Taxonomic Approach Research Articles

Intraspecific Morphometric Variation in a New Species of Ceratomyxa Thélohan 1892 (Cnidaria) from the South Atlantic Ocean: An Ecomorphological Study Using Geometric Morphometrics

A new species of Ceratomyxa (Ceratomyxidae, Myxosporea) was found infecting the gall bladder of the Argentine croaker Umbrina canosai Berg 1895 (Sciaenidae, Perciformes) from the Argentine sea. Using an integrative taxonomic approach that combines morphological, bioecological, and molecular analyses, we provide evidence that clearly differentiates this species from known taxa and formally describe Ceratomyxa fialai as a new species. This study is the first to apply landmark-based geometric morphometrics (GM) in myxozoan research, providing a detailed analysis of conspecific morphometric variation of ceratomyxid myxospores, examining their natural variation within and among different ceratomyxids infecting the gall bladder of U. canosai. Using GM analyses, we successfully capture and quantify phenotypic variation at the organismal level. Our results suggest that myxospore shape variation may be driven by both developmental noise and phenotypic plasticity. The work highlights the utility of GM in advancing the understanding of myxozoan morphology and its evolutionary implications and emphasizes the need for further research on myxospore shape evolution and its ecological and adaptive significance in natural populations.

A new species of Namib Day Gecko (Gekkonidae: Rhoptropus Peters, 1869) from the Serra da Neve inselberg, southwestern Angola

The genus Rhoptropus comprises nine recognized species of diurnal geckos endemic to the arid regions of Angola and Namibia. Seven species occur in Angola, including the widespread R. boultoni and the poorly known Angolan endemics R. benguellensis and R. montanus, formerly recognized as subspecies of R. boultoni. While R. benguellensis is relatively widespread in the Angolan Escarpment highlands, R. montanus is geographically restricted to the Huíla Plateau. Recent fieldwork on the Serra da Neve inselberg, a herpetological diversity hotspot in southwestern Angola, revealed the presence of an undescribed species of Rhoptropus at an elevation of approximately 1600 m. An integrative taxonomic approach combining coloration, morphological and molecular data supports the recognition of this population as a distinct taxonomic unit with affinities to R. montanus, which we describe herein as Rhoptropus nivimontanus sp. nov. The discovery of a new species of Rhoptropus endemic to Serra da Neve is discussed in the biogeographic context of the region.

Two new species of ectoparasitic microfungi within the Hesperomyces virescens complex from Algeria, Italy, and Malaysia

Arthropods are hosts to a variety of parasitic fungi, including those within the order of Laboulbeniales (Ascomycota, Laboulbeniomycetes). Species in the genus Hesperomyces are specialized in growing on ladybirds (Coccinellidae). Recent studies have uncovered multiple cryptic species within the Hesperomyces virescens species complex. They found that these species are segregated not only by host, but also by a geographic component. Here, we describe two new species in this species complex, based on morphological, molecular phylogenetic, ecological, and geographical evidence: Hesperomyces chilocori-bipustulati sp. nov. on Chilocorus bipustulatus from the Mediterranean region, and He. coccinellae-transversalis sp. nov. on Coccinella transversalis from Peninsular Malaysia. Hesperomyces chilocori-bipustulati is the second species known to associate with a representative of the genus Chilocorus, after He. virescens sensu stricto which was described from Ch. stigma from the USA. The findings of this paper contribute to our understanding of the diversity, host specificity, and biogeographical distribution within the Hesperomyces virescens species complex and highlight the need for further integrative taxonomy approaches in Laboulbeniales.

A new species of Astragalus (Fabaceae) from the Irano-Turanian biodiversity hotspot: an integrative approach

