Surface Biosphere Research Articles

Light Stress in Yeasts: Signaling and Responses in Creatures of the Night.

Living organisms on the surface biosphere are periodically yet consistently exposed to light. The adaptive or protective evolution caused by this source of energy has led to the biological systems present in a large variety of organisms, including fungi. Among fungi, yeasts have developed essential protective responses against the deleterious effects of light. Stress generated by light exposure is propagated through the synthesis of hydrogen peroxide and mediated by regulatory factors that are also involved in the response to other stressors. These have included Msn2/4, Crz1, Yap1, and Mga2, thus suggesting that light stress is a common factor in the yeast environmental response.

Observing System Choice Can Minimize Interference of the Biosphere in Studies of Urban CO2 Emissions

AbstractCities around the world have introduced initiatives to reduce CO2 emissions. Atmospheric observations can provide evaluation and assessment of these initiatives by quantifying emissions, considering local sources and sinks. The relative importance of the urban biosphere, which can act as both a source (respiration) and sink (photosynthesis) of CO2, has previously been suggested to strongly impact urban CO2 measurements, confounding the ability to use observations to study fossil emissions. However, if using an observing framework that measures a local urban background and the direct urban core outflow, for example, along a downwind airborne transect, the biosphere’s role may be minimized. Here, we combine real, airborne observations of CO2 downwind of select cities in the Northeast US with high‐resolution, back‐trajectory modeling and spatially and temporally resolved surface biosphere and fossil fuel fluxes to characterize the relative biosphere importance to urban CO2 profiles. We show the biosphere influence using this urban observing system to be small, averaging only 15% of the local CO2 enhancement annually, <10% outside of summer, and with a maximum influence of 29% in summer when the biosphere drawdown is most pronounced. Furthermore, when considering two biosphere models that differ by >80%, the impact on observed urban CO2 signals is reduced to only 12% on average. Urban observing frameworks that utilize this local background approach—including those via aircraft or satellite observations—can minimize the biosphere's influence and thus help facilitate robust assessments of urban fossil fuel CO2 emissions.

Identification of areas of interest for radiological impact assessments in an evolving landscape context

Regulations concerning potential future health impacts of the final disposal of radioactive wastes in geological disposal facilities are written in terms of annual dose to individuals who are representative of small groups living in the landscape in the vicinity of the repository site. As disposal programmes in Sweden and Finland have progressed towards licensing and construction, so too has detail describing the state and evolution of surface biosphere and the landscape around the proposed disposal sites increased. Simple and generic biosphere dose assessment models in early iterations have grown in complexity with increasing site-specific detail that aims to capture the radiologically significant features of the landscape into which future releases of radionuclides might credibly occur. Current dose assessment models used in support of license applications for disposal programmes in Sweden and Finland are highly complex and their application consequently lacks transparency. An alternative simpler approach to characterising landscape objects for dose assessment models would be beneficial in that it would offer an additional line of reasoning and would add clarity, thereby supporting the decision-making process of the regulatory authorities.In the context of coastal Fennoscandia, landscape change is relatively rapid and dramatic with post-glacial landrise transforming areas of the coastal seabed into terrestrial ecosystems over a period of a few thousand years, global sea level rise notwithstanding. The locations of the geosphere-biosphere interfaces for deep geologic disposal can be estimated with some precision but the nature of the receiving ecosystems at the time of the release is less certain.The approach described here provides a statistical quantification of key morphological characteristics of areas in the landscape where doses could arise, so as to better express uncertainties in dose modelling. The proposed method assumes that the variation in the morphology of potential release locations can be described by the variation in landscape objects seen in the landscape on a wider scale, providing a statistical description of the possible landscape objects, so allowing a more comprehensive range of potential future evolutions to be addressed.Our understanding of the evolution of the landscape, based on the kinds of terrain and ecosystem development models used by POSIVA in Finland and SKB in Sweden, suggests that objects identified in present-day maps can be used as analogues for a statistical characterisation of objects in the future landscape; objects identified in the observed topography and bathymetry can therefore serve as the basis for the statistical description of landscape dose objects over the period during which doses are likely to arise. Using digital elevation models around a disposal site in Finland, we show that the statistical descriptions of landscape dose objects at three times over a period of 10 kyear of the evolved landscape are sufficiently similar to establish the suitability of the approach.The aim of this statistical analysis is to supplement current methods for defining radiological assessment models so as to provide additional numerical support to both the simpler and more complex methods employed by implementors and regulators. The method has been developed in the context of the Swedish and Finnish regulatory review process and is referred to in the IAEA's revised BIOMASS methodology. We briefly address how the method might be applied in other landscape contexts.

