Tea Rhizosphere Research Articles

Evaluating Native Bacillus Strains as Potential Biocontrol Agents against Tea Anthracnose Caused by Colletotrichum fructicola

Anthracnose of the tea plant (Camellia sinensis), caused by Colletotrichum spp., poses a significant threat to both the yield and quality of tea production. To address this challenge, researchers have looked to the application of endophytic bacteria as a natural alternative to the use chemical pesticides, offering potential for enhancing disease resistance and abiotic stress tolerance in tea plants. This study focused on identifying effective microbial agents to combat tea anthracnose caused by Colletotrichum fructicola. A total of 38 Bacillus-like strains were isolated from the tea rhizosphere, with 8 isolates showing substantial inhibitory effects against the mycelial growth of C. fructicola, achieving an average inhibition rate of 60.68%. Among these, strain T3 was particularly effective, with a 69.86% inhibition rate. Through morphological, physiological, and biochemical characterization, along with 16S rRNA gene phylogenetics analysis, these strains were identified as B. inaquosorum (T1 and T2), B. tequilensis (T3, T5, T7, T8, and T19), and B. spizizenii (T6). Biological and molecular assays confirmed that these strains could induce the expression of genes associated with antimicrobial compounds like iturin, fengycin, subtilosin, and alkaline protease, which effectively reduced the disease index of tea anthracnose and enhanced tea plant growth. In conclusion, this study demonstrates that B. inaquosorum, B. tequilensis, and B. spizizenii strains are promising biocontrol agents for managing tea anthracnose.

Protease enzymes from Pseudomonas fluorescens and Pseudomonas aeruginosa as potential bioagents against Pratylenchus loosi

Root lesion nematode of tea (Pratylenchus loosi) is one of the most dangerous and destructive pests in all areas of the world where tea grows. Rhizobacteria with nematicidal properties were screened using the soils of root lesion nematode-infected tea fields located in Guilan province, Iran. Effective bacteria were identified based on molecular and biochemical methods. Protease enzyme production was investigated on skim milk agar (1%) medium. The effects of temperature and pH on the amount of protease production by bacteria were investigated. Three protease inhibitors, namely PMSF, EDTA and 1,10-phenanthroline, were investigated. In total, 150 bacterial strains were isolated from tea rhizosphere using the spread-plating technique and nutrient agar medium, of which four bacterial isolates of Pseudomonas spp. had nematicidal properties in the range of 84.98% to 95.24%. Two of the bacterial isolates, RH25 (Pseudomonas aeruginosa) and RH37 (Pseudomonas fluorescens), had the largest clear zone of proteolysis on skim milk agar and were subjected to various biochemical tests. The influences of time (1 to 120 h), temperature (22 to 37°C) and pH (7.0 to 8.5) were investigated in the production of protease. The highest enzyme production was obtained from growing RH37 and RH25 on mineral medium when incubated at temperatures of 26°C and 30°C for 72 and 96 h and at initial pH values of 7.2 and 7.6, respectively. Proteases obtained from RH37 (P. fluorescens) belonged to the metalloprotease and serine protease families and the one produced by RH25 (P. aeruginosa) was a metalloprotease. According to the results of this research, the most effective control mechanism of these bacteria against nematodes is the production of bacterial protease. This mechanism can be exploited to control nematodes.

Exploring the dynamics of ISR signaling in maize upon seed priming with plant growth promoting actinobacteria isolated from tea rhizosphere of Darjeeling.