BackgroundThe genus Astragalus is the largest and one of the most diverse genera of flowering plants, particularly in the Northern Hemisphere, with a significant concentration of species in the Irano-Turanian region. Within this genus, section Hymenostegis is notable for its complexity and high levels of endemism, especially in northwestern Iran. During recent field explorations in West Azarbaijan province, a distinct population of Astragalus was identified, differing from known species within section Hymenostegis. This study aimes to describe and analyze this new species and clarify its relationship with closely related taxa using an integrative approach.ResultsAstragalus kuzehrashensis sp. nov. is described following detailed morphological comparisons with its closest relatives, A. chehreganii and A. hakkianus. The new species is distinguished by unique stipule characteristics, leaflet shape, inflorescence structure, and seed micromorphology. Molecular phylogenetic analysis using ITS and ycf1 sequences reveals that A. kuzehrashensis forms a clade with A. chehreganii and A. hakkianus, although it exhibits genetic differences. Genome size estimation confirms that A. kuzehrashensis is hexaploid (2n = 6x = 48), aligning it more closely with A. hakkianus than with the tetraploid A. chehreganii. The distinct morphological characters and genomic data support recognizing A. kuzehrashensis as a new species within section Hymenostegis.ConclusionsThe identification of A. kuzehrashensis underscores the importance of an integrative taxonomic approach, combining morphological, molecular, and cytogenetic data to resolve species boundaries within complex groups like Astragalus section Hymenostegis. This study highlights the rich biodiversity of the Irano-Turanian floristic region, emphasizing the need for ongoing exploration and conservation efforts, particularly in areas of high endemism. Our findings contribute to a deeper understanding of the taxonomy and evolutionary relationships within the genus Astragalus.

Phenylobacterium ferrooxidans sp. nov., isolated from a sub-surface geothermal aquifer in Iceland.

A novel bacterial strain, HK31-GT, was isolated from a subsurface geothermal aquifer (Hellisheidi, SW-Iceland) and was characterized using a polyphasic taxonomic approach. Phylogenetic analysis of 16S rRNA gene along with phylogenomic position indicated that the novel strain belongs to the genus Phenylobacterium. Cells are motile Gram-negative thin rods. Physiological characterization showed that strain HK31-GT is a mesophilic bacterium able to grow from 10 to 30°C, at pH values between 6 and 8 and at NaCl concentrations between 0 and 0.5%. Optimal growth was observed without sodium chloride at 25°C and pH6. Strain HK31-GT is chemoorganoheterotroph and its major saturated fatty acids are C18:1ω7c, C16:1ω6c and C16:0, the predominant quinone is Q-10 and the major polar lipid is phosphatidylglycerol. The new strain also possesses the capacity to use ferrous iron (Fe(II)) as the sole energy source and can also be considered as a chemolithoautotrophic microorganism. The overall genome of strain HK31-GT was estimated to be 4.46 Mbp in size with a DNA G+C content of 67.95%. Genes involved in iron metabolism were identified, but no genes typically involved in Fe(II)-oxidation were found. According to the overall genome relatedness indices (OGRI) values, six MAGs from groundwater have been assigned to the same species as the new strain HK31-GT. Furthermore, OGRI values between the genome of strain HK31-GT and the genomes of its closest relatives are below the species delineation threshold. Therefore, given the polyphasic approach used, strain HK31-GT represents a novel species of the genus Phenylobacterium, for which the name Phenylobacterium ferrooxidans sp. nov. is proposed. The type strain is HK31-GT (DSM 116432T=UBOCC-M-3429T=LMG 33376T).

Novel contribution to the taxonomy and molecular phylogeny of scuticociliates (Protozoa): Resolving the non-monophyly of the genus Paranophrys Thompson and Berger, 1965 and the establishment of the genus Anteparanophrys n. gen.

During a field survey of parasitic ciliates diversity in South Korea, a scuticociliate was found in a water sample collected during scuba diving. At first glance, the species looks similar to members of the genus Paranophrys especially P. magna but they differ mainly in the body size and the number of somatic kineties. Thus, integrative taxonomic approaches (i.e., silver impregnations, scanning electron microscopy, and molecular phylogeny) were applied and confirmed that the isolate is a new species. Detailed comparison between the new species and the three members of the genus Paranophrys revealed that the new species is similar to P. magna in having membranelle 1 slightly shorter than membranelle 2 and the monokinetids are randomly scattered between dikinetids within each somatic kinety. On the other hand, membranelle 1 in both P. marina (type species) and P. thompsoni is about three times longer than membranelle 2 and their ciliary rows invariably consist of dikinetids anteriorly and monokinetids posteriorly. Observations on the feeding behavior and habitat suggest that the new species is facultative histophagous. Phylogenetic analyses based on 18S rRNA gene indicate that the new species and P. magna belong to the newly established genus Anteparanophrys n. gen. i.e., Anteparanophrys koreana n. sp. and Anteparanophrys magna (Borror, 1972) n. comb.

Pseudomonas retamae sp. nov., a novel endophytic bacterium with plant growth-promoting potential, isolated from root nodules of Retama monosperma in Northwestern Algeria.

