Synchrotron Radiation-based Fourier Transform Infrared Research Articles

OXIDATIVE STRESS CAUSED BY UV RADIATION AND THE USE OF FTIR METHOD TO STUDY ITS EFFECT ON THE BIOLOGICAL TISSUES

Oxidative stress is caused by an imbalance between reactive oxygen species (ROS) generation and the capacity of antioxidant ROS scavenging systems and plays an essential role in the pathogenesis of many diseases. It is connected with cell damage, such as lipid peroxidation of membranes. One important source of oxidative stress is UV radiation, which can come from the natural environment or artificial sources like welding. While sources of artificial UV radiation emit specific wavelengths depending on the application, occupational exposure to natural UV radiation has a continuous spectrum from 290 nm to 400 nm. Oxidative stress can be measured by synchrotron radiation-based Fourier Transform Infrared (SR-FTIR) microspectroscopy. Oxidative effect of UV can be studied on human postoperative tissue. Here we show an in vitro study of the effect of UV C on the oxidative stress in human eye postoperative tissue.

Identification of a Chitooligosaccharide Mechanism against Bacterial Leaf Blight on Rice by In Vitro and In Silico Studies.

This study focuses on a commercial plant elicitor based on chitooligosaccharides (BIG®), which aids in rice plant growth and disease resistance to bacterial leaf blight (BLB). When the pathogen (Xoo) vigorously attacks rice that has suffered yield losses, it can cause damage in up to 20% of the plant. Furthermore, Xoo is a seed-borne pathogen that can survive in rice seeds for an extended period. In this study, when rice seeds were soaked and sprayed with BIG®, there was a significant increase in shoot and root length, as well as plant biomass. Furthermore, BIG®-treated rice plants showed a significant reduction in BLB severity of more than 33%. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) analysis was used to characterize BIG®’s mechanism in the chemical structure of rice leaves. The SR-FTIR results at 1650, 1735, and 1114 cm−1 indicated changes in biochemical components such as pectins, lignins, proteins, and celluloses. These findings demonstrated that commercial BIG® not only increased rice growth but also induced resistance to BLB. The drug’s target enzyme, Xoo 1075 from Xanthomonas oryzae (PDB ID: 5CY8), was analyzed for its interactions with polymer ingredients, specifically chitooligosaccharides, to gain molecular insights down to the atomic level. The results are intriguing, with a strong binding of the chitooligosaccharide polymer with the drug target, revealing 10 hydrogen bonds between the protein and polymer. Overall, the computational analysis supported the experimentally demonstrated strong binding of chitooligosaccharides to the drug target.

Identification of Salicylic Acid Mechanism against Leaf Blight Disease in Oryza sativa by SR-FTIR Microspectroscopic and Docking Studies.

The present study was to investigate the application and mechanism of salicylic acid (SA) as SA-Ricemate for the control of leaf blight disease using a Synchrotron Radiation-based Fourier-Transform Infra-Red (SR-FTIR) microspectroscopy and docking studies. After treating rice plants cv. KDML 105 with SA-Ricemate, the leaves were inoculated with Xanthomonas oryzae pv. oryzae, the causal agent of leaf blight, and disease severity were assessed. The leaves were also used to detect changes in endogenous SA content. The results indicated that SA-Ricemate, as an activated compound, reduced disease severity by 60% at three weeks post-inoculation and increased endogenous content by 50%. The SR-FTIR analysis of changes in the mesophyll of leaves (treated and untreated) showed that the groups of lipids, pectins, and proteins amide I and amide II occurred at higher values, and polysaccharides were shown at lower values in treated compared to untreated. Besides, docking studies were used to model a three-dimensional structure for Pathogenesis-related (PR1b) protein and further identify its interaction with SA. The results showed that ASP28, ARG31, LEU32, GLN97, and ALA93 are important residues that have strong hydrogen bonds with SA. The docking results showed that SA has a good interaction, confirming its role in expression.

UV Effect on Human Anterior Lens Capsule Macro-Molecular Composition Studied by Synchrotron-Based FTIR Micro-Spectroscopy.