Plant growth-promoting rhizobacteria (PGPR) offer an eco-friendly alternative to agrochemicals for better plant growth and development. Here, we evaluated the plant growth promotion abilities of actinobacteria isolated from the tea (Camellia sinensis) rhizosphere of Darjeeling, India. 16S rRNA gene ribotyping of 28 isolates demonstrated the presence of nine different culturable actinobacterial genera. Assessment of the in vitro PGP traits revealed that Micrococcus sp. AB420 exhibited the highest level of phosphate solubilization (i.e., 445 ± 2.1µg/ml), whereas Kocuria sp. AB429 and Brachybacterium sp. AB440 showed the highest level of siderophore (25.8 ± 0.1%) and IAA production (101.4 ± 0.5µg/ml), respectively. Biopriming of maize seeds with the individual actinobacterial isolate revealed statistically significant growth in the treated plants compared to controls. Among them, treatment with Paenarthrobacter sp. AB416 and Brachybacterium sp. AB439 exhibited the highest shoot and root length. Biopriming has also triggered significant enzymatic and non-enzymatic antioxidative defense reactions in maize seedlings both locally and systematically, providing a critical insight into their possible role in the reduction of reactive oxygen species (ROS) burden. To better understand the role of actinobacterial isolates in the modulation of plant defense, three selected actinobacterial isolates, AB426 (Brevibacterium sp.), AB427 (Streptomyces sp.), and AB440 (Brachybacterium sp.) were employed to evaluate the dynamics of induced systemic resistance (ISR) in maize. The expression profile of five key genes involved in SA and JA pathways revealed that bio-priming with actinobacteria (Brevibacterium sp. AB426 and Brachybacterium sp. AB440) preferably modulates the JA pathway rather than the SA pathway. The infection studies in bio-primed maize plants resulted in a delay in disease progression by the biotrophic pathogen Ustilago maydis in infected maize plants, suggesting the positive efficacy of bio-priming in aiding plants to cope with biotic stress. Conclusively, this study unravels the intrinsic mechanisms of PGPR-mediated ISR dynamics in bio-primed plants, offering a futuristic application of these microorganisms in the agricultural fields as an eco-friendly alternative.

Understanding the Molecular Mechanism of PGPR Strain Priestia megaterium from Tea Rhizosphere for Stress Alleviation and Crop Growth Enhancement

The study aimed to assess the plant growth-promoting (PGP) capabilities and abiotic stress tolerance of strain IHB B 7164 with a focus on identifying associated genes through genomic analysis. Isolated from the tea rhizosphere, strain underwent screening for multiple PGP traits and stress tolerance against various abiotic factors. Taxonogenomic analysis of the complete genome identified the bacterium as Priestia megaterium exhibiting high similarity (97.04 % ANI, 74.3 % in silico DDH) to P. megaterium ATCC 14581. Functional annotations of the genome highlighted gene clusters associated with PGP traits and stress tolerance substantiating the strain's potential in promoting plant growth under stress conditions. The strain demonstarted robust growth and PGP activities under stressed culture conditions such as acidity, temperature fluctuations, desiccation, salinity, and exposure to calcium, aluminum, and iron salts, affirming its status as a stress-tolerant rhizobacterium. Screening of PGP traits under acidic conditions revealed phosphate solubilization, ACC-deaminase activity and production of IAA-like auxins. Notably gluconic and oxalic acids were consistently detected during solubilization of tri-calcium phosphate (TCP), aluminum phosphate (Al-P), and iron phosphate (Fe-P). Inoculation with the strain led to significant enhancements in tea nursery plants including a 9 % increase in plant height, 10 % increase in leaf number, and substantial improvements in leaf fresh and dry weights. Similarly, pea and wheat yields recorded notable increases of 16.9 % and 18.3 %, respectively under field conditions. These findings underscore the efficacy of P. megaterium strain IHB B 7164 as an abiotic stress-tolerant and broad-spectrum plant growth promoting rhizobacteria (PGPR) capable of enhancing plant growth and productivity across diverse agricultural settings.

Elevated Temperature and Carbon Dioxide alter the Tea Rhizosphere Soil Dynamics

Elevated Temperature and Carbon Dioxide alter the Tea Rhizosphere Soil Dynamics

Biocontrol potential of rhizospheric fungi against Rigidoporus microporus, the causal agent of white root rot disease in tea plants

White root rot disease (WRD), caused by Rigidoporus microporus, poses a serious threat to various tropical trees, resulting in substantial crop damage and even plant death. However, there is still a lack of information regarding WRD in tea plants. Due to soil-borne in nature, synthetic fungicide is not recommended to control WRD. Therefore, biocontrol using natural microorganisms found in the tea's rhizosphere has been explored as a potential solution. This study aimed to identify rhizospheric fungi of tea plants with antagonistic properties that can be used as a biocontrol agent against R. microporus. The study involved a field survey and laboratory works had been conducted in a tea plantation at Rancabali, West Java and the Phytopathology Laboratory, Faculty of Agriculture, Universitas Padjadjaran from March to October 2021. The disease incidence and severity were assessed in three blocks of land representing different topographic conditions of the plantation while antagonism tests were conducted using the completely randomized design and dual culture method. The results showed that the highest occurrence of WRD was in the central part of the hill with the disease incidence and severity of 70 and 50%, respectively. Thirteen fungal isolates were obtained from the rhizosphere of tea plants, all of which were found to inhibit the growth of R. microporus. These isolates belonged to the genera of Trichoderma, Gliocladium, Paecilomyces, Penicillium, Aureobasidium, Acremonium and Rhizopus. The considerable inhibition of R. microporus colony growth was performed by the isolates of Aureobasidium sp. (51.23%), Rhizopus sp. (50%), and Trichoderma sp. (43.96%). The results suggested that rhizospheric fungi of tea plants have the potential as biocontrol agents against R. microporus.