A thorough polyphasic taxonomic study, integrating genome-based taxonomic approaches, was carried out to characterize the RB5T strain isolated from root nodules of Retama monosperma growing on the coastal dunes of Bousfer Beach (Oran, Algeria). The 16S rRNA gene sequence analysis revealed that strain RB5T had the highest similarity to Pseudomonas granadensis LMG27940T (98.94%) and Pseudomonas gozinkensis IzPS32dT (98.73%). Phylogenetic studies, including both 16S rRNA gene sequence and multilocus sequence analysis using 16S rRNA, gyrB and rpoD housekeeping genes, positioned RB5T in a distinct branch alongside its closest relative, P. granadensis LMG27940T. Phylogenomic analysis using the Bac120 marker set and Type (Strain) Genome Server confirmed the unique position of RB5T and its close relationship with P. granadensis LMG27940T. Similarly, genomic comparisons using average nucleotide identity based on blast (ANIb) and digital DNA-DNA hybridization (dDDH) revealed values of 92.85 and 59.3%, respectively, when compared with its closest relative, P. granadensis LMG27940T. Both values fall below the established species delimitation thresholds of 95-96% for ANIb and 70% for dDDH, providing strong genomic evidence that strain RB5T represents a novel species. Further average nucleotide identity comparisons with unclassified Pseudomonas spp. (384 genomes) and metagenomic-derived genomes from the Genome Taxonomy Database (GTDB) showed values between 84.27 and 89.2%, indicating that strain RB5T belongs to a unique evolutionary line. The genome of RB5T, with a size of 6 311 310 bp and a G+C content of 60%, harbours several key genes associated with plant growth-promoting traits, making it a promising candidate for sustainable agriculture. Phenotypically, RB5T strain is an aerobic, rod-shaped, Gram-negative, non-spore-forming bacterium that is motile with a single polar flagellum. It grows under a wide range of temperature (4-42 °C) and pH (5-10) conditions and tolerates up to 6% (w/v) NaCl. The main cellular fatty acid composition of RB5T includes C16:0, C17:0 cyclo and the summed features 3 consisting of C16:1 ω7c/C16:1 ω6c. Based on the phylogenetic, phenotypic, chemotaxonomic and genome comparison analyses, strain RB5T was identified as a novel species of the genus Pseudomonas, for which the name Pseudomonas retamae sp. nov. is proposed. The type strain is RB5T (=DSM 117471T=LMG 33633T=CIP 112482T).

Cuticular composition: An alternative taxonomic approach to differentiate between Argas arboreus and Argas persicus ticks (Acari: Argasidae)

Argas arboreus and A. persicus are blood sucking ectoparasites on domestic birds in Egypt. They cause anemia in birds, in addition to transmitting a variety of pathogens that leads to economical loss in the poultry industry. It is difficult for non-taxonomists to differentiate between these species because of minor morphological characters. Therefore, it is very important to identify tick species for developing a suitable strategy to reduce risks to poultry wealth. This study characterized the female cuticular hydrocarbons of two Argas species using gas chromatography-mass spectrometry. Sixty different hydrocarbons were exclusively identified in A. arboureus, whereas only 51 in A. persicus. Some of the hydrocarbon compounds were stage-specific ones that differentiate between two species. Others shared between all feeding stages of both species that improved they are closely related ones. Genetic variability recorded its maximum value between unfed stages of the two species, and similarity reached only 25%. The present study provides the first chemotaxonomic data to differentiate between two closely related Argas species according to their cuticular hydrocarbons. Therefore, hydrocarbon composition seems to be a promising tool available as a taxonomic character, in addition improved that feeding stage was the susceptible one to be controlled.

Autonomous Reef Monitoring Structures (ARMS) as a tool to uncover neglected marine biodiversity: two new Solenogastres (Mollusca, Aplacophora) from the Gulf of Mexico.