Advances in Defining Ecosystem Functions of the Terrestrial Subsurface Biosphere.

The subsurface is one of the last remaining ‘uncharted territories’ of Earth and is now accepted as a biosphere in its own right, at least as critical to Earth systems as the surface biosphere. The terrestrial deep biosphere is connected through a thin veneer of Earth’s crust to the surface biosphere, and many subsurface biosphere ecosystems are impacted by surface topography, climate, and near surface groundwater movement and represent a transition zone (at least ephemerally). Delving below this transition zone, we can examine how microbial metabolic functions define a deep terrestrial subsurface. This review provides a survey of the most recent advances in discovering the functional and genomic diversity of the terrestrial subsurface biosphere, how microbes interact with minerals and obtain energy and carbon in the subsurface, and considers adaptations to the presented environmental extremes. We highlight the deepest subsurface studies in deep mines, deep laboratories, and boreholes in crystalline and altered host rock lithologies, with a focus on advances in understanding ecosystem functions in a holistic manner.

The proper choice of proxies for relevant strontium isotope baselines used for provenance and mobility studies in glaciated terranes – Important messages from Denmark

Strontium (Sr) isotope based provenance and mobility studies of ancient humans and animals necessitate representative isoscapes/baselines. However, regions/terranes that were shaped and affected by glaciers during the last Ice Ages and are covered by glaciogenic sediments present a challenge with regards to the choice of suitable surface proxy archives. Recent studies proposed that only 87Sr/86Sr signatures from pristine areas are relevant for this purpose.To test this theory, 160 new Sr concentrations [Sr] and 87Sr/86Sr signatures composed from ~960 subsamples of soil leachates and plants, complemented with 55 surface waters from agriculturally unaffected pristine forest sites from all over Denmark (island of Bornholm excluded) were analyzed. The results reveal that average 87Sr/86Sr signatures of all three proxies (plants: 0.7115 ± 0.0025; 2σ, n = 162; soil leachates: 0.7118 ± 0.0037; 2σ; n = 161, surface waters: 0.7104 ± 0.0030; 2σ, n = 55) are elevated compared to larger water bodies (creeks, rivers, lakes). In mixing diagrams, the data converge in a shared high [Sr] low 87Sr/86Sr endmember, which points to either remnant natural carbonates and/or organic components retaining carbonate Sr in the studied Podzols/Luvisols. The indications for more abundant carbonates in the past, compared to today's acid leached soils, implies that 87Sr/86Sr values measured from pristine forest locations and heathlands do not adequately reflect the biosphere compositions that prevailed ~12,000–2000 thousand years ago. Consequently, pristine forests in Denmark seem to be unsuitable proxy archive environments for constructing Sr isotope baselines for determining the provenance and mobility of ancient humans and animals. Hence, 87Sr/86Sr values measured in these pristine areas are non-representative and inadequate, and their use will lead to wrong interpretations.Finally, our study sheds light on the complexity of defining relevant and representative isoscapes/baselines in significantly changing environments and areas where the surface biosphere conditions do not necessary reflect the underlying geology.

The darkest microbiome-a post-human biosphere.

SummaryMicrobial technology is exceptional among human activities and endeavours in its range of applications that benefit humanity, even exceeding those of chemistry. What is more, microbial technologists are among the most creative scientists, and the scope of the field continuously expands as new ideas and applications emerge. Notwithstanding this diversity of applications, given the dire predictions for the fate of the surface biosphere as a result of current trajectories of global warming, the future of microbial biotechnology research must have a single purpose, namely to help secure the future of life on Earth. Everything else will, by comparison, be irrelevant. Crucially, microbes themselves play pivotal roles in climate (Cavicchioli et al., Nature Revs Microbiol 17: 569–586, 2019). To enable realization of their full potential in humanity’s effort to survive, development of new and transformative global warming‐relevant technologies must become the lynchpin of microbial biotechnology research and development. As a consequence, microbial biotechnologists must consider constraining their usual degree of freedom, and re‐orienting their focus towards planetary‐biosphere exigences. And they must actively seek alliances and synergies with others to get the job done as fast as humanly possible; they need to enthusiastically embrace and join the global effort, subordinating where necessary individual aspirations to the common good (the amazing speed with which new COVID‐19 diagnostics and vaccines were developed and implemented demonstrates what is possible given creativity, singleness of purpose and funding). In terms of priorities, some will be obvious, others less so, with some only becoming revealed after dedicated effort yields new insights/opens new vistas. We therefore refrain from developing a priority list here. Rather, we consider what is likely to happen to the Earth’s biosphere if we (and the rest of humanity) fail to rescue it. We do so with the aim of galvanizing the formulation and implementation of strategic and financial science policy decisions that will maximally stimulate the development of relevant new microbial technologies, and maximally exploit available technologies, to repair existing environmental damage and mitigate against future deterioration.