Insights into the functional role of Actinomycetia in promoting plant growth and biocontrol in tea (Camellia sinensis) plants.

Tea, a highly aromatic and globally consumed beverage, is derived from the aqueous infusion of dried leaves of Camellia sinensis (L.) O. Kuntze. Northeast India, encompassing an expansive geographical area between 24° and 27°N latitude and 88° and 95°E longitude, is a significant tea-producing region covering approximately 312,210 hectares. Despite its prominence, this region faces persistent challenges owing to a conducive climate that harbors the prevalence of pests, fungal pathogens, and weeds, necessitating agrochemicals. Helopeltis theivora, Oligonychus coffeae, and Biston suppressaria are prominent among the tea pests in this region. Concurrently, tea plants encounter fungal infections such as blister blight, brown root rot, and Fusarium dieback. The growing demand for safer tea production and the need to reduce pesticide and fertilizer usage has spurred interest in exploring biological control methods. This review focuses on Actinomycetia, which potentially safeguards plants from diseases and pest infestations by producing many bioactive substances. Actinomycetia, which resides in the tea rhizosphere and internal plant tissues, can produce antagonistic secondary metabolites and extracellular enzymes while promoting plant growth. Harnessing the biocontrol potential of Actinomycetia offers a promising solution to enhance tea production, while minimizing reliance on harmful agrochemicals, contributing to a more environmentally conscious and economically viable tea cultivation system.

Effects of Organic and Inorganic Fertilizer on the Population Dynamics of Soil Microorganisms in Tea Rhizosphere at Kericho, Kenya

Aim: The long-term cultivation of tea (Camellia sinensis L.) alters microorganism communities in the rhizosphere; it can increase saprotrophs, pathogenic microorganisms and reduce symbiotrophs. Fertilizers are sources of plant essential nutrients and can influence the activity and population of soil microorganisms. This study aimed to determine the effect of fertilization regimes on the population dynamics of soil microorganisms in the tea rhizosphere for its management.
 Place and Duration: The study was carried out at the Tea Research Institute, Kericho, Kenya during the dry (February-March) and wet season (June-July).
 Methodology: Two main fertilizer types; organic (Phymix) and inorganic (Nitrogen, Phosphorus and Potassium- NPK) and foliar fertilizer (Tecamin Max, Tecnokel Amino Mix) as sub treatments application at the rate of 0, 75 and 150 kg N ha-1), were applied in four replications. Sampling of soil was done before treatment application, during the dry season (February-March) and the wet season (June-July). The fungal and bacterial populations for both seasons were characterized. The data collected was analyzed using SAS (version 9) Statistical Software.
 Results: The study showed that the fungal colony units varied significantly (P≤0.05) between the types of fertilizer both during dry and rainy season. The interactions of fertilizer type and rate also varied significantly (P≤0.05) for fungal populations during both seasons. No significant variation was noted for the bacterial population (cfu) for both seasons regardless of fertilizer type and rates. The fungi identified included; Cylindrocarpon spp., Trichoderma spp., Penicillium spp., Aspergillus spp. Colletotrichum spp., Pestalotiopsis spp., and Fusarium spp. The bacteria included; Pseudomonas spp., Bacillus spp., Rhizobium spp., and Xanthomonas spp.
 Conclusion: Organic fertilizer increased fungal populations significantly, an indication of enhanced soil health and may be recommended for use.

A Review on Rhizosphere Microbiota of Tea Plant (Camellia sinensis L): Recent Insights and Future Perspectives.