Solenogastres is a group of mollusks with evolutionary and ecological importance. Nevertheless, their diversity is underestimated and knowledge about the distribution of the approximately 300 formally described species is limited. Factors that contribute to this include their small size and frequent misidentification by non-specialists. Recent deep-sea explorations have resulted in the collection of numerous specimens through effective methods such as epibenthic sledges. However, this is a costly, labor-intensive, and destructive methodology. In contrast, Autonomous Reef Monitoring Structures (ARMS) offer a novel, non-destructive approach, by providing a substrate for benthic organism colonization. This study is the first to describe Solenogastres collected using ARMS, demonstrating that they are an effective tool for biodiversity assessment and characterizing rare marine invertebrates. Following an integrative taxonomic approach, two new solenogaster species are described: Dondersiatweedtae Farris, Olson & Kocot, sp. nov. (Dondersiidae) and Eleutheromeniabullescens Cobo, sp. nov. (Pruvotinidae). The diagnosis of the family Dondersiidae is amended and the necessity of reassessing the validity of the current diagnostic characters for Pruvotinidae, and its classification is emphasized. The two newly described species exhibit distinct external characteristics; D.tweedtae sp. nov. has a striking pink color with a bright yellow dorsal keel and E.bullescens sp. nov. has a unique, discontinuous dorsal keel with nearly spherical protrusions. The presence of cnidocytes in the digestive systems of both species indicate that they feed on cnidarians. It is hypothesized that, like in some nudibranchs, their coloration and body features reflect defensive adaptations related to their diet. This study shows that while habitus alone is typically insufficient for accurate identification in solenogasters, it can sometimes simplify the process. For this, live observations and photographs are essential.

Analysis of Türkiye Century Maarif Model Secondary School Mathematics Curriculum According to SOLO Taxonomy

Educational programs are regularly updated to keep pace with social developments and scientific advancements. In this context, a new educational program called the Türkiye Century Maarif Model was introduced into the Turkish Education System in 2024. Taxonomic approaches are often employed in the development of educational programs; however, the specific taxonomic approach used in this program has not been disclosed. The aim of this study is to analyze the secondary school Mathematics Course outcomes of the Türkiye Century Maarif Model Educational Program using the SOLO taxonomy. The study utilized document analysis, a qualitative research method. The outcomes were analyzed according to the SOLO taxonomy using software developed by the researchers. The results of the analysis were then reported and discussed.

Diversity and future perspectives of Mediterranean deep-water oyster reefs

Anthropogenic and climate factors are increasingly affecting the composition and functions of many marine biogenic reefs globally, leading to a decline in associated biodiversity and ecosystem services. Once dominant ecological component, modern oyster reefs in the Mediterranean and Black Sea and the Atlantic Ocean have already been profoundly altered by overharvesting, habitat loss and the introduction of alien species. Far less known are deep-water oyster reefs, which can however form substantial biogenic structures below 30 m depth. Here we analyze the diversity of benthic assemblages associated with deep-water oyster reefs formed by the gryphaeid Neopycnodonte cochlear, and other mesophotic habitats in the central Mediterranean Sea using a taxonomic and functional approach. Our findings suggest that deep-water oyster reefs may act as hotspots of biodiversity and ecological functions in the Mediterranean Sea under current conditions, having also an edge in survival in a changing ocean.

Extended phylogenetic analysis and morphology of the Iresine cassiniiformis – I. hartmanii alliance (Amaranthaceae) reveals two further geographically distinct species

Background: Shrubs recognized as I. hartmanii were known from the northern Mexican deserts, whereas I. cassiniiformis is considered to occur throughout the Mexican highlands. Morphologically similar individuals were reported under both names also south beyond the Isthmus of Tehuantepec to Guatemala. Question: Are I. hartmanii and I. cassiniiformis distinct species, or do they represent widespread taxa exhibiting clinal variation due to adaptation along a gradient spanning desert to evergreen tropical forest? Taxon: Amaranthaceae, Iresine. Study site: Mexico and Central America. Method: Field and herbarium work, molecular phylogenetics, morphology, palynology, distribution mapping. Results: Plastid and nuclear phylogenetic trees suggest a complex speciation scenario in Iresine, revealing new lineages in the mountains of Chiapas, Oaxaca and Guatemala that also differ by morphological characters. Iresine cassiniiformis appears monophyletic and occurs in the Trans-Mexican Volcanic Belt whereas I. hartmanii comprises a core clade of individuals confined to the northern deserts. Specimens morphologically intermediate to I. cassiniiformis, and part of the I. hartmanii species clade in nrITS, occur directly south of the desert zone, either representing ancestral types in the speciation of I. hartmanii or introgression from I. cassiniiformis. Conclusion: Our results underscore the importance of an integrative taxonomy approach including molecular phylogenetics and morphology with a dense sampling of putative species from throughout the geographical range in order to arrive at explicit hypotheses on species limits. Here this supports the description and naming of two new species.