The future lifespan of Earth’s oxygenated atmosphere

Earth's modern atmosphere is highly oxygenated and is a remotely detectable signal of its surface biosphere. However, the lifespan of oxygen-based biosignatures in Earth's atmosphere remains uncertain, particularly for the distant future. Here we use a combined biogeochemistry and climate model to examine the likely timescale of oxygen-rich atmospheric conditions on Earth. Using a stochastic approach, we find that the mean future lifespan of Earth's atmosphere with oxygen levels more than 1% of the present atmospheric level is 1.08+-0.14 billion years. The model projects that a deoxygenation of the atmosphere, with atmospheric oxygen dropping sharply to levels reminiscnet of the Archaean Earth, will most probably be triggered before the inception of moist greenhouse conditions in Earth's climate system and before the extensive loss of surface water from the atmosphere. We find that future deoxygenation is an inevitable consequence of increasing solar fluxes, whereas its precise timing is modulated by the exchange flux of reducing power between the mantle and the ocean-atmosphere-crust system. Our results suggest that the planetary carbonate-silicate cycle will tend to lead to terminally CO2-limited biospheres and rapid atmospheric deoxygenation, emphasizing the need for robust atmospheric biosignatures applicable to weakly oxygenated and anoxic exoplanet atmospheres and highlighting the potential importance of atmospheric organic haze during the terminal stages of planetary habitability.

The North American Solar Eclipse of 2017: Observations on the Surface Biosphere, Time Responses and Persistence

Observations of the near-surface components of the vegetated terrestrial air–surface system during and around the complete solar eclipse of 21 August 2017 were made in the U.S.A. at three sites of intensive measurement in Tennessee and at a number of locations in Idaho. Data obtained relate to a variety of surfaces, from barren to forest. Results reveal details of how the atmospheric, vegetative, and soil components of the ecosystem respond to a short-term change in incoming radiation. In particular, the role of vegetation as it contributes to thermal storage is demonstrated. The observations enable examination of the lags involved as the influence of the reduction in incoming radiation propagates through the environment. The variety of sites reveals the following: (a) the change in the surface temperature as measured using infrared thermometry followed quickly after the change in incoming solar radiation; (b) the sensible heat flux became negative for about 30 min around the time of the total eclipse; (c) CO2 fluxes reversed in sign; (d) latent heat fluxes continued after the sensible heat flux reversed in sign (these last two observations indicate the role of soil efflux of CO2 and water vapour); (e) changes in air temperature lagged, dependent upon surface vegetation and the observation height; (f) the lull in wind speed commonly associated with an eclipse was observed to be shallow, extending vertically to a few tens of metres; and (g) the magnitude of the air-temperature response to the eclipse depended on site-specific factors, but a few tens of metres above the surface the site-specificity disappeared.

Microbiome transplants to save the planetary surface biosphere.

Environmental Microbiology ReportsVolume 13, Issue 1 p. 50-53 Crystal Ball Microbiome transplants to save the planetary surface biosphere Kenneth Timmis, Corresponding Author Kenneth Timmis [email protected] orcid.org/0000-0002-0066-4670 Institute for Microbiology, Technical University Braunschweig, Germany For correspondence. E-mail [email protected].Search for more papers by this author Kenneth Timmis, Corresponding Author Kenneth Timmis [email protected] orcid.org/0000-0002-0066-4670 Institute for Microbiology, Technical University Braunschweig, Germany For correspondence. E-mail [email protected].Search for more papers by this author First published: 16 November 2020 https://doi.org/10.1111/1758-2229.12906 This piece is the latest in the Microbiome Yarns series (for the last, see Timmis et al, 2019). It is not intended to be taken (too) seriously. But then…. Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Volume13, Issue1February 2021Pages 50-53 RelatedInformation