Rhizosphere microbial colonization of the tea plant provides many beneficial functions for the host, But the factors that influence the composition of these rhizosphere microbes and their functions are still unknown. In order to explore the interaction between tea plants and rhizosphere microorganisms, we summarized the current studies. First, the review integrated the known rhizosphere microbial communities of tea tree, including bacteria, fungi, and arbuscular mycorrhizal fungi. Then, various factors affecting tea rhizosphere microorganisms were studied, including: endogenous factors, environmental factors, and agronomic practices. Finally, the functions of rhizosphere microorganisms were analyzed, including (a) promoting the growth and quality of tea trees, (b) alleviating biotic and abiotic stresses, and (c) improving soil fertility. Finally, we highlight the gaps in knowledge of tea rhizosphere microorganisms and the future direction of development. In summary, understanding rhizosphere microbial interactions with tea plants is key to promoting the growth, development, and sustainable productivity of tea plants.

Coordination of Root Traits and Rhizosphere Microbial Community in Tea (Camellia sinensis L.) Plants under Drought and Rehydration

Soil drought and rehydration have an immense impact on plant physiology and productivity, whereas the response of plant–microbe interactions to varied water availability remains largely elusive. In this study, two tea (Camellia sinensis L.) cultivars, Longjing43 and Yingshuang, were subjected to drought followed by rehydration. Soil drought significantly induced the elongation of taproots in the Yingshuang cultivar after two weeks of drought. Moreover, the four-week drought significantly reduced the root dry mass and root nitrogen, phosphorus, and potassium concentrations in both tea cultivars. Two-week rehydration recovered the root potassium concentration in the two tea cultivars, revealing the rapid response of root potassium levels to water conditions. Drought and rehydration also resulted in shifts in rhizosphere microbial diversity. A four-week drought reduced microbial alpha diversity in Longjing43 but not in the Yingshuang cultivar, and rehydration was effective in restoring alpha diversity in Longjing43. The rhizosphere microbial community tended to recover to the initial stages after rehydration in Longjing43 but not in the other cultivar. In addition, 18 microbial genera were identified as the featured microbial taxa in response to varied water availability, and a rare genus Ignavibacterium was significantly increased in the Longjing43 cultivar by rehydration after a four-week drought. Furthermore, root nitrogen, phosphorus, potassium levels, and dry mass were positively correlated with the microbial alpha diversity, while the taproot length was negatively correlated, suggesting the crucial role of plant–microbe interactions in response to drought and rehydration. Moreover, the root phosphorus concentration and taproot length also had significant effects on microbial beta diversity, further confirming their effects on the community structure of the rhizosphere microbiome. Overall, this study provides insights into the effects of drought on plant–microbe interactions in the rhizosphere of tea plants. These findings are important for harnessing the roles of the tea rhizosphere microbiome under drought.

Enzymatic fermentation of rapeseed cake significantly improved the soil environment of tea rhizosphere

BackgroundRapeseed cake is an important agricultural waste. After enzymatic fermentation, rapeseed cake not only has specific microbial diversity but also contains a lot of fatty acids, organic acids, amino acids and their derivatives, which has potential value as a high-quality organic fertilizer. However, the effects of fermented rapeseed cake on tea rhizosphere microorganisms and soil metabolites have not been reported. In this study, we aimed to elucidate the effect of enzymatic rapeseed cake fertilizer on the soil of tea tree, and to reveal the correlation between rhizosphere soil microorganisms and nutrients/metabolites.ResultsThe results showed that: (1) The application of enzymatic rapeseed cake increased the contents of soil organic matter (OM), total nitrogen (TN), total phosphorus (TP), available nitrogen (AN), and available phosphorus (AP); increased the activities of soil urease (S-UE), soil catalase (S-CAT), soil acid phosphatase (S-ACP) and soil sucrase (S-SC); (2) The application of enzymatic rapeseed cake increased the relative abundance of beneficial rhizosphere microorganisms such as Chaetomium, Inocybe, Pseudoxanthomonas, Pseudomonas, Sphingomonas, and Stenotrophomonas; (3) The application of enzymatic rapeseed cake increased the contents of sugar, organic acid, and fatty acid in soil, and the key metabolic pathways were concentrated in sugar and fatty acid metabolisms; (4) The application of enzymatic rapeseed cake promoted the metabolism of sugar, organic acid, and fatty acid in soil by key rhizosphere microorganisms; enzymes and microorganisms jointly regulated the metabolic pathways of sugar and fatty acids in soil.ConclusionsEnzymatic rapeseed cake fertilizer improved the nutrient status and microbial structure of tea rhizosphere soil, which was beneficial for enhancing soil productivity in tea plantations. These findings provide new insights into the use of enzymatic rapeseed cake as an efficient organic fertilizer and expand its potential for application in tea plantations.

