Abundance Of Synechococcus Research Articles

Chromatic Acclimating Synechococcus Dominate in Mesoscale Eddies

AbstractMesoscale eddies are found almost everywhere in global ocean. They can last for weeks to months with scales up to over 100 km and play important roles in global biogeochemical cycles. In this study, we analyzed the phylogenetic and pigment type composition of Synechococcus in a cyclonic eddy (CE, cold eddy) and an anticyclonic eddy (ACE, warm eddy) located in western South China Sea in summer, 2018. Nutrients pumping enhanced Synechococcus abundance markedly in the upper euphotic layers of CE. High diversity of both phylogenetic clades and pigment types of Synechococcus were discovered in the sampling area, with clear composition difference between CE and ACE. The chromatic acclimating pigment type (PT) 3dA dominated in CE while PT 3dB dominated in ACE. The potential weak chromatic acclimator PT 3eA contributed a significant proportion in both CE and ACE. To better understand the difference of PT composition in CE and ACE, we further investigated the phylogenetic composition of Synechococcus in CE and ACE. Clade CRD 1, which were the main strains in upwelling regions, were dominant in CE, where cooler and nutrient rich subsurface water was pumped to the upper layers. Warm water adapted clade II and clade III dominated in ACE. Our study, for the first time, indicated that chromatic acclimation was important in shaping the vertical profile of Synechococcus community in mesoscale eddies of the subtropical oceans.

Temporal and spatial diversity and abundance of cryptophytes in San Diego coastal waters.

Cryptophytes (class Cryptophyceae) are bi-flagellated eukaryotic protists with mixed nutritional modes and cosmopolitan distribution in aquatic environments. Despite their ubiquitous presence, their molecular diversity is understudied in coastal waters. Weekly 18S rRNA gene amplicon sequencing at the Scripps Institution of Oceanography pier (La Jolla, California) in 2016 revealed 16 unique cryptophyte amplicon sequence variants (ASVs), with two dominant "clade 4" ASVs. The diversity of cryptophytes was lower than what is often seen in other phytoplankton taxa. One ASV represented a known Synechococcus grazer, while the other one appeared not to have cultured representatives and an unknown potential for mixotrophy. These two dominant ASVs were negatively correlated, suggesting possible niche differentiation. The cryptophyte population in nearby San Diego Bay was surveyed in 2019 and showed the increasing dominance of a different clade 4 ASV toward the back of the bay where conditions are warmer, saltier, and shallower relative to other areas in the bay. An ASV representing a potentially chromatically acclimating cryptophyte species also suggested that San Diego Bay exerts differing ecological selection pressures than nearby coastal waters. Cryptophyte and Synechococcus cell abundance at the SIO Pier from 2011 to 2017 showed that cryptophytes were consistently present and had a significant correlation with Synechococcus abundance, but no detectable seasonality. The demonstrated mixotrophy of some cryptophytes suggests that grazing on these and perhaps other bacteria is important for their ecological success. Using several assumptions, we calculated that cryptophytes could consume up to 44% (average 6%) of the Synechococcus population per day. This implies that cryptophytes could significantly influence Synechococcus abundance.

Structure and composition of microbial communities in the water column from Southern Gulf of Mexico and detection of putative hydrocarbon-degrading microorganisms.

This study assessed the bacterioplankton community and its relationship with environmental variables, including total petroleum hydrocarbon (TPH) concentration, in the Yucatan shelf area of the Southern Gulf of Mexico. Beta diversity analyses based on 16S rRNA sequences indicated variations in the bacterioplankton community structure among sampling sites. PERMANOVA indicated that these variations could be mainly related to changes in depth (5 to 180 m), dissolved oxygen concentration (2.06 to 5.93 mg L-1), and chlorophyll-a concentration (0.184 to 7.65 mg m3). Moreover, SIMPER and one-way ANOVA analyses showed that the shifts in the relative abundances of Synechococcus and Prochlorococcus were related to changes in microbial community composition and chlorophyll-a values. Despite the low TPH content measured in the studied sites (0.01 to 0.86 μL L-1), putative hydrocarbon-degrading bacteria such as Alteromonas, Acinetobacter, Balneola, Erythrobacter, Oleibacter, Roseibacillus, and the MWH-UniP1 aquatic group were detected. The relatively high copy number of the alkB gene detected in the water column by qPCR and the enrichment of hydrocarbon-degrading bacteria obtained during lab crude oil tests exhibited the potential of bacterioplankton communities from the Yucatan shelf to respond to potential hydrocarbon impacts in this important area of the Gulf Mexico.