Systematisation of criminal law measures in the Draft Criminal Code of Ukraine

The article analyses the criminal legal measures reflected in the Draft Criminal Code of Ukraine through the prism of a taxonomic approach. The author concludes that the criminal legal measures provided in the draft are coherent and clear, achieved by a peculiar legal technique. The authors of the draft took into account the proposals of scholars and practitioners to expand the areas of criminal law influence, which made it possible to build a logical and well-thought-out system of criminal law measures. The author of this paper considers the understanding of criminal liability in the draft as a supra-specific category that covers certain types of criminal law measures to be successful and also considers it an appropriate and necessary step to define such types of criminal law measures as restitution and Compensation in the draft. At the same time, the author points out certain shortcomings, in particular, the term used to refer to the central element of the system - remedy; the absence in the draft CC of Ukraine of the essential features of certain types of criminal legal measures and the purposes of the types of criminal legal measures identified by the members of the Working Group. The article concludes that, along with the predicate approach, consideration of the relational dimension, which requires the identification of taxonomic attributes which recognise the essential features of a particular type of legal measure, is a necessary step in further improving the systematisation of criminal legal measures in the draft CC of Ukraine. Therefore, eliminating the relevant shortcomings could become the basis for improving the systematisation of criminal legal measures.

Genomic and Phenotypic Characterization of Streptomyces sirii sp. nov., Amicetin-Producing Actinobacteria Isolated from Bamboo Rhizospheric Soil.

In our large-scale search for antimicrobial-producing bacteria, we isolated an actinomycete strain from rhizospheric soil of Bambusa vulgaris. The strain designated BP-8 showed noticeable antibacterial activity. BP-8 was subjected to a whole-genome analysis via a polyphasic taxonomy approach, and its antibacterial metabolite was identified by HRLS-MS. The results of the physiological and morphological analyses indicated that BP-8 is an aerobic, neutrophilic, mesophilic organism that is tolerant to 8% NaCl and can use a wide range of carbohydrates. It forms curly sporophores with a warty surface. The results of the phylogenetic and average nucleotide identity analyses and in silico DNA-DNA hybridization calculation indicated that BP-8 represents the type strain of a novel Streptomyces species. A comparative in silico analysis of the genome sequences of BP-8 and its closest related strains revealed the presence of genes encoding chemotaxonomic markers characteristic of Streptomyces. The antibacterial compound was identified as amicetin. Genomic mining also revealed more than 10 biosynthetic gene clusters that have not been described previously and may lead to the discovery of new valuable compounds. On the basis of these results, strain BP-8T (=VKM Ac-3066T = CCTCC AA 2024094T) is proposed as the type strain of the novel species Streptomyces sirii sp. nov.

Studies on western Pacific gorgonians (Anthozoa: Octocorallia). Part 3: towards a revision of the bamboo corals (Keratoisididae) with descriptions of three new genera and four new species

Members of clade J3 in Keratoisididae form a large monophyletic branch but show a diversity of morphological features. Based on an integrated taxonomy approach, six specimens of deep-sea bamboo corals (Octocorallia: Keratoisididae) collected from the seamounts in the Western Pacific Ocean are described as three new genera and four new species of clade J3. Aethisis turriformis gen. et sp. nov. is characterized by branches originating in different planes forming a tree-shaped colony, a bare sclerite-free area present at the base of each tentacle, and in polyps and coenenchyme flat rods and thick scales often with toothed lateral edges and two rounded ends. Parajasonisis flabellata gen. et sp. nov. is characterized by alternately and biserially arranged polyps, flat rods/needles in the upper polyp body wall, and flat rods and elongate and thick scales in the basal polyp body wall and coenenchyme. Dentatisis gen. nov. is characterized by flat rods in tentacles with dentate lateral edges and two rounded and slightly expanded ends, irregular rods with conical projections in the pharynx, granulated needles and flat rods both present in polyp body wall. Dentatisis bathyalis sp. nov. has dense scales with a medial constriction in basal polyp body wall and coenenchyme, and needles forming longitudinal bands at the mesenterial insertions, extending to the upper polyp body wall. Dentatisis projecta sp. nov. is characterized by trumpet-shaped polyps with large needles projecting beyond the tentacles bases, abundant granulated rods/needles, and scales absent in polyp body wall and coenenchyme. The species in clade J3, especially the genus Dentatisis gen. nov., show high morphological differentiation. Phylogenetic analyses of mtMutS and 28S rDNA both supported the assignment of the new genera and species. Compared with mtMutS, 28S rDNA showed high genetic variation with the three new genera each forming single clades respectively with moderate to high support in 28S rDNA trees. The nuclear marker 28S rDNA may be more effective than the mitochondrial marker mtMutS, and could be a promising marker to distinguishing keratoisidid congeners.