Improve tea quality by enhancing the stability of bacterial community interaction and nitrogen-fixing function in pecan-tea interplanted plantation

Using the 16 S rDNA high-throughput sequencing, the effects of interplanted pecan (Carya illinoinensis) in a typical tea (Camellia sinensis) plantation on soil bacterial species composition and marker species were comparatively analyzed to determine whether nested pecan increases soil microbial diversity in the tea tree rhizosphere. We explored the effects of the underlying mechanisms of this complex ecosystem on tea quality by determining soil physicochemical properties using two types of planting modes: intercropping with pecan versus tea tree monoculture. Our results showed that Rhizobium (Allorhizobium, Neorhizobium, Pararhizobium, and Rhizobium), and Enterobacter, had pollution-degrading effects and were enriched in the soil bacterial communities of the pecan interplanted model. There was a significant enrichment of prebiotic functional bacteria, such as Pedosphaeraceae and Coriobateriaceae_UCG-002, which stimulate plant growth and improve disease resistance, while the functions of Chloroflexi and Firmicutes, which are dominant denitrifying bacteria in the soil, were inhibited. The average degree of soil microbial co-occurrence network increased from 13.40 to 18.17, and the number of nodes in the network increased from 117 to 166, indicating that the network increased in complexity and decreased in mutual exclusivity, and the complex interactions among bacterial populations tended to be stable. The intercropping mode reduced the phenol/ammonia ratio in tea from 2.37 to 1.38, improving the tea quality. Therefore, the soil microbial community composition under this complex model promotes material cycling in microecosystems and effectively reduces the transmission risk of soil-borne diseases. The soil microbial community structure of the tea rhizosphere could be re-balanced and shifted toward a more favorable tea quality formation by the introduction of pecan into tea plantations.

Quorum sensing activities and genomic insights of plant growth-promoting rhizobacteria isolated from Assam tea.

Secretion of quorum sensing (QS) molecules is important for the effective colonization of host plants by plant growth-promoting rhizobacteria. The current study aims at the isolation and characterization of tea rhizo bacteria, which produce the QS molecules, acyl homoserine lactone (AHLs), along with multiple plant growth-promoting (PGP) activities. Thirty-one isolates were isolated from the tea rhizosphere, and screening for PGP activities resulted in the selection of isolates RTE1 and RTE4 with multiple PGP traits, inhibiting the growth of tea fungal pathogens. Both isolates also showed production of AHL molecules when screened using two biosensor strains, Chromobacterium violaceum CV026 and Escherichia coli MT 102(jb132). The isolates identified as Burkholderia cepacia RTE1 and Pseudomonas aeruginosa RTE4 based on genome-based analysis like phylogeny, dDDH, and fastANI calculation. Detailed characterization of AHLs produced by the isolates using reverse-phase TLC, fluorometry, and LC-MS indicated that the isolate RTE1 produced a short chain, C8, and a long chain C12 AHL, while RTE4 produced short-chain AHLs C4 and C6. Confocal microscopy revealed the formation of thick biofilm by RTE1 and RTE4 (18 and 23μm, respectively). Additionally, we found several genes involved in QS, and PGP, inducing systemic resistance (ISR) activities such as lasI/R, qscR, pqq, pvd, aldH, acdS, phz, Sod, rml, and Pch, and biosynthetic gene clusters like N-acyl homoserine lactone synthase, terpenes, pyochelin, and pyocyanin. Based on the functional traits like PGP, biofilm formation and production of AHL molecules, and genetic potential of the isolates B. cepacia RTE1 and P. aeruginosa RTE4 appear promising candidates to improve the health and growth of tea plantations.

Metabolomics analysis of the effect of acidification on rhizosphere soil microecosystem of tea tree.