Changes in size-dependent Chlorophyll a concentration and group-specific picophytoplankton abundance in short-term nutrient-addition experiments in the Equatorial Eastern Indian Ocean

To clarify the changes in phytoplankton community and influencing factors in short-term nutrient-addition experiments in the Equatorial Eastern Indian Ocean, we conducted three experiments (one in situ-like experiment, one on-deck experiment with deep seawater, and one on-deck experiment with surface seawater). Our findings indicate that when nutrients were added, there was a more significant increase in the chlorophyll a (chl a) concentrations of microphytoplankton (>20 μm) compared to those of nanophytoplankton (2-20 μm) and picophytoplankton (<2 μm). The chl a concentrations for phytoplankton <20 μm only exhibited significant increases in the on-board incubation of surface seawater collected at 1300 hr when grazing stress have likely been weak. In picophytoplankton, occasional increases in the abundances of Synechococcus were found, while the abundances of Prochlorococcus and eukaryotic picophytoplankton (Peuk) did not increase significantly. It results likely from the preference of grazing effect by herbivores and bottle effects. Additionally, the Prochlorococcus from 75 m was more adapted to weak light, thus its abundance sharply decreased when incubated under high light. We suggest that the nutrient effects have greater influence on microphytoplankton, but other factors, such as grazing and light, might contribute more to <20 μm phytoplankton. Furthermore, bottle effects should be considered when conducting incubation experiments.

Seasonal and spatial variations of Synechococcus in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay.

Synechococcus is abundant and globally widespread in various marine environments. Seasonal and spatial variations in Synechococcus abundance, pigment types, and genetic diversity were investigated based on flow cytometric analysis and high-throughput sequencing of cpcBA operon (encoding phycocyanin) and rpoC1 gene (encoding RNA polymerase) in a temperate semi-enclosed bay. Synechococcus abundance exhibited seasonal variations with the highest value in summer and the lowest value in winter, which was consistent with temperature variation. Three pigment types of Synechococcus type 1, type 2, and type 3 were distinguished based on cpcBA operon, which displayed obvious variations spatially between the inner and the outer bay. Freshwater discharge and water turbidity played important roles in regulating Synechococcus pigment types. Synechococcus assemblages were phylogenetically diverse (12 different lineages) based on rpoC1 gene and dominated by three core lineages S5.1-I, S5.1-IX, and S5.2-CB5 in different seasons. Our study demonstrated that Synechococcus abundance, pigment types, and genetic diversity displayed variations seasonally and spatially by different techniques, which were mainly driven by temperature, salinity, nutrients, and turbidity. The combination of more technical means provides more information for studying Synechococcus distribution. In this study, three pigment types of Synechococcus were discriminated simultaneously by dual lasers flow cytometer for the first time.

Amplicon sequencing with internal standards yields accurate picocyanobacteria cell abundances as validated with flow cytometry.

To understand ecosystem state and function, marine microbial ecologists seek measurements of organismal abundance and diversity at high taxonomic resolution. Conventional flow cytometry accurately estimates microbial cell abundance but only discerns broad groups with distinct optical properties. While amplicon sequencing resolves more comprehensive diversity within microbiomes, it typically only provides relative organismal abundances within samples, not absolute abundance changes. Internal genomic standards offer a solution for absolute amplicon-based measures. Here, we spiked genomic standards into plankton samples from surface seawater, gathered at 46-km intervals along a cruise transect spanning the southern California Current System and the oligotrophic North Pacific Subtropical Gyre. This enabled evaluation of the absolute volumetric gene copy abundances of 16S rRNA amplicon sequence variants (amplified with 515Y-926R universal primers, quantitatively validated with mock communities) and cell abundances of picocyanobacteria with known genomic 16S copy numbers. Comparison of amplicon-derived cell abundances of Prochlorococcus and Synechococcus with flow cytometry data from nearby locations yielded nearly identical results (slope = 1.01; Pearson's r = 0.9942). Our findings show that this amplicon sequencing protocol combined with genomic internal standards accurately measures absolute cell counts of marine picocyanobacteria in complex field samples. By extension, we expect this approach to reasonably estimate volumetric gene copies for other amplified taxa in these samples.

