Abstract We present a new ensemble of 36 numerical experiments aimed at comprehensively gauging the sensitivity of nested large-eddy simulations (LES) driven by large-scale dynamics. Specifically, we explore 36 multiscale configurations of the Weather Research and Forecasting (WRF) Model to simulate the boundary layer flow over the complex topography at the Perdigão field site, with five nested domains discretized at horizontal resolutions ranging from 11.25 km to 30 m. Each ensemble member has a unique combination of the following input factors: (i) large-scale initial and boundary conditions, (ii) subgrid turbulence modeling in the gray zone of turbulence, (iii) subgrid-scale (SGS) models in LES, and (iv) topography and land-cover datasets. We probe their relative importance for LES calculations of velocity, temperature, and moisture fields. Variance decomposition analysis unravels large sensitivities to topography and land-use datasets and very weak sensitivity to the LES SGS model. Discrepancies within ensemble members can be as large as 2.5 m s−1 for the time-averaged near-surface wind speed on the ridge and as large as 10 m s−1 without time averaging. At specific time points, a large fraction of this sensitivity can be explained by the different turbulence models in the gray zone domains. We implement a horizontal momentum and moisture budget routine in WRF to further elucidate the mechanisms behind the observed sensitivity, paving the way for an increased understanding of the tangible effects of the gray zone of turbulence problem. Significance Statement Several science and engineering applications, including wind turbine siting and operations, weather prediction, and downscaling of climate projections, call for high-resolution numerical simulations of the lowest part of the atmosphere. Recent studies have highlighted that such high-resolution simulations, coupled with large-scale models, are challenging and require several important assumptions. With a new set of numerical experiments, we evaluate and compare the significance of different assumptions and outstanding challenges in multiscale modeling (i.e., coupling large-scale models and high-resolution atmospheric simulations). The ultimate goal of this analysis is to put each individual assumption into the wider perspective of a realistic problem and quantify its relative importance compared to other important modeling choices.
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