Acidification can seriously affect the growth of tea trees and the yield and quality of tea leaves. In this study, we analyzed the effects of acidification on the physicochemical properties, microorganisms and metabolites of tea rhizosphere soils with different pH values, and the results showed that with the increase of soil pH, the organic matter content, cation exchange capacity, microbial biomass carbon, microbial biomass nitrogen, microbial respiration intensity, bacterial number and actinomyces number in tea rhizosphere soil all showed an increasing trend, while the fungi number decreased. The results of soil metabolite analysis showed that 2376, 2377 and 2359 metabolites were detected in tea rhizosphere soil with pH values of 3.29, 4.74 and 5.32, respectively, and the number of similar compounds reached 2331, accounting for more than 98%. The results of soil metabolite content analysis showed that with the increase of soil pH, the total contents of metabolite of tea rhizosphere soil increased significantly. The results of correlation analysis between physicochemical indexes of soil and microorganisms and soil metabolites showed that physicochemical indexes of soil and microorganisms were significantly correlated with 221 soil metabolites, among which 55 were significantly positively correlated and 166 were significantly negatively correlated. Based on correlation interaction network analysis, 59 characteristic compounds were obtained and divided into 22 categories, among which 7 categories compounds showed a significant increasing trend with the increase of soil pH, while the other 15 categories compounds showed the opposite trend. Based on the functional analysis of characteristic metabolites, this study found that with the increase of soil pH in tea rhizosphere, the diversity and number of soil microorganisms increased, and the cyclic ability of C and N of tea rhizosphere soil was enhanced, which in turn might lead to the enhancement of resistance of tea tree and promote the growth of tea tree.

Functional traits and phylogenetic analysis of top-soil inhabiting rhizobacteria associated with tea rhizospheres in North Bengal, India

Rhizobacteria associated with cultivated crops are known to stimulate plant growth through various indirect or direct mechanisms. In recent years, the host list of plant growth promotion/promoting rhizobacteria has expanded to include bean, barley, cotton, maize, rice, vegetables, peanut, rice, wheat, and several plantation crops. However, interaction of rhizobacteria with tea plants of organic and conventional tea gardens is poorly understood. In the present study, rhizobacterial species associated with tea rhizosphere were isolated from 14 tea gardens located in North Bengal, India. In total, 16 rhizobacterial isolates isolated from collected soil samples were assessed for antagonistic and plant growth promotion/promoting activity under laboratory conditions. Molecular characterization based on sequencing of 16S rRNA gene revealed dominance of Bacillus with five species followed by Pseudomonas with two species. Interestingly, only one isolate was affiliated with actinobacteria, i.e., Microbacterium barkeri. Out of 16 isolates, isolates Bacillus subtilis OKAKP01, B. subtilis BNLG01, B. paramycoides BOK01, M. barkeri BPATH02, and Stenotrophomonas maltophilia BSEY01 showed highest growth inhibition against Fusarium solani (68.2 to 72.8%), Pseudopestalotiopsis theae (71.1 to 85.6%), and Exobasidium vexans (67.4 to 78.3%) causing respective Fusarium dieback, gray blight, and blister blight diseases in tea crop. Further, these five isolates also possessed significantly greater antifungal (siderophore producer, protease, chitinase, and cellulase activity) and plant growth promotion/promoting (indole-3-acetic acid production, ACC deaminase, ammonia, and phosphate solubilization) traits over other eleven rhizobacterial isolates. Therefore, these five isolates of rhizobacteria were chosen for their plant growth promotion/promoting activity on tea plants in nursery conditions. Results from nursery experiments revealed that these five rhizobacteria significantly improved growth rates of tea plants compared with the control. Therefore, this study suggests that these rhizobacteria could be used to formulate biopesticides and biofertilizers, which could be applied to sustainable tea cultivation to improve crop health and reduce disease attack.

Diversity in rhizospheric microbial communities in tea varieties at different locations and tapping potential beneficial microorganisms.