Hydrodynamics drives shifts in phytoplankton community composition and carbon-to-chlorophyll a ratio in the northern South China Sea

Phytoplankton play significant roles in the carbon cycle in oceans. Phytoplankton biomass and community composition are often mediated by ocean hydrodynamics. It is vital to quantify the phytoplankton carbon content and carbon:Chlorophyll a (C:Chl a) ratio and to better understand the link between hydrodynamics and phytoplankton communities in marine environments, which are important parameters in marine biogeochemical models. Environmental variables, phytoplankton community composition, abundance, particulate organic carbon, and Chl a were determined in summer in the northern South China Sea (SCS), which was influenced by the Pearl River discharge, upwelling, and anticyclonic eddy, to examine the links between hydrodynamics, phytoplankton community, and C:Chl a ratio. Our results showed that the spatial variabilities in phytoplankton community composition, and carbon content, and C:Chl a ratio were driven by hydrodynamics. Nutrient enrichment favored the growth of diatoms, especially small chain-forming diatoms at the Pearl River Estuary stations. From inshore to offshore, the dominant phytoplankton shifted from small-chain diatoms to large diatoms and dinoflagellates, increasing phytoplankton biodiversity from inshore to offshore. Weak upwelling caused an increase in Synechococcus abundance, while an anticyclonic eddy resulted in a high abundance of Prochlorococcus and Trichodesmium spp. in the present study. We found that the relationship between phytoplankton carbon content and the logarithm of Chl a concentration fit an exponential curve. The C:Chl a ratio increased from 72.7 g g−1 at Pearl River Estuary stations, to 101 g g−1 at Pearl River discharge dilution stations and to 131 g g−1 at SCS surface stations due to shifts in phytoplankton community composition. The low C:Chl a ratio was attributed to the high abundance of diatoms in the Pearl River plume-impacted area, whereas a high C:Chl a ratio was related to the dominance of cyanobacteria at SCS surface stations. Our findings provide insights into quantifying phytoplankton carbon content and understanding the links between hydrodynamics, phytoplankton community composition, carbon content, and C:Chl a ratio in oceans.

Flow cytometric investigation and comparison of Synechococcus spp. pico-, nano- and microplankton in the Arctic and Antarctic polar regions during the summer period of 2019

ABSTRACT In the present study, Synechococcus spp. pico-, nano- and microplankton community compositions in the Arctic and Antarctic surface coastal waters were compared during the summer of 2019 using flow cytometry. The average surface water temperatures in Antarctica and the Arctic were −0.29 ± 0.28°C and 3.71 ± 0.71°C, respectively. While plankton abundance in Antarctica exhibited a relative increase with temperature, plankton abundance in the Arctic exhibited a relative decrease with temperature. However, no significant correlation was found between plankton abundance and temperature. Synechococcus spp. cell abundance dominated in both polar regions, followed by picoeukaryotes, microautotrophs and nanoeukaryotes. Overall, plankton abundance across sampling sites was highly variable. In Antarctica, the abundance of Synechococcus spp., picoeukaryotes, nanoeukaryotes and microautotrophs were the highest in S4 (151,400 cells/ml), S1 (2180 cells/ml), S2 (1080 cells/ml) and S4 (6100 cells/ml), respectively. On the other hand, the most abundant stations in the Arctic in terms of Synechococcus spp., picoeukaryotes, nanoeukaryotes and microautotrophs were N2 (19600 cells/ml), N3 (6400 cells/ml), N3 (500 cells/ml) and N4 (6100 cells/ml), respectively. While Synechococcus spp. and nanoeukaryote abundance were higher in Antarctica, only Synechococcus spp. abundance was significantly higher in Antarctica.