Ultraviolet (UV) irradiation is an important risk factor in cataractogenesis. Lens epithelial cells (LECs), which are a highly metabolically active part of the lens, play an important role in UV-induced cataractogenesis. The purpose of this study was to characterize cell compounds such as nucleic acids, proteins, and lipids in human UV C-irradiated anterior lens capsules (LCs) with LECs, as well as to compare them with the control, non-irradiated LCs of patients without cataract, by using synchrotron radiation-based Fourier transform infrared (SR-FTIR) micro-spectroscopy. In order to understand the effect of the UV C on the LC bio-macromolecules in a context of cataractogenesis, we used the SR-FTIR micro-spectroscopy setup installed on the beamline MIRAS at the Spanish synchrotron light source ALBA, where measurements were set to achieve a single-cell resolution with high spectral stability and high photon flux. UV C irradiation of LCs resulted in a significant effect on protein conformation with protein formation of intramolecular parallel β-sheet structure, lower phosphate and carboxyl bands in fatty acids and amino acids, and oxidative stress markers with significant increase of lipid peroxidation and diminishment of the asymmetric CH3 band.

Gymnema inodorum (Lour.) Decne. Extract Alleviates Oxidative Stress and Inflammatory Mediators Produced by RAW264.7 Macrophages.

Gymnema inodorum (Lour.) Decne. (G. inodorum) is widely used in Northern Thai cuisine as local vegetables and commercial herb tea products. In the present study, G. inodorum extract (GIE) was evaluated for its antioxidant and anti-inflammatory effects in LPS plus IFN-γ-induced RAW264.7 cells. Major compounds in GIE were evaluated using GC-MS and found 16 volatile compounds presenting in the extract. GIE exhibited antioxidant activity by scavenging the intracellular reactive oxygen species (ROS) production and increasing superoxide dismutase 2 (SOD2) mRNA expression in LPS plus IFN-γ-induced RAW264.7 cells. GIE showed anti-inflammatory activity through suppressing nitric oxide (NO), proinflammatory cytokine production interleukin 6 (IL-6) and also downregulation of the expression of cyclooxygenase-2 (COX-2), inducible nitric oxide synthase (iNOS), and IL-6 mRNA levels in LPS plus IFN-γ-induced RAW264.7 cells. Mechanism studies showed that GIE suppressed the NF-κB p65 nuclear translocation and slightly decreased the phosphorylation of NF-κB p65 (p-NF-κB p65) protein. Our studies applied the synchrotron radiation-based FTIR microspectroscopy (SR-FTIR), supported by multivariate analysis, to identify the FTIR spectral changes based on macromolecule alterations occurring in RAW264.7 cells. SR-FTIR results demonstrated that the presence of LPS plus IFN-γ in RAW264.7 cells associated with the increase of amide I/amide II ratio (contributing to the alteration of secondary protein structure) and lipid content, whereas glycogen and other carbohydrate content were decreased. These findings lead us to believe that GIE may prevent oxidative damage by scavenging intracellular ROS production and activating the antioxidant gene, SOD2, expression. Therefore, it is possible that the antioxidant properties of GIE could modulate the inflammation process by regulating the ROS levels, which lead to the suppression of proinflammatory cytokines and genes. Therefore, GIE could be developed into a novel antioxidant and anti-inflammatory agent to treat and prevent diseases related to oxidative stress and inflammation.

Investigation of carbon dynamics in rhizosphere by synchrotron radiation-based Fourier transform infrared combined with two dimensional correlation spectroscopy