Soil microenvironments and plant varieties could largely affect rhizosphere microbial community structure and functions. However, their specific effects on the tea rhizosphere microbial community are yet not clear. Beneficial microorganisms are important groups of microbial communities that hold ecological functionalities by playing critical roles in plant disease resistance, and environmental stress tolerance. Longjing43 and Zhongcha108 are two widely planted tea varieties in China. Although Zhongcha108 shows higher disease resistance than Longjing43, the potential role of beneficial tea rhizosphere microbes in disease resistance is largely unknown. In this study, the structure and function of rhizosphere microbial communities of these two tea varieties were compared by using the Illumina MiSeq sequencing (16S rRNA gene and ITS) technologies. Rhizosphere soil was collected from four independent tea gardens distributed at two locations in Hangzhou and Shengzhou cities in eastern China, Longjing43 and Zhongcha108 are planted at both locations in separate gardens. Significant differences in soil physicochemical properties as demonstrated by ANOVA and PCA, and distinct rhizosphere microbial communities by multiple-biotech analyses (PCoA, LEfSe, Co-occurrence network analyses) between both locations and tea varieties (p < 0.01) were found. Functions of bacteria were annotated by the FAPROTAX database, and a higher abundance of Nitrososphaeraceae relating to soil ecological function was found in rhizosphere soil in Hangzhou. LDA effect size showed that the abundance of arbuscular mycorrhizal fungi (AMF) was higher in Zhongcha108 than that in Longjing43. Field experiments further confirmed that the colonization rate of AMF was higher in Zhongcha108. This finding testified that AMF could be the major beneficial tea rhizosphere microbes that potentially function in enhanced disease resistance. Overall, our results confirmed that locations affected the microbial community greater than that of tea varieties, and fungi might be more sensitive to the change in microenvironments. Furthermore, we found several beneficial microorganisms, which are of great significance in improving the ecological environment of tea gardens and the disease resistance of tea plants. These beneficial microbial communities may also help to further reveal the mechanism of disease resistance in tea and potentially be useful for mitigating climate change-associated challenges to tea gardens in the future.

Effect of Short-Term Phosphorus Supply on Rhizosphere Microbial Community of Tea Plants

Microbes play an important role in rhizosphere phosphorus (P) activation and root P absorption in low P-available soils. However, the responses of the rhizosphere microbial community to P input and its effects on P uptake by tea plants have not been widely reported. In this study, the high-throughput sequencing of the 16S rRNA gene and the ITS2 region was employed to examine the responses of tea rhizosphere microbiomes to different P input rates (low-P, P0: 0 mg·kg−1 P; moderate-P, P1: 87.3 mg·kg−1 P; high-P, P2: 436.5 mg·kg−1 P). The results showed that the P input treatments significantly reduced the soil C: N ratio and C: P ratio compared to the P0 treatment (p &lt; 0.05). Moreover, the P2 treatment significantly increased the soil available P, plant biomass and P content of the tea plant compared to the P0 and P1 treatments (p &lt; 0.05). Both bacterial and fungal communities revealed the highest values of alpha diversity indices in the P1 treatment and the lowest in the P2 treatment. The dominant phyla of the bacterial community were Proteobacteria, Actinobacteria and Acidobacteria, while in the fungal community they were Ascomycota and Mortierellomycota. In addition, P input enriched the relative abundance of Actinobacteria and Proteobacteria but decreased the relative abundance of Acidobacteria. The Mantel correlation analysis showed that the fungal community was influenced by P input, whereas bacterial community was affected by the soil TC and C: N ratio. Furthermore, the P input treatments enhanced the TCA cycle, amino and nucleotide glucose metabolism, starch and sucrose metabolism, and phosphotransferase system expression, which could promote C and N cycling. On the contrary, the P input treatments negatively affected the growth of arbuscular mycorrhizal fungi. The PLS-PM model revealed that the rhizosphere bacterial and fungal communities, respectively, negatively and positively affected the P content by affecting the biomass. Meanwhile, rhizosphere microbial function profiles affected the P content of tea plants directly and positively. In summary, moderate P input favors the rhizosphere microbial diversity and functions in the short-term pot experiment. Therefore, we suggest that moderate P input should be recommended in practical tea production, and a further field test is required.

Biofilm producing Bacillus vallismortis TR01K from tea rhizosphere acting as plant growth promoting agent