Seasonal Patterns of Picocyanobacterial Community Structure in the Kuroshio Current.

The nutrient-scarce, warm, and high-salinity Kuroshio current has a profound impact on both the marine ecology of the northwestern Pacific Ocean and the global climate. This study aims to reveal the seasonal dynamics of picoplankton in the subtropical Kuroshio current. Our results showed that one of the picocyanobacteria, Synechococcus, mainly distributed in the surface water layer regardless of seasonal changes, and the cell abundance ranged from 104 to 105 cells mL-1. In contrast, the maximum concentration of the other picocyanobacteria, Prochlorococcus, was maintained at more than 105 cells mL-1 throughout the year. In the summer and the autumn, Prochlorococcus were mainly concentrated at the water layer near the bottom of the euphotic zone. They were evenly distributed in the euphotic zone in the spring and winter. The stirring effect caused by the monsoon determined their distribution in the water column. In addition, the results of 16S rRNA gene diversity analysis showed that the seasonal changes in the relative abundance of Synechococcus and Prochlorococcus in the surface water of each station accounted for 20 to 40% of the total reads. The clade II of Synechococcus and the High-light II of Prochlorococcus were the dominant strains in the waters all year round. Regarding other picoplankton, Proteobacteria and Actinobacteria occupied 45% and 10% of the total picoplankton in the four seasons. These data should be helpful for elucidating the impacts of global climate changes on marine ecology and biogeochemical cycles in the Western Boundary Currents in the future.

Quantified effect of seawater biogeochemistry on the temperature dependence of sea spray aerosol fluxes

Abstract. Future change in sea surface temperature may influence climate via various air–sea feedbacks and pathways. In this study, we investigate the influence of surface seawater biogeochemical composition on the temperature dependence of number-based sea spray emission fluxes. The dependence of sea spray fluxes was investigated in different water masses (i.e., subantarctic, subtropical and frontal bloom) with contrasting biogeochemical properties across a temperature range from ambient (13–18 ∘C) to 2 ∘C using seawater circulating in a plunging jet sea spray generator. We observed a significant increase in the sea spray total concentration at temperatures below 8 ∘C. Specifically, at 2 ∘C, there was an average 4-fold increase compared to the initial concentration at ambient temperatures. This temperature dependence was more pronounced for smaller-sized sea spray particles (i.e., nucleation and Aitken modes). Moreover, the temperature dependence varied based on the seawater type and its biogeochemical properties. While the sea spray flux at moderate temperatures (8–11 ∘C) was highest in frontal-bloom waters, the effect of low temperature on the sea spray flux was highest in subtropical seawaters. The temperature dependence of the sea spray flux was found to be inversely proportional to the abundance of the cyanobacterium Synechococcus in seawater. This relationship allows for parameterizing the temperature dependence of sea spray emission fluxes based on Synechococcus, which may be utilized in future modeling exercises.

Latitudinal and meridional patterns of picophytoplankton variability are contrastingly associated with Ekman pumping and the warm pool in the tropical western Pacific.