Oceanographic Considerations for Exoplanet Life Detection

Abstract Liquid water oceans are at the center of our search for life on exoplanets because water is a strict requirement for life as we know it. However, oceans are dynamic habitats—and some oceans may be better hosts for life than others. In Earth’s ocean, circulation transports essential nutrients such as phosphate and is a first-order control on the distribution and productivity of life. Of particular importance is upward flow from the dark depths of the ocean in response to wind-driven divergence in surface layers. This “upwelling” returns essential nutrients that tend to accumulate at depth via sinking of organic particulates back to the sunlit regions where photosynthetic life thrives. Ocean dynamics are likely to impose constraints on the activity and atmospheric expression of photosynthetic life in exo-oceans as well, but we lack an understanding of how ocean dynamics may differ on other planets. We address this issue by exploring the sensitivity of ocean dynamics to a suite of planetary parameters using ROCKE-3D, a fully coupled ocean–atmosphere general circulation model. Our results suggest that planets that rotate slower and have higher surface pressure than Earth may be the most attractive targets for remote life detection because upwelling is enhanced under these conditions, resulting in greater nutrient supply to the surface biosphere. Seasonal deepening of the mixed layer on high-obliquity planets may also enhance nutrient replenishment from depth into the surface mixed layer. Efficient nutrient recycling favors greater biological activity, more biosignature production, and thus more detectable life. More generally, our results demonstrate the importance of considering oceanographic phenomena for exoplanet life detection and motivate future interdisciplinary contributions to the emerging field of exo-oceanography.

The genome of a subterrestrial nematode reveals adaptations to heat

The nematode Halicephalobus mephisto was originally discovered inhabiting a deep terrestrial aquifer 1.3 km underground. H. mephisto can thrive under conditions of abiotic stress including heat and minimal oxygen, where it feeds on a community of both chemolithotrophic and heterotrophic prokaryotes in an unusual ecosystem isolated from the surface biosphere. Here we report the comprehensive genome and transcriptome of this organism, identifying a signature of adaptation: an expanded repertoire of 70 kilodalton heat-shock proteins (Hsp70) and avrRpt2 induced gene 1 (AIG1) proteins. The expanded Hsp70 genes are transcriptionally induced upon growth under heat stress, and we find that positive selection is detectable in several members of this family. We further show that AIG1 may have been acquired by horizontal gene transfer (HGT) from a rhizobial fungus. Over one-third of the genes of H. mephisto are novel, highlighting the divergence of this nematode from other sequenced organisms. This work sheds light on the genomic basis of heat tolerance in a complete subterrestrial eukaryotic genome.

Detectability of Biosignatures in Anoxic Atmospheres with the James Webb Space Telescope: A TRAPPIST-1e Case Study

Abstract The James Webb Space Telescope (JWST) may be capable of finding biogenic gases in the atmospheres of habitable exoplanets around low-mass stars. Considerable attention has been given to the detectability of biogenic oxygen, which could be found using an ozone proxy, but ozone detection with JWST will be extremely challenging, even for the most favorable targets. Here, we investigate the detectability of biosignatures in anoxic atmospheres analogous to those that likely existed on the early Earth. Arguably, such anoxic biosignatures could be more prevalent than oxygen biosignatures if life exists elsewhere. Specifically, we simulate JWST retrievals of TRAPPIST-1e to determine whether the methane plus carbon dioxide disequilibrium biosignature pair is detectable in transit transmission. We find that ∼10 transits using the Near InfraRed Spectrograph prism instrument may be sufficient to detect carbon dioxide and constrain methane abundances sufficiently well to rule out known, nonbiological CH4 production scenarios to ∼90% confidence. Furthermore, it might be possible to put an upper limit on carbon monoxide abundances that would help rule out nonbiological methane-production scenarios, assuming the surface biosphere would efficiently draw down atmospheric CO. Our results are relatively insensitive to high-altitude clouds and instrument noise floor assumptions, although stellar heterogeneity and variability may present challenges.

The deep history of Earth's biomass

The subsurface ‘deep biosphere’ represents one-tenth to one-third of Earth's total global present-day biomass. The rest is dominated by land plants, a relatively recent development in geological history. Before c. 400 Ma, a relatively low surface biomass with high productivity and fast turnover supplied carbon to a deep biosphere with high biomass but low productivity and slow turnover. Here, we argue that the deep biosphere outweighed the surface biosphere by about one order of magnitude for at least half of the history of life on Earth. This result offers a new perspective on the history of life on Earth with important implications for the search for life on other worlds.