Rhizosphere, formed via the input of root exudates, is one of the most dynamic biological interfaces on earth. Investigation of carbon dynamics in rhizosphere is thus crucial for the understanding of soil biogeochemical processes. Herein, synchrotron radiation-based Fourier transform infrared (SR-FTIR) combined with two dimensional correlation spectroscopy (2D-COS) was used to probe and identify the changes of chemical constituents and functional groups of organic carbon on the root/soil interface in rhizosphere of two plants [Leptochloa chinensis (L.) Nees and Cyperus rotundus L.]. The SR-FTIR results showed obviously heterogeneous distributions of functional groups in rhizosphere at microscale. Specifically, regardless of plant species, about 20–30 μm regions in rhizosphere can be affected by root activities. The peak area ratios of organic-OH and aliphatic-C to clay-OH on the root/soil interface in rhizosphere were 4.04–8.48 times higher than that in bulk soil, providing direct evidence of the organic carbon storage due to root activities. 2D-COS analysis suggested that the root activities induced the first adsorption or sequestration of newly organics (3350 cm−1) on the root/soil interface, followed by the destruction of clay-OH (3621 or 860 cm−1), leading to the release of mineral associated organics and nutrients (e.g., 1510 and 1150 cm−1) from the soil. These results can enlarge our knowledge on the concentration, distribution, and dynamics of organic carbon in rhizosphere at the microscale level and also the environmental behaviors and fate of other elements and contaminants that associated with organic carbon in rhizosphere. CapsuleSR-FTIR combined with 2D-COS can explore the distribution and dynamics of organic carbon on the root/soil interface in rhizosphere.

Synchrotron Radiation-Based FTIR Microspectroscopic Imaging of Traumatically Injured Mouse Brain Tissue Slices.

Traumatic brain injury (TBI) is a health problem of global concern because of its serious adverse effects on public health and social economy. A technique that can be used to precisely detect TBI is highly demanded. Here, we report on a synchrotron radiation-based Fourier transform infrared (SR-FTIR) microspectroscopic imaging technique that can be exploited to identify TBI-induced injury by examining model mouse brain tissue slices. The samples were first examined by conventional histopathological techniques including hematoxylin and eosin (H&E) staining and 2,3,5-triphenyltetrazolium chloride staining and then spectroscopically imaged by SR-FTIR. SR-FTIR results show that the contents of protein and nucleic acid in the injured region are lower than their counterparts in the normal region. The injured and normal regions can be unambiguously distinguished from each other by the principle component analysis of the SR-FTIR spectral data corresponding to protein or nucleic acid. The images built from the spectral data of protein or nucleic acid clearly present the injured region of the brain tissue, which is in good agreement with the H&E staining image and optical image of the sample. Given the label-free and fingerprint features, the demonstrated method suggests potential application of SR-FTIR spectroscopic mapping for the digital and intelligent diagnosis of TBI by providing spatial and chemical information of the sample simultaneously.

Synchrotron-based FTIR microspectroscopy of protein aggregation and lipids peroxidation changes in human cataractous lens epithelial cells

Cataract is the leading cause of blindness worldwide but the mechanisms involved in the process of cataractogenesis are not yet fully understood. Two most prevalent types of age-related cataracts are nuclear (N) and cortical (C) cataracts. A common environmental factor in most age-related cataracts is believed to be oxidative stress. The lens epithelium, the first physical and biological barrier in the lens, is build from lens epithelial cells (LECs). LECs are important for the maintenance of lens transparency as they control energy production, antioxidative mechanisms and biochemical transport for the whole lens. The purpose of this study is to characterize compounds in LECs originated from N and C cataracts, by using the synchrotron radiation-based Fourier Transform Infrared (SR-FTIR) microspectroscopy, in order to understand the functional importance of their different bio-macromolecules in cataractogenesis. We used the SR-FTIR microspectroscopy setup installed on the beamline MIRAS at the Spanish synchrotron light source ALBA, where measurements were set to achieve single cell resolution, with high spectral stability and high photon flux. The results showed that protein aggregation in form of fibrils was notably pronounced in LECs of N cataracts, while oxidative stress and the lipids peroxidation were more pronounced in LECs of C cataracts.

Determination and evaluation of secondary structure content derived from calcium-induced conformational changes in wild-type and mutant mnemiopsin 2 by synchrotron-based Fourier-transform infrared spectroscopy