Marine picophytoplankton plays a major role in marine cycling and energy conversion, and its effects on the carbon cycle and global climate change have been well documented. In this study, we investigated the response of picophytoplankton across a broad range of physicochemical conditions in two distinct regions of the tropical western Pacific. Our analysis considered the abundance, carbon biomass, size fraction, distribution, and regulatory factors of the picophytoplankton community, which included the cyanobacteria Prochlorococcus and Synechococcus, and small eukaryotic phytoplankton (picoeukaryotes). The first region was a latitudinal transect along the equator (142-163° E, 0° N), characterized by stratified oligotrophic conditions. The second region was a meridional transect (143° E, 0-22° N) known for its high-nutrient and low-chlorophyll (HNLC) conditions. Results showed that picophytoplankton contributed >80% of the chlorophyll a (Chl a), and was mainly distributed above 100 m. Prochlorococcus was the dominant organism in terms of cell abundance and estimated carbon biomass in both latitudinal and meridional transects, followed by Synechococcus and picoeukaryotes. In the warm pool, Prochlorococcus was primarily distributed below the isothermal layer, with the maximum subsurface abundance forming below it. The maximum Synechococcus abundance was restricted to the west-warm pool, due to the high temperature, and the second-highest Synechococcus abundance was associated with frontal interaction between the east-warm pool and the westward advance of Middle East Pacific water. In contrast, picoeukaryotes formed a maximum subsurface abundance corresponding to the subsurface Chl a maximum. In the mixed HNLC waters, the cell abundance and biomass of the three picophytoplankton groups were slightly lower than those in the warm pool. Due to a cyclonic eddy, the contours of the maximum subsurface Prochlorococcus abundance were uplifted, evidently with a lower value than the surrounding water. Synechococcus abundance varied greatly in patches, forming a weakly high subsurface peak when the isothermal layer rose to the near-surface (<50 m). The subsurface maximum picoeukaryote abundance was also highly consistent with that of the subsurface Chl a maximum. Correlation analysis and generalized additive models of environmental factors showed that nutrient availability had a two-faceted role in regulating the spatial patterns of picophytoplankton in diverse latitudinal and meridional environments. We concluded through regression that temperature and light irradiance were the key determinants of picophytoplankton variability in the tropical western Pacific. This study provides insights into the changing picophytoplankton community structure with potential future changing hydroclimatic force.

Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary.

Microbes are sensitive indicators of estuarine processes because they respond rapidly to dynamic disturbance events. As most of the world's population lives in urban areas and climate change-related disturbance events are becoming more frequent, estuaries bounded by cities are experiencing increasing stressors, at the same time that their ecosystem services are required more than ever. Here, using a multidisciplinary approach, we determined the response of planktonic microbial assemblages in response to seasonality and a rainfall disturbance in an urban estuary bounded by Australia's largest city, Sydney. We used molecular barcoding (16S, 18S V4 rRNA) and microscopy-based identification to compare microbial assemblages at locations with differing characteristics and urbanisation histories. Across 142 samples, we identified 8,496 unique free-living bacterial zOTUs, 8,175 unique particle associated bacterial zOTUs, and 1,920 unique microbial eukaryotic zOTUs. Using microscopy, we identified only the top <10% abundant, larger eukaryotic taxa (>10µm), however quantification was possible. The site with the greater history of anthropogenic impact showed a more even community of associated bacteria and eukaryotes, and a significant increase in dissolved inorganic nitrogen following rainfall, when compared to the more buffered site. This coincided with a reduced proportional abundance of Actinomarina and Synechococcus spp., a change in SAR 11 clades, and an increase in the eukaryotic microbial groups Dinophyceae, Mediophyceae and Bathyoccocaceae, including a temporary dominance of the harmful algal bloom dinoflagellate Prorocentrum cordatum (syn. P. minimum). Finally, a validated hydrodynamic model of the estuary supported these results, showing that the more highly urbanised and upstream location consistently experienced a higher magnitude of salinity reduction in response to rainfall events during the study period. The best abiotic variables to explain community dissimilarities between locations were TDP, PN, modelled temperature and salinity (r=0.73) for the free living bacteria, TP for the associated bacteria (r=0.43), and modelled temperature (r=0.28) for the microbial eukaryotic communities. Overall, these results show that a minor disturbance such as a brief rainfall event can significantly shift the microbial assemblage of an anthropogenically impacted area within an urban estuary to a greater degree than a seasonal change, but may result in a lesser response to the same disturbance at a buffered, more oceanic influenced location. Fine scale research into the factors driving the response of microbial communities in urban estuaries to climate related disturbances will be necessary to understand and implement changes to maintain future estuarine ecosystem services.

