The aim of the present study was the gas and liquid chromatography detection of residues of flusilazole, carbendazime, tebuconazole and triadimefon-based fungicides in flour and bran produced from the grain of four varieties of wheat treated with two fungicides. When the fungicide Alert was applied in the 1–2-node stages of stem development, flusilazole could be detected in the flour of two wheat varieties. In the bran, no flusilazole residues were detected in any of the varieties. When treatment was carried out in a later phenophase (after development of the flag leaf and at the beginning of heading) no flusilazole residue was detected in the flour of any wheat variety. The active substance of the fungicide Folicur Bt EC 225 (tebuconazole) was detected in the flour of only one wheat variety and in the bran of three varieties when the fungicide treatment was applied in the 1–2-node stages of stem development. When the fungicide treatment was carried out after the development of the flag leaf, at the beginning of heading, no tebuconazole residue was detected in the flour or the bran. The other active substance of Alert is carbendazime, and the other active substance of Folicur Bt EC 225 is triadimefon: their residues were not detected in the flour and bran.