Cultivated genome references for protein database construction and high-resolution taxonomic annotation in metaproteomics.

Metaproteomics offers a profound understanding of the functional dynamics of the gut microbiome, which is crucial for personalized healthcare strategies. The selection of an appropriate database is a critical step for the identification of peptides and proteins, as well as for the provision of accurate taxonomic and functional annotations. The matched metagenomic-derived database is considered to be the best, but its limitations include the identification of low-abundance organisms and taxonomic resolution. Herein, we constructed a protein database (DBCGR2) based on Cultivated Genome Reference 2 (CGR2) and developed a complete peptide-centric analysis workflow for database searching and for the annotation of taxonomy and function. This workflow was subsequently appraised in comparison with metagenomics-derived databases for the analysis of metaproteomic data. Our findings suggested that the performance of DBCGR2 in identification was comparable with metagenomics-derived databases with improvement in identification rates of peptides from low-abundance species. The database searching results could be fully annotated using the pepTaxa taxonomic annotation approach developed in this study, and the taxonomic resolution was enhanced to strain level. Additionally, the results demonstrated that the sensitivity of functional annotation could be enhanced by employing DBCGR2. Overall, the DBCGR2 combined with pepTaxa can be considered an alternative for metaproteomic data analysis with superior analysis performances.IMPORTANCEMass spectrometry-based metaproteomics offers a profound understanding of the gut microbial taxonomy and functionality. The databases utilized in the analysis of metaproteomic data are crucial, as they determine the identification of proteins that can be recognized and linked to overall human health, in addition to the quality of taxonomic and functional annotation. Among the most effective approaches for constructing protein databases is the utilization of metagenomic sequencing to create matched databases. However, the database, derived from isolated genomes, has yet to undergo rigorous testing for their efficacy and accuracy in protein identification and taxonomic and functional annotation. Here, we constructed a protein database DBCGR2 derived from Cultivated Genome Reference 2 (CGR2) and a complete workflow for data analysis. We compared the performances of DBCGR2 and metagenomics-derived databases. Our results indicated that DBCGR2 can be regarded as an alternative to metagenomics-derived databases, which contribute to metaproteomic data analysis.

Solving of the long-term question: resurrection of Dinodon yunnanensis Werner, 1922 (Squamata: Colubridae: Lycodon)

We apply an integrative taxonomic approach, including analyses of molecular and morphological data, along with examination of available type materials, to address the longstanding questioned taxonomic status of Dinodon yunnanensis Werner, 1922, currently considered a junior synonym of Lycodon fasciatus (Anderson, 1879). Based on our data, we revalidate Dinodon yunnanensis, under the combination Lycodon yunnanensis (Werner, 1922) comb. nov. According to the new taxonomic status of Lycodon yunnanensis comb. nov, we restrict the distribution of Lycodon fasciatus to Northeastern India, Central Bhutan, Northern and Central Myanmar, Western and Southwestern Yunnan of China, Northwestern Thailand, Northern Laos, and Northwestern Vietnam. We suggest that Lycodon yunnanensis comb. nov should be considered Least Concern (LC) following the IUCN’s Red List categories. Further studies reassessing the populations of the Lycodon fasciatus complex in Xizang of China is required.

The Multifunctional Catalytic Hemoglobin from Amphitrite ornata: Protocols on Isolation, Taxonomic Identification, Protein Extraction, Purification, and Characterization.