Water column stratification governs picophytoplankton community structure in the oligotrophic eastern Indian ocean

Under the background of global warming, the area extent of the oligotrophic tropical oceans has growing due to increased water-column stratification over the past decades. Picophytoplankton is usually the most dominant phytoplankton group in oligotrophic tropical oceans and substantially contribute to carbon biomass and primary production three. Understanding how vertical stratification governs the community structure of picophytoplankton communities in oligotrophic tropical oceans is important for comprehensively understanding the plankton ecology and biogeochemical cycle in these areas. In this study, the distribution of the picophytoplankton communities in the eastern Indian Ocean (EIO) was investigated during a period of thermal stratification in the spring of 2021. Prochlorococcus contributed most (54.9%) to picophytoplankton carbon biomass, followed by picoeukaryotes (38.5%) and Synechococcus (6.6%). Vertically, the three picophytoplankton groups showed quite different distribution pattern: the abundance of Synechococcus was highest in the surface layer, while Prochlorococcus and picoeukaryotes were usually located between 50 m and 100 m. The relationship between the abundance of picophytoplankton and environmental factors was analyzed, and the results revealed that picophytoplankton distribution was strongly correlated with the degree of vertical stratification of the water column. The density of Synechococcus was higher in strongly stratified waters, while Prochlorococcus was more abundant in regions of weaker stratification. This is mainly attributed to variation of physicochemical parameters such as nutrient structures and temperature resulted from water column stratification. Understanding the distribution patterns of these organisms and their relationship with stratification in the oligotrophic EIO is essential for comprehensive understanding on oligotrophic tropical ecosystem with increasing stratification in future.

Microplastics Weaken the Adaptability of Cyanobacterium Synechococcus sp. to Ocean Warming.

Ocean warming (OW) caused by anthropogenic activities threatens ocean ecosystems. Moreover, microplastic (MP) pollution in the global ocean is also increasing. However, the combined effects of OW and MPs on marine phytoplankton are unclear. Synechococcus sp., the most ubiquitous autotrophic cyanobacterium, was used to evaluate the response to OW + MPs under two warming scenarios (28 and 32 °C compared to 24 °C). The enhancement of the cell growth rate and carbon fixation under OW were weakened by MP exposure. Specifically, OW + MPs reduced carbon fixation by 10.9 and 15.4% at 28 and 32 °C, respectively. In addition, reduction in photosynthesis pigment contents of Synechococcus sp. under OW was intensified under OW + MPs, supporting the lower growth rate and carbon fixation under OW + MPs. Transcriptome plasticity (the evolutionary and adaptive potential of gene expression in response to changing environments) enabled Synechococcus sp. to develop a warming-adaptive transcriptional profile (downregulation of photosynthesis and CO2 fixation) under OW. Nevertheless, the downregulation of photosynthesis and CO2 fixation were alleviated under OW + MPs to increase responsiveness to the adverse effect. Due to the high abundances of Synechococcus sp. and its contributions to primary production, these findings are important for understanding the effects of MPs on carbon fixation and ocean carbon fluxes under global warming.

Tracking the early signals of crude oil in seawater and plankton after a major oil spill in the Red Sea

Understanding the immediate impacts of oil spills is essential to recognizing their long-term consequences on the marine environment. In this study, we traced the early (within one week) signals of crude oil in seawater and plankton after a major oil spill in October 2019 in the Red Sea. At the time of sampling, the plume had moved eastward, but we detected significant signs of incorporation of oil carbon into the dissolved organic carbon pool, resulting in a 10–20% increase in the ultraviolet (UV) absorption coefficient (a254) of chromophoric dissolved organic matter (CDOM), elevated oil fluorescence emissions, and depletion of the carbon isotope composition (δ13C) of the seawater. The abundance of the picophytoplankton Synechococcus was not affected, but the proportion of low nucleic acid (LNA) bacteria was significantly higher. Moreover, specific bacterial genera (Alcanivorax, Salinisphaera, and Oleibacter) were enriched in the seawater microbiome. Metagenome-assembled genomes (MAGs) suggested that such bacteria presented pathways for growing on oil hydrocarbons. Traces of polycyclic aromatic hydrocarbons (PAHs) were also detected in zooplankton tissues, revealing the rapid entry of oil pollutants into the pelagic food web. Our study emphasizes the early signs of short-lived spills as an important aspect of the prediction of long-term impacts of marine oil spills.

