. oneidensis genome encoded two proteins similar to the xylose oxido-reductase pathway enzymes xylose reductase (SO_0900) and xylulokinase (SO_4230), and purified SO_0900 and SO_4230 displayed xylose reductase and xylulokinase activities, respectively. The S. oneidensis genome was missing, however, an Escherichia coli XylE-like xylose transporter. After 12 monthly transfers in minimal growth medium containing successively higher xylose concentrations, an S. oneidensis mutant (termed strain XM1) was isolated for the acquired ability to grow aerobically on xylose as a carbon and energy source. Whole-genome sequencing indicated that strain XM1 contained a mutation in an unknown membrane protein (SO_1396) resulting in a glutamine-to-histidine conversion at amino acid position 207. Homology modeling demonstrated that the Q207H mutation in SO_1396 was located at the homologous xylose docking site in XylE. The expansion of the S. oneidensis metabolic repertoire to xylose expands the electron donors whose oxidation may be coupled to the myriad of terminal electron-accepting processes catalyzed by S. oneidensis Since xylose is a lignocellulose degradation product, this study expands the potential substrates to include lignocellulosic biomass. The activation of an otherwise silent xylose metabolic system in Shewanella oneidensis is a powerful example of how accidental mutations allow microorganisms to adaptively evolve. The expansion of the S. oneidensis metabolic repertoire to xylose expands the electron donors whose oxidation may be coupled to the myriad of terminal electron-accepting processes catalyzed by S. oneidensis Since xylose is a lignocellulose degradation product, this study expands the potential substrates to include lignocellulosic biomass.

How methane feedback response influence redox processes in a tropical vertisol

It has been predicted that soil CH4 consumption potential will increase due to rise in concentration of atmospheric CH4. However, it is unclear how this altered activity of soil will influence soil biogeochemical processes. Experiments were carried out to examine the effect of CH4 feedback response on (1) CH4 consumption potential, (2) population dynamics of methanotrophs, and (3) reductive biogeochemical processes in a tropical vertisol. Soils of different CH4 consumption potentials were prepared by three CH4 feeding cycles. Soils were then incubated to determine terminal electron accepting process (TEAPs) comprising sequential reduction of terminal electron acceptors (NO3 −, Fe3+, SO4 2−, and CO2). Diversity of methanotrophs was estimated by terminal restriction fragment length polymorphism (TRFLP) targeting the pmoA gene. Methane feedback increased apparent CH4 consumption rate (k) from 0.49 to 1.09 μg CH4 consumed per gram of soil. Potential denitrification rate (PDR), potential iron reduction rate (PIR), potential sulfate reduction rate (PSR) increased with k (p < 0.0001). Abundance of methanotrophs and heterotrophs was positively and significantly correlated with k (p < 0.0001). Methane feedback cycle influenced composition of the methanotrophs community (p < 0.0001). Principal component analysis (PCA) explained 83.86 and 12.05 % of variation by first two components.

Hydrogen Utilization Potential in Subsurface Sediments.

Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific, and Gulf of Mexico) with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product, or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material. We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i) increasing importance of fermentation in successively deeper biogeochemical zones and (ii) adaptation of H2ases to successively higher concentrations of H2 in successively deeper zones.

Bioreduction of iodate in sediment microcosms

AbstractIodine-129 is a high-yield fission product formed in nuclear reactors and is a risk-driving radionuclide in both contaminated land and radioactive waste disposal due to its high mobility and long half-life. Here, the bioreduction behaviour of iodate was investigated by tracking iodine speciation and concentration in solution during the development of progressive anoxia in sediment microcosm experiments incubated at neutral pH. Experiments with acetate added as an electron donor showed the expected cascade of terminal electron-accepting processes. Analysis of solution chemistry showed reduction of iodate to iodide during the early stages of metal (Mn(IV) and Fe(III)) reduction, but with no significant retention of iodine species on solids. There was, however, a net release of natural iodine associated with the sediments to solution when robust iron reduction / sulfate reduction had developed. In addition, over 210 days, the controls with no electron donor and the sterile controls showed no Mn(IV) or Fe(III) reduction but displayed modest sorption of iodate to the sediments in the absence of bioreduction. Overall these results show that under oxic conditions iodate may be partially sorbed to sediments over extended periods but that development of mildly reducing conditions leads to the reductive release of iodine to solution as iodide.

Distribution of iron- and sulfate-reducing bacteria across a coastal acid sulfate soil (CASS) environment: implications for passive bioremediation by tidal inundation.

Coastal acid sulfate soils (CASS) constitute a serious and global environmental problem. Oxidation of iron sulfide minerals exposed to air generates sulfuric acid with consequently negative impacts on coastal and estuarine ecosystems. Tidal inundation represents one current treatment strategy for CASS, with the aim of neutralizing acidity by triggering microbial iron- and sulfate-reduction and inducing the precipitation of iron-sulfides. Although well-known functional guilds of bacteria drive these processes, their distributions within CASS environments, as well as their relationships to tidal cycling and the availability of nutrients and electron acceptors, are poorly understood. These factors will determine the long-term efficacy of “passive” CASS remediation strategies. Here we studied microbial community structure and functional guild distribution in sediment cores obtained from 10 depths ranging from 0 to 20 cm in three sites located in the supra-, inter- and sub-tidal segments, respectively, of a CASS-affected salt marsh (East Trinity, Cairns, Australia). Whole community 16S rRNA gene diversity within each site was assessed by 454 pyrotag sequencing and bioinformatic analyses in the context of local hydrological, geochemical, and lithological factors. The results illustrate spatial overlap, or close association, of iron-, and sulfate-reducing bacteria (SRB) in an environment rich in organic matter and controlled by parameters such as acidity, redox potential, degree of water saturation, and mineralization. The observed spatial distribution implies the need for empirical understanding of the timing, relative to tidal cycling, of various terminal electron-accepting processes that control acid generation and biogeochemical iron and sulfur cycling.

Reductive Dechlorination of Trichloroethylene (TCE) in Competition with Fe and Mn Oxides—Observed Dynamics in H2-dependent Terminal Electron Accepting Processes

The determination of hydrogen (H2) concentration together with the products of microbial reduction reactions in a trichloroethylene dechlorinating system is conducted to delineate the ongoing predominant terminal electron accepting processes (TEAP). Formate was used as electron donor and synthetic Fe minerals or environmental samples were used as the substrate. Iron(III) and Mn(IV) reduction limited microbial dechlorination by the mixed anaerobic culture by decreasing the level of H2 in the system. The H2 measurements indicated that the H2 concentration at which different TEAPs occur can overlap and thus these TEAPs can therefore occur concurrently rather than exclusively. Difference in Fe(III) bioavailability and hence, Fe(III) reduction partially explain this wide range. The distinction between dechlorination and other microbial reduction processes based on H2 threshold values is not feasible under such conditions, though there appears to be a relation between the rates of H2 consuming process and the observed H2 level.