The multifunctional catalytic hemoglobin from the terebellid polychaete Amphitrite ornata, also named dehaloperoxidase (AoDHP), utilizes the typical oxygen transport function in addition to four observed activities involved in substrate oxidation. The multifunctional ability of AoDHP is presently a rare observation, and there exists a limitation for how novel dehaloperoxidases can be identified from macrobenthic infauna. In order to discover more infaunal DHP-bearing candidates, we have devised a facilitated method for an accurate taxonomic identification that places visual and molecular taxonomic approaches in parallel. Traditional visual taxonomic species identification by the non-specialist, at least for A. ornata or even for other marine worms, is a very difficult and time-consuming task since a large diversity is present and the method is restricted to adult worm specimens. The work herein aimed to describe a method that simplifies the taxonomic identification of A. ornata in particular through the assessment of its mitochondrial cytochrome c oxidase subunit I gene by employing the DNA barcoding technique. Furthermore, whole-worm specimens of A. ornata were used to extract and purify AoDHP followed by an H2O2-dependent peroxidase activity assay evaluation against substrate 2,4,6-trichlorophenol. AoDHP isoenzyme A was also overexpressed as the recombinant protein in Escherichia coli, and its peroxidase activity parameters were compared to AoDHP from the natural source. The activity assay assessment indicated a tight correlation for all Michaelis-Menten parameters evaluated. We conclude that the method described herein exhibits a streamlined approach to identify the polychaete A. ornata, which can be adopted by the non-specialist, and the full procedure is predicted to facilitate the discovery of novel dehaloperoxidases from other marine invertebrates.

Geodermatophilus maliterrae sp. nov., a member of the Geodermatophilaceae isolated from badland surfaces in the Red Desert, Wyoming, USA.

A novel Gram-stain-positive, black-pigmented bacterium, designated as WL48A T, was isolated from the surface of badland sedimentary rock in the Red Desert of Wyoming and characterized using a polyphasic taxonomic approach. Good growth occurred at 28-32 °C, pH 7-9, and NaCl less than 1% (w/v). Colonies, growing well on International Streptomyces Project media (ISP) 3 and ISP 7, were black and adhering to the agar. Phylogenetic analyses based on 16S rRNA gene and draft genome sequences showed that strain WL48AT belongs to the family Geodermatophilaceae, forming a distinct sub-branch with Geodermatophilus bullaregiensis DSM 46841T. The organism showed 16S rRNA gene sequence similarity of 98.8% with G. bullaregiensis DSM 46841T. Digital DNA-DNA hybridization value between the genome sequences of strain WL48A T and G. bullaregiensis DSM 46841T was 51.8%, below the threshold of 70% for prokaryotic species delineation. The chemotaxonomic investigation revealed the presence of galactose, glucose, mannose, xylose and ribose as well as meso-DAP in the peptidoglycan layer. The polar lipid profiles contained phosphatidylcholine (PC), phosphatidylinositol (PI), diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE) phosphoglycolipid, phospholipids and an unidentified lipid. The menaquinone profile consisted of MK-9(H4) (98.2%) and MK-9(H2) (10.8%). The major fatty acid profile (>15%) comprised iso-C15 : 0 and iso-C16 : 0. Based on phenotypic, genetic and genomic data, strain WL48AT (=DSM 116197T = NCIMB 15483T=NCCB 100957T =ATCC TSD-376T) merits to be considered as a novel species for which the name Geodermatophilus maliterrae sp. nov. is proposed.

A new large predator (Amphipoda, Eusiridae) hidden at hadal depths of the Atacama Trench

The deep ocean is a vast reservoir of new species to science, and each discovery improves our ecological understanding of these remote ecosystems. One island-like ecosystem is the Atacama Trench (Southeast Pacific Ocean), where the hadal depths (>6000 m) host a distinctive endemic community. Unlike the communities of other hadal subduction trenches, predatory (non-scavenging) amphipods have not been documented or collected from the Atacama Trench. In this study, we applied an integrative taxonomic approach to describe a new predatory amphipod in the Eusiridae Stebbing, 1888 family collected from 7902 m during the 2023 IDOOS Expedition and provide an updated global Eusiridae key with the 14th genus. Morphology and DNA barcoding robustly supported raising a new genus separate from the systematically similar genera Dorotea. Dulcibella camanchaca gen. nov. sp. nov. is a large amphipod (holotype: 38.9 mm length) with diagnostic features that include: a smooth dorsal body, 12 spines on the outer maxilla 1 plate, subsimilar and strongly subchelate gnathopods with broad carpus lobes, the pereopods 3 and 4 dactyli are 0.45× of the respective propodus and pereopods 5 to 7 dactyli are 0.6×, a distal spiniform process on the peduncle of uropod 1, and an elongated but weakly cleft telson. Together, Dulcibella camanchaca gen. nov. sp. nov. is a novel predator and reinforces the eco-evolutionary distinctiveness of the Atacama Trench. http://zoobank.org/urn:lsid:zoobank.org:pub:95A6C497-AC8E-4C24-B451-C4B7F76CE687