Responses of Free-Living Planktonic Bacterial Communities to Experimental Acidification and Warming

Climate change driven by human activities encompasses the increase in atmospheric CO2 concentration and sea-surface temperature. Little is known regarding the synergistic effects of these phenomena on bacterial communities in oligotrophic marine ecosystems that are expected to be particularly vulnerable. Here, we studied bacterial community composition changes based on 16S rRNA sequencing at two fractions (0.1-0.2 and >0.2 μm) during a 10- day fully factorial mesocosm experiment in the eastern Mediterranean where the pH decreased by ~0.3 units and temperature increased by ~3 °C to project possible future changes in surface waters. The bacterial community experienced significant taxonomic differences driven by the combined effect of time and treatment; a community shift one day after the manipulations was noticed, followed by a similar state between all mesocosms at the third day, and mild shifts later on, which were remarkable mainly under sole acidification. The abundance of Synechococcus increased in response to warming, while the SAR11 clade immediately benefited from the combined acidification and warming. The effect of the acidification itself had a more persistent impact on community composition. This study highlights the importance of studying climate change consequences on ecosystem functioning both separately and simultaneously, considering the ambient environmental parameters.

THE UTILITY OF METAGENOMIC DATA FOR THE BLACK SEA ECOLOGICAL STATUS ASSESSMENT

According to Marine Strategy Framework Directive the assessment of marine ecosystems’ environmental status is performed with 11 Descriptors, which are based on biological, physical and chemical parameters. The biological indexes are calculated based on taxonomic structure and distribution of eukaryotic communities. Meanwhile, bacterioplankton is sensitive to anthropogenic impact and is thus a promising indicator of aquatic environment status. We have tested the utility of ecological pressure index (Pi) calculated with chemical data and bacterial community-based index (microgAMBI) for the assessment of Black sea waters ecological status. According to our estimations Pi varied depending on the chemical data used for its calculation, which indicates the necessity of using a wide range of xenobiotics in complex ecological status assessment. MicrogAMBI indicated that the Black sea surface waters can be characterized by “good” environmental status. “Moderate”, “poor” and “bad” ecological status was shown for 3 stations, yet there were no significant region-specific differences between the shelf zone and the open water. Actinomycetales, Halomonadaceae and Shewanella relative abundance was associated with higher microgAMBI estimations and respectively with worse ecological status. Meanwhile, positive correlation was found between Synechococcus, Acidimicrobiaceae, Pelagibacteraceae, Rhodobacteraceae, Microbacteriaceae, Polaribacter, Rhodothermaceae and Chloroflexi abundance and “good” ecological status. Microbial metagenomic data is promising for the complex assessmnet of Black sea waters ecological status, however, more research is needed to validate this approach. The development of metagenomic databases will contribite to increase in precision of microgAMBI calculation and subsequent ecological status analysis.

Non-targeted metabolomics and 16s rDNA reveal the impact of uranium stress on rhizosphere and non-rhizosphere soil of ryegrass

As a radioactive heavy metal element with a long half-life, uranium causes environmental pollution when it enters the surrounding soil. This study analyzed the changes about soil enzyme activity, non-targeted metabolomics, microbial community structure and function microbial community structure and function to assess the differences in the effects of uranium stress on rhizosphere and non-rhizosphere soil. Results showed that uranium stress significantly inhibited the activities of urease and sucrase in rhizosphere and non-rhizosphere, which had less effect on rhizosphere. Compare to the non-rhizosphere soil, the uranium stress induced the production of gibberellin A1, to promoted several metabolic pathways, such as nitrogen and PTS (Phosphotransferase system) metabolic in rhizosphere soil. The species and abundance of Aspergillus, Acidobacter, and Synechococcus in both rhizosphere and non-rhizosphere soil were decreased by uranium stress. However, the microorganisms in rhizosphere soil were less inhibited according to the soil metabolism and microbial network map analysis. Furthermore, the Chujaibacter in rhizosphere soil under uranium stress was found significantly positively correlated with lipid and organic oxygen compounds. Overall, the results indicated that ryegrass roots significantly alleviated the effects of uranium stress on soil microbial activity and population abundances, thus playing a protective role. The study also provided a theoretical basis for in-depth understanding of the biological effects, prevention and control mechanisms of uranium-contaminated soil.