Mnemiopsin 2 from a luminous ctenophore with two functional EF-hand motifs is a calcium-regulated photoprotein that is responsible for emitting a bright blue bioluminescence upon reacting with coelenterazine and calcium ions in Mnemiopsis leidyi. Synchrotron radiation-based Fourier-transform infrared (SR-FTIR) spectroscopy was applied to analyze the distribution of secondary structures, the conformational changes resulting from calcium binding and the structural stabilities in wild-type mnemiopsin 2, as well as its mutant type that possesses three EF-hand motifs. The distribution of secondary structures of these proteins indicates that mutant apo-mnemiopsin 2 has a more stable secondary structure than the wild-type. Analyses of the SR-FTIR spectra revealed that the conformational changes at the secondary structures of both mnemiopsin 2 depend on the calcium concentrations, such that the most noticeable changes in structures of wild-type and mutant mnemiopsin 2 occur at optimum concentrations 6 and 2 mM of calcium chloride, respectively. The addition of calcium to both proteins increases the proportions of their secondary structures in the amide I and II regions. The major amide I bands in the IR spectra of both mnemiopsin‑calcium complexes shift towards smaller wavenumbers, whereas their main amide II bands are identified at larger wavenumbers.

Biophysical Stress Responses of the Yeast Lachancea thermotolerans During Dehydration Using Synchrotron-FTIR Microspectroscopy.

During industrial yeast production, cells are often subjected to deleterious hydric variations during dehydration, which reduces their viability and cellular activity. This study is focused on the yeast Lachancea thermotolerans, particularly sensitive to dehydration. The aim was to understand the modifications of single-cells biophysical profiles during different dehydration conditions. Infrared spectra of individual cells were acquired before and after dehydration kinetics using synchrotron radiation-based Fourier-transform infrared (S-FTIR) microspectroscopy. The cells were previously stained with fluorescent probes in order to measure only viable and active cells prior to dehydration. In parallel, cell viability was determined using flow cytometry under identical conditions. The S-FTIR analysis indicated that cells with the lowest viability showed signs of membrane rigidification and modifications in the amide I (α-helix and β-sheet) and amide II, which are indicators of secondary protein structure conformation and degradation or disorder. Shift of symmetric C–H stretching vibration of the CH2 group upon a higher wavenumber correlated with better cell viability, suggesting a role of plasma membrane fluidity. This was the first time that the biophysical responses of L. thermotolerans single-cells to dehydration were explored with S-FTIR. These findings are important for clarifying the mechanisms of microbial resistance to stress in order to improve the viability of sensitive yeasts during dehydration.

Advanced methods for the analysis of Roman wall paintings: elemental and molecular detection by means of synchrotron FT-IR and SEM micro-imaging spectroscopy

The reconstruction of Roman decorative apparatus from delocalized fragments is an arduous challenge for the archaeologists. An archaeometric approach may integrate the archaeological analyses, based on the stylistic observations, improving the ability to merge adjacent fragments, especially in the absence of distinctive ornamental elements. In this work, the capacity of reflection FT-IR spectroscopy combined with chemometric tools to identify groups of fragments that have similar chemical composition of the pictorial layers is tested. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) microspectroscopy coupled with scanning electron microscopy (SEM) and energy-dispersive X-ray micro-analysis (EDX) performed on cross section were used to enhance the performance of conventional FT-IR technique and to localize micrometric-size compounds. The chemometric approach proposed in this work turns out to be a powerful way to discriminate pictorial layers with similar chemical composition, by the identification of different compounds. The use of SR source has permitted to improve the lateral resolution and to discriminate neighboring micro-compounds, such as quartz and cuprorivaite in Egyptian blue pigments.

Intracellular ROS Scavenging and Anti-Inflammatory Activities of Oroxylum indicum Kurz (L.) Extract in LPS plus IFN-γ-Activated RAW264.7 Macrophages.

Oroxylum indicum (L.) Kurz has been used as plant-based food and herbal medicine in many Asian countries. The aim of the present study was to examine the antioxidant and anti-inflammatory activities of O. indicum extract (O. indicum) in RAW264.7 cells activated by LPS plus IFN-γ. The phytochemical compounds in O. indicum were identified by GC-MS and LC-MS/MS. Five flavonoids (luteolin, apigenin, baicalein, oroxylin A, and quercetin) and 27 volatile compounds were found in O. indicum. O. indicum presented antioxidant activities, including reducing ability by FRAP assay and free radical scavenging activity by DPPH assay. Moreover, O. indicum also suppressed LPS plus IFN-γ-activated reactive oxygen species generation in RAW264.7 macrophages. It possessed the potent anti-inflammatory action through suppressing nitric oxide (NO) and IL-6 secretion, possibly due to its ability to scavenge intracellular ROS. The synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectroscopy results showed the alteration of signal intensity and integrated areas relating to lipid and protein of the activated RAW264.7 macrophages compared to unactivated cells. This is the first report of an application of the SR-FTIR technique to evaluate biomolecular changes in activated RAW264.7 cells. Our results indicate that O. indicum may be used as a potential source of nutraceutical for the development of health food supplement or a novel anti-inflammatory herbal medicine.