Effects of high spatial and temporal resolution Earth observations on simulated hydrometeorological variables in a cropland (southwestern France)

Abstract. Agricultural landscapes are often constituted by a patchwork of crop fields whose seasonal evolution is dependent on specific crop rotation patterns and phenologies. This temporal and spatial heterogeneity affects surface hydrometeorological processes and must be taken into account in simulations of land surface and distributed hydrological models. The Sentinel-2 mission allows for the monitoring of land cover and vegetation dynamics at unprecedented spatial resolutions and revisit frequencies (20 m and 5 days, respectively) that are fully compatible with such heterogeneous agricultural landscapes. Here, we evaluate the impact of Sentinel-2-like remote sensing data on the simulation of surface water and energy fluxes via the Interactions between the Surface Biosphere Atmosphere (ISBA) land surface model included in the EXternalized SURface (SURFEX) modeling platform. The study focuses on the effect of the leaf area index (LAI) spatial and temporal variability on these fluxes. We compare the use of the LAI climatology from ECOCLIMAP-II, used by default in SURFEX-ISBA, and time series of LAI derived from the high-resolution Formosat-2 satellite data (8 m). The study area is an agricultural zone in southwestern France covering 576 km2 (24 km × 24 km). An innovative plot-scale approach is used, in which each computational unit has a homogeneous vegetation type. Evaluation of the simulations quality is done by comparing model outputs with in situ eddy covariance measurements of latent heat flux (LE). Our results show that the use of LAI derived from high-resolution remote sensing significantly improves simulated evapotranspiration with respect to ECOCLIMAP-II, especially when the surface is covered with summer crops. The comparison with in situ measurements shows an improvement of roughly 0.3 in the correlation coefficient and a decrease of around 30 % of the root mean square error (RMSE) in the simulated evapotranspiration. This finding is attributable to a better description of LAI evolution processes with Formosat-2 data, which further modify soil water content and drainage of soil reservoirs. Effects on annual drainage patterns remain small but significant, i.e., an increase roughly equivalent to 4 % of annual precipitation levels with simulations using Formosat-2 data in comparison to the reference simulation values. This study illustrates the potential for the Sentinel-2 mission to better represent effects of crop management on water budgeting for large, anthropized river basins.

Seasonal changes in TC and WSOC and their 13C isotope ratios in Northeast Asian aerosols: land surface–biosphere–atmosphere interactions

In order to understand the relative importance of anthropogenic and biological sources of carbonaceous aerosols in Northeast Asia, we measured total carbon (TC) and water-soluble organic carbon (WSOC) and their stable carbon isotope ratios (δ13C) in total suspended particulates collected from Sapporo, northern Japan (43.07°N, 141.36°E) over a 1-year period (during 2 September 2009 and 5 October 2010). Temporal variations of TC showed a gradual decrease from mid-autumn to winter followed by a gradual increase to growing season with a peak in early summer. Both δ13CTC and δ13CWSOC showed very similar temporal trends with a gradual enrichment of 13C from mid-autumn to winter followed by a depletion in the 13C to early summer and thereafter it remained stable, except for few cases. Based on the results obtained together with the air mass trajectories, we found that biogenic emissions including biological particles (e.g., pollen) and secondary organic aerosol formation from biogenic volatile organic compounds are the important sources of carbonaceous aerosols in spring/summer whereas fungal spores from soil and biomass burning and enhanced fossil fuel combustion contribute significantly in autumn/winter and in winter, respectively, in Northeast Asia.

Deep microbial life in high‐quality granitic groundwater from geochemically and geographically distinct underground boreholes

Deep granitic aquifer is one of the largest, but least understood, microbial habitats. To avoid contamination from the surface biosphere, underground drilling was conducted for 300 m deep granitic rocks at the Mizunami underground research laboratory (URL), Japan. Slightly alkaline groundwater was characterized by low concentrations of dissolved organic matter and sulfate and the presence of > 100 nM H2 . The initial biomass was the highest (∼10(5) cells ml(-1) ) with the dominance of Hydrogenophaga spp., whereas the phylum Nitrospirae became predominant after 3 years with decreasing biomass (∼10(4) cells ml(-1) ). One week incubation of groundwater microbes after 3 years with (13) C-labelled bicarbonate and 1% H2 and subsequent single-cell imaging with nanometer-scale secondary ion mass spectrometry demonstrated that microbial cells were metabolically active. Pyrosequencing of microbial communities in groundwater retrieved at 3-4 years after drilling at the Mizunami URL and at 14 and 25 years after the drilling at the Grimsel Test Site, Switzerland, revealed the occurrence of common Nitrospirae lineages at the geographically distinct sites. As the close relatives of the Nitrospirae lineages were exclusively detected from deep groundwaters and terrestrial hot springs, it suggests that these bacteria are indigenous and potentially adapted to the deep terrestrial subsurface.

Toward Linking Aboveground Vegetation Properties and Soil Microbial Communities Using Remote Sensing

Despite their vital role in terrestrial ecosystem function, the distributions and