HomePlant DiseaseVol. 101, No. 10First Report of Grapevine fabavirus in Diverse Vitis Species in Korea PreviousNext DISEASE NOTES OPENOpen Access licenseFirst Report of Grapevine fabavirus in Diverse Vitis Species in KoreaY. Jo, M. K. Song, H. Choi, J. S. Park, J. W. Lee, and W. K. ChoY. JoSearch for more papers by this author, M. K. SongSearch for more papers by this author, H. ChoiSearch for more papers by this author, J. S. ParkSearch for more papers by this author, J. W. Lee†Corresponding authors: J. W. Lee, E-mail Address: [email protected]; and W. K. Cho, E-mail Address: [email protected]Search for more papers by this author, and W. K. Cho†Corresponding authors: J. W. Lee, E-mail Address: [email protected]; and W. K. Cho, E-mail Address: [email protected]Search for more papers by this authorAffiliationsAuthors and Affiliations Y. Jo , Department of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea M. K. Song , Grape Research Institute, Chungbuk Agricultural Research and Extension Services, Okcheon, 29017, Republic of Korea H. Choi , Department of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea J. S. Park J. W. Lee † , Grape Research Institute, Chungbuk Agricultural Research and Extension Services, Okcheon, 29017, Republic of Korea W. K. Cho † , Department of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea. Published Online:26 Jul 2017https://doi.org/10.1094/PDIS-04-17-0513-PDNAboutSections ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinked InRedditEmailWechat Grapevine fabavirus (GFabV) is a novel virus that has been recently identified from two Japanese table grapes, Vitis vinifera cvs. Black Beet (BB) and Nagano Purple (NP), derived from South Korea in 2013 (Al Rwahnih et al. 2016). GFabV is a putative member of the genus Fabavirus in the family Secoviridae. The genome of GFabV consists of two RNA fragments named RNA1 and RNA2. To date, GFabV has been identified in North America, India, South Korea, and China (Al Rwahnih et al. 2016; Fan et al. 2017). In 2016, we sampled grapevine leaves from 16 individual grapevine plants representing 12 different grapevine cultivars. Except for a Shine Muscat (V. labruscana Bailey × V. vinifera) plant sampled from a vineyard in Okcheon, all 15 grapevine plants were grown in the Grape Research Institute. Only two grapevine plants of the Shine Muscat cultivar showed viral disease symptoms such as leaf malformations, vein clearing, and yellowing, whereas the other 14 plants did not display any visible disease symptoms. Sixteen libraries were paired-end sequenced using Illumina’s HiSeq 2000 followed by bioinformatics analyses as described previously (Jo et al. 2016). We identified 143 GFabV-associated contigs (75 contigs for RNA1 and 68 contigs for RNA2) ranging from 215 to 5,804 bp from 11 libraries. The GFabV-infected grapevine plants were as follows: Campbell Early (V. labruscana) (two plants), 188-08 (V. monticola × V. riparia) (two plants), Jaok (Vitis hybrid), Shine Muscat (two plants), Chungporang (Vitis hybrid), Okrang (Vitis hybrid), Chungrang (Vitis hybrid), and Jarang (V. vinifera). We assembled two nearly complete genomes for isolate 188-08 (5,675-nt RNA1 and 3,069-nt RNA2) and isolate Shine Muscat (5,804-nt RNA1 and 3,137-nt RNA2). However, four V. vinifera cultivars (i.e., Alicante, Cabernet franc, Cabernet Sauvignon, and Chardonnay) were not infected by GFabV. To confirm the NGS results, we carried out RT-PCR using known GFab-RNA1-specific primers and GFab-RNA2-specific primers (Al Rwahnih et al. 2016). The 642-bp products were amplified from seven cultivars but not from Shine Muscat using GFab-RNA1-specific primers. The 628-bp products were amplified from only two plants of Shine Muscat using GFab-RNA2-specific primers. This result suggests that at least two different primer pairs should be applied to detect GFabV due to their sequence diversity. The 642-bp amplified products from 188-08 and Campbell Early were cloned in the pGEM-T-Easy Vector (Promega, Wisconsin, U.S.A.) followed by Sanger sequencing. The amplified sequences (GenBank KY808370 and KY808371) confirmed that both isolates shared 99% of the nucleotide identity with the known isolate NP. Based on our result, diverse Vitis spp. including V. labruscana and other Vitis hybrids grown in the Grapevine Research Institute except imported grapevine cultivars belonging to V. vinifera have been infected by GFabV. Our results revealed a high prevalence of GFabV in important grapevine cultivars in Korea. Furthermore, a majority of grapevine plants infected by GFabV was asymptomatic; however, the possible role of the isolates of GFabV from Shine Muscat showing disease symptoms should be further studied. Taken together, this is the first report of GFabV infecting diverse Vitis spp. in Korea.