Characterization of cataract patients’ lens epithelial cells by using synchrotron based FTIR

AbstractPurposeThe mechanisms involved in the process of cataract formation are not yet fully understood. Lens epithelial cells (LECs) are important for the maintenance of lens transparency as they control energy production, antioxidative mechanisms and biochemical transport for the whole lens. The purpose of this study is to characterize LECs compounds of two different cataract types, nuclear (N) and cortical (C), by using the high resolution synchrotron radiation‐based Fourier Transform Infrared (SR‐FTIR) microspectroscopy.MethodsThe anterior lens capsule (basement membrane and associated LECs) were obtained from cataract surgery and prepared by desiccation for FTIR. Measurements were set to achieve single cell resolution. Data obtained by SR‐FTIR have been analysed by comparing all spectra of N type and C type LECs. The average spectra of each group have been calculated and principal component analysis (PCA) has been performed.ResultsThe first component of the PCA in Amide I area of spectra showed the most prominent contribution at 1625 cm‐1 which is associated with beta sheet organisation in protein aggregates in N cataract type. In the C type we found proteins organized more in the turn and loops conformation (~1670 cm‐1). The markers of oxidative stress: ratios of the asymmetric vibration CH2 and CH3, as well as C=O/lipids showed an increase in C cataract type LECs that pointed out to an increase in lipid peroxidation in this type of LECs. The region corresponds to the P=O asymmetric bands indicate possible difference in protein phosphorylation in C and N types LECs.ConclusionsHere we evaluated the proteins conformation changes, as well as lipids and phosphates bands in LECs of two different cataract types. The oxidative stress and the lipids peroxidation were more pronounced in C type, while protein aggregation is associated with N type. These spectral changes can be assigned to specific biochemical processes occur in two different cataract types LECs.

Synchrotron radiation-based FTIR spectro-microscopy of the brainstem of the hSOD1 G93A rat model of amyotrophic lateral sclerosis.

Pathological mechanisms in amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease, are still poorly understood. One subset of familial ALS cases is caused by mutations in the metallo-enzyme copper-zinc superoxide dismutase (SOD1), increasing the susceptibility of the SOD1 protein to form insoluble intracellular aggregates. Here, we employed synchrotron radiation-based Fourier transform infrared spectroscopy and microscopy to investigate brainstem cross-sections from the transgenic hSOD1 G93A rat model of ALS that overexpresses human-mutated SOD1. We compared the biomacromolecular organic composition in brainstem tissue cross-sections of ALS rats and their non-transgenic littermates (NTg). We demonstrate that the proteins and especially their antiparallel β-sheet structure significantly differed in all three regions: the facial nucleus (FN), the gigantocellular reticular nucleus (GRN) and the trigeminal motor nucleus (TMN) in the brainstem tissue of ALS rats. The protein levels varied between different brainstem areas, with the highest concentration observed in the region of the FN in the brainstem tissue of NTg animals. Furthermore, the concentration of lipids and esters was significantly decreased in the TMN and FN of ALS animals. A similar pattern was detected for choline and phosphate assigned to nucleic acids with the highest concentrations in the FN of NTg animals. The spectroscopic analysis showed significant differences in phosphates, amide and lipid structure in the FN of NTg animals in comparison with the same area of ALS rats. These results show that the hG93A SOD1 mutation causes metabolic cellular changes and point to a link between bioorganic composition and hallmarks of protein aggregation.