Vertical distribution of picophytoplankton in the NW shelf and deep-water area of the Black Sea in spring

Structure and functions of picophytoplankton and their links to the water column density stratification and nutrient vertical profiles were studied in the Black Sea open waters along a transect from the Western Gyre to the NW shelf during spring homothermy in April of 2017. Abundances of picocyanobacteria of the genus Synechococcus (0.85 ± 0.96 (SD) × 10 3 cells ml −1 ) and eukaryotic picoalgae (5.74 ± 5.99 × 10 3 cells ml −1 ) and their intracellular pigment (chl a , phycoerythrin) contents were quantified using flow cytometry. The distribution of these variables in the upper 100-m layer was non-uniform. Along the whole transect, Synechococcus and picoeukaryote abundance maxima (up to 4 × 10 3 and 3 × 10 4 cells ml −1 , respectively) were observed at the water temperature of 8–8.5°С in the depth range between 30 and 40 m. Picoeukaryotes dominated the total community. The share of Synecococcus averaged about 22% and increased with depth up to 80%. Picophytoplankton abundance dropped abruptly through the oxycline but the cells were found in the suboxic layer at about 10 3 cells ml −1 and in a sample from the anoxic zone at 10 2 cells ml −1 . Intracellular chl a maxima were revealed in the nitrate peak at sigma- t density of 15.5. In the surface and suboxic layers, non-specific green autofluorescence (GAF) was detected in picophytoplankton cells that might provide evidence of their stress state in adverse environment. Multivariate analysis has revealed tight coupling between abiotic and microbiological variables in three statistically distinct pelagic regions of the transect, corresponding to the abyss, the continental slope and the shelf. • Picoeukaryotes dominated picophytoplankton but the proportion of Synecococcus increased with depth. • Picophytoplankton abundance dropped abruptly through oxycline but still survived in suboxic layer. • Non-specific green autofluorescence (GAF) was detected in picophytoplankton by flow cytometry. • Picophytoplankton GAF maxima were revealed in surface and suboxic layers, indicating stress conditions.

Characteristics and particularities of bacterial community variation in the offshore shellfish farming waters of the North Yellow Sea

Bacteria in coastal waters drive global biogeochemical cycling and are strongly related to coastal environmental safety. The bacterial community in offshore shellfish farming waters of North China has its own characteristics and particularities, while the knowledge is limited. In this study, the bacterial community characteristics, the particularities of bacterial community in the waters with surface cold patches (SCPs) and the variation of pathogenic bacteria were investigated in the offshore shellfish farming waters in the North Yellow Sea (NYS) from 2017 to 2019. For all studied samples, Desulfobacterales acted as the keystone species taxon in microbial co-occurrence networks, and the proportional abundance of Actinobacteriota was found to be as low as 1.3%. The abundance of Marinobacter and Synechococcus was remarkably prominent in 13 genera with nitrogen-transforming function. The top two different bacterial functions in the spatial analysis (between the waters with SCPs and the ambient waters) were xenobiotics biodegradation and metabolism and metabolism of cofactors and vitamins, which were same with that in the seasonal analysis (between spring and summer). The abundance differences of most pathogenic bacteria analyzed in this study (11 out of 12 genera) also had the same variation dynamics between the spatial analysis and the seasonal analysis. An ANN predictive model for Vibrio abundance was constructed for Vibrio forecasting, with acceptable predictive accuracy. According to the above results, the bacterial community in the shellfish aquaculture waters in this study was characterized by the enhancing ability of nitrogen removal. Temperature was concluded as the predominant environmental factor to drive the variation of bacterial community function and pathogenic bacteria patterns in the offshore shellfish farming waters with SCPs. The results of this study will further our understanding of the bacterial community characteristics in offshore shellfish farming waters, and help for Vibrio forecasting and coastal environmental safety in aquaculture seawater.