Microbial biofilms are an aggregation of single or multi-species bacteria that acquires the capacity to adhere to any surface where they can act like a wholesome system chemically “speaking with” each other through quorum sensing. This synergism is very prominently noticed in the rhizospheric regions of plant roots subsequently forming a dome which can protect the root-rhizospheric niche from various biotic and abiotic stress. The bacterial EPS have a number of roles like adhesion, cohesion and aggregation of soil particles, retaining water molecules, acts as a potential barrier on the rhizospheric regions, facilitating ionic and genetic information exchange within the matrix component, enhanced production of plant readily available nutrients etc. Keeping this scenario in mind, this study was formulated on to isolate and explore novel rhizobacteria with colossal biofilm forming ability showing great potential as a source of lignocellulolytic plant growth promoting agent.The crop chosen for this study was tea or Camellia sinensis, a quintessential beverage that is consumed across the globe. The rhizospheric region of a woody plant like tea, acts as a hub for lignocellulosic enzyme producing bacteria. The novel rhizobacteria isolated from cultivated tea soil, Bacillus vallismortis TR01K [NCBI Genbank Accession Number MT672714], was found to have an immense biofilm forming potential that ranged approximately 40x times higher than normal standard bacterial biofilm forming potentials when tested under laboratory conditions. Further in vitro characterizations of the novel strain showed it's immense potential to make plant nutrient available, to produce plant growth hormones (IAA, GA3, Cytokinin) and produce plant stress mitigating hormone (ACC deaminase). Lignocellulolytic enzymes are a vital part of lignocellulosic biomass degradation-a sustainable biotechnological approach for enzymes, organic acids, feed and biofuel production. The selected bacteria was tested elaborately for the family of lignocellulolytic enzymes (cellulase, laccase, lignin peroxidase, pectinase, amylase, chitinase, beta glucanase etc.) which showed promising results. Thus, proving the entire set of experiments in compliance with the aforementioned hypothesis that the novel bacterial isolate from tea rhizosphere has a significant biofilm forming potential with a colossal potency for being lignocellulolytic plant growth promoting agent.

In-silico study of reducing human health risk of POP residues' direct (from tea) or indirect exposure (from tea garden soil): Improved rhizosphere microbial degradation, toxicity control, and mechanism analysis

The accumulation of potentially harmful substances in tea garden soils and tea leaves, especially persistent organic pollutants (POPs), is a special concern for tea consumers worldwide. However, their potential health and ecological risks in tea gardens have rarely been investigated. This study proposed measures to improve the degradation ability of POPs by the tea rhizosphere and to reduce the human health risks caused by POPs after tea consumption. In this study, the binding energy values of six types of POPs and the degraded protein were used to reflect the degradation ability and calculated using molecular dynamic simulations. The main root secretions (i.e., catechin, glucose, arginine, and oxalic acid) were selected and applied with a combination of tea fertilizer and trace element combination (i.e., urea, straw, and copper element), leading to an improved degradation ability (49.59 %) of POPs. To investigate the mechanisms of the factors that affect the degradation ability, molecular docking, tensor singular value decomposition methods, multivariate correlation analysis and 2D-QSAR model were used. The results showed that the solvation energy and solvent accessible surface area are the main forces, and the molecular weight, boiling point, and topological radius of the POPs were the key molecular features affecting their degradation ability. Based on the three key characteristics, a diet avoidance scheme (i.e., avoiding lysine, maslinic acid, ethanol, perfluorocaproic acid, and cholesterol with tea), which can reduce the binding ability of POP residues to aromatic hydrocarbon receptors by 506.13 %. This work will provide theoretical strategies to improve the quality and safety of tea production and reduce the potential risks of harmful substance residues in tea garden soils and tea leaves.

Differential responses of the rhizosphere microbiome structure and soil metabolites in tea (Camellia sinensis) upon application of cow manure

BackgroundThe rhizosphere is the narrow zone of soil immediately surrounding the root, and it is a critical hotspot of microbial activity, strongly influencing the physiology and development of plants. For analyzing the relationship between the microbiome and metabolome in the rhizosphere of tea (Camellia sinensis) plants, the bacterial composition and its correlation to soil metabolites were investigated under three different fertilization treatments (unfertilized, urea, cow manure) in different growing seasons (spring, early and late summer).ResultsThe bacterial phyla Proteobacteria, Bacteroidetes, Acidobacteria and Actinobacteria dominated the rhizosphere of tea plants regardless of the sampling time. These indicated that the compositional shift was associated with different fertilizer/manure treatments as well as the sampling time. However, the relative abundance of these enriched bacteria varied under the three different fertilizer regimes. Most of the enriched metabolic pathways stimulated by different fertilizer application were all related to sugars, amino acids fatty acids and alkaloids metabolism. Organic acids and fatty acids were potential metabolites mediating the plant-bacteria interaction in the rhizosphere. Bacteria in the genera Proteiniphilum, Fermentimonas and Pseudomonas in spring, Saccharimonadales and Gaiellales in early summer, Acidobacteriales and Gaiellales in late summer regulated relative contents of organic and fatty acids.ConclusionThis study documents the profound changes to the rhizosphere microbiome and bacterially derived metabolites under different fertilizer regimes and provides a conceptual framework towards improving the performance of tea plantations.