Iron oxides selectively stabilize plant‐derived polysaccharides and aliphatic compounds in agricultural soils

AbstractA strong link exists between iron oxides and soil organic carbon (SOC). However, the role of iron oxides in the preservation of SOC in agricultural soil remains poorly understood. In this study, we comprehensively examined the concentration, molecular composition and biological sources of iron oxide‐bound organic carbon (Fe‐bound OC) in arable soils collected from 12 sites in central and east China. The results indicated that 6.2–31.2% of the SOC was bound to iron oxides in agricultural soil and that the binding mechanisms varied from adsorption in most soils to coprecipitation in those with a large content of organic carbon. The distribution of Fe‐bound OC showed no clear variation in relation to site, but Fe‐bound OC reached a peak in soils with an annual mean temperature of 16.4°C. Correlation analysis demonstrated that TOC might be the main determinant for the amount of Fe‐bound OC and that the binding mechanism is influenced by both TOC and the active Fe ratio. Comprehensive studies of C/N, 13C isotope and synchrotron radiation‐based Fourier transform infrared (SR‐FTIR) spectroscopy showed that iron oxides selectively protected plant‐derived aliphatic compounds and polysaccharides in agricultural soil. This study revealed the quantitative characterization, biological sources and molecular composition of Fe‐bound OC in arable soils, which provides useful information for evaluating and managing the global C cycle under the framework of climate change.

Micro-colonization of arsenic-resistant Staphylococcus sp. As-3 on arsenopyrite (FeAsS) drives arsenic mobilization under anoxic sub-surface mimicking conditions

We investigated the subsurface biomatrix of the most abundant As-mineral, arsenopyrite (FeAsS), and meticulously studied a potential biogenic arsenic mobilization phenomenon. An arsenic-resistant [up to 7.5 mM As(III) and 200 mM As(V)] and arsenate-reducing bacterial strain (Staphylococcus sp. As-3) was isolated from a sediment core sample taken from the Budai borehole, on the southwestern coast of Taiwan. Isolate As-3 could reduce 5 mM As(V) to 3.04 mM in 96 h, generating 1.6 mM As(III) under anoxic conditions. Isolate As-3, which adsorbed As(V) up to 19.02 mg g−1 (cdw) and As(III) up to 0.46 mg g−1 (cdw), demonstrated effective As-bioaccumulating ability, as corroborated by a TEM-EDS analysis. Under anaerobic batch conditions, isolate As-3 micro-colonies could grow on as well as interact with arsenopyrite (FeAsS), mobilizing arsenic into soluble phase as As(III) and As(V). Using synchrotron radiation-based FTIR micro-spectroscopy, various functional group signatures and critical chemical bonds enabling a direct interaction with arsenopyrite were underpinned, such as a potential P-OFe bond involved in facilitating bacteria-mineral interaction. Using atomic force microscopy, we analyzed the scattered bacterial cell arrangement and structure and measured various biomechanical properties of micro-colonized Staphylococcus sp. As-3 cells on arsenopyrite. We suggest that the release of organic acids from As-3 drives soluble arsenic release in the aqueous phase under anoxic conditions through oxidative dissolution. Furthermore, arsC-encoding putative cytoplasmic arsenic reductase sequencing and transcript characterization indicated that arsC plays a possible role in the reduction of moderately soluble As(V) to highly soluble toxic As(III) under anoxic conditions. Thus, we suggest that firmicutes such as Staphylococcus sp. As-3 may play an important role in microbially-mediated arsenic mobilization, leading to arsenic release in the sub-surface niche.

A new strategy for assessing the binding microenvironments in intact soil microaggregates

Adsorption to soil minerals and occlusion within soil aggregates are two critical mechanisms to shield soil organic carbon (SOC) from microbial decomposition. Here, we combined the synchrotron radiation based Fourier transform infrared (SR-FTIR) spectroscopy, synchrotron radiation based micro X-ray fluorescence microscopy (μ-XRF) and two-dimensional correlation spectroscopy (2DCOS) analysis to in situ visualize the interiors of intact microaggregates from a typical Ferralic Cambisol in China, which had endured 25-year organic fertilization. Results showed that the spatial distribution and correlation between clay clusters and biopolymers were heterogeneous and significant, and also demonstrated that clay clusters were associated as nuclei with the potential of binding carbon at the submicron scale. Furthermore, the combination of SR-FTIR mapping and 2DCOS analysis could explore the strategy of identifying overlapped spectra and quantifying the sequestration reactivity for the first time. Specifically, carbon retention correlated as the binding sequence orders: 3630 cm−1 > 3610 cm-1, 985 cm-1 > 898 cm-1, indicating that Fe/Al oxyhydroxides and phyllosilicates could regulate the organic matter sequestration without the influence of spatial perturbations. Together, we conclude a combined methodology to assess the heterogeneous binding microenvironments between the mineral assemblages and biopolymers, which could also contribute to understand the process of carbon sequestration interrestrial ecosystems.

Synchrotron infrared spectral regions as signatures for foodborne bacterial typing

Fourier-transform infrared (FTIR) spectroscopy has emerged as a viable alternative to biochemical and molecular biology techniques for bacterial typing with advantages such as short analysis time, low cost and laboratorial simplicity. In this study, synchrotron radiation-based FTIR (SR-FTIR) spectroscopy with higher spectral quality was successfully applied to type 16 foodborne pathogenic bacterial strains. Combined with principal component analysis (PCA) and hierarchical cluster analysis (HCA), we found that the specific spectral region 1300–1000 cm−1, which reflects the information of phosphate compounds and polysaccharides, can be used as the signature region to cluster the strains into groups similar with genetic taxonomic method. These findings demonstrated that FTIR spectra combined with HCA have a great potential in quickly typing bacteria depending on their biochemical signatures.

Synchrotron FTIR and Raman spectroscopy provide unique spectral fingerprints for Arabidopsis floral stem vascular tissues.

Cell walls are highly complex structures that are modified during plant growth and development. For example, the development of phloem and xylem vascular cells, which participate in the transport of sugars and water as well as providing support, can be influenced by cell-specific wall composition. Here, we used synchrotron radiation-based Fourier-transform infrared (SR-FTIR) and Raman spectroscopy to analyse the cell wall composition of floral stem vascular tissues of wild-type Arabidopsis and the double-mutant sweet11-1 sweet12-1, which has impaired sugar transport. The SR-FTIR spectra showed that in addition to modified xylem cell wall composition, phloem cell walls in the double-mutant line were characterized by modified hemicellulose composition. Combining Raman spectroscopy with a classification and regression tree (CART) method identified combinations of Raman shifts that could distinguish xylem vessels and fibers. In addition, the disruption of the SWEET11 and SWEET12 genes impacted on xylem wall composition in a cell-specific manner, with changes in hemicelluloses and cellulose observed at the xylem vessel interface. These results suggest that the facilitated transport of sugars by transporters that exist between vascular parenchyma cells and conducting cells is important in ensuring correct phloem and xylem cell wall composition.

Strategy for Microscale Characterization of Soil Mineral‐Organic Associations by Synchrotron‐Radiation‐Based FTIR Technology

Core Ideas The spatial arrangements of soil MOAs are highly heterogeneous. The processes of carbon binding in different soil types are different. Combination of SR‐FTIR mapping and 2DCOS could in situ characterize the sequences of MOAs. Direct characterization of spatial distribution and binding environments of soil mineral‐organic associations (MOAs) are imperative for understanding the mechanism of C storage. Here, we propose a new strategy of synchrotron‐radiation‐based Fourier transform‐infrared (SR‐FTIR) technology and two‐dimensional FTIR correlation spectroscopy (2DCOS) analysis to simultaneously characterize the MOAs extracted from two types of soil, which one is classiðed as Ferralic Cambisol and another is Typic Hapludoll. This study successfully showed the spatial heterogeneity by SR‐FTIR mapping, which illustrated that the different soil types had different spatial arrangements at the microscale scale. Moreover, the overlapped one‐dimensional (1D) SR‐FTIR spectra and various sequence orders in two types of soil were demonstrated by 2DCOS analysis. The results showed that the intra hydrogen bonds in clay‐OH minerals and Si‐O‐metal bonds were more highly reactive in the Ferralic Cambisol soils than that in the Typic Hapludoll soils, which was critical for understanding the binding processes in soil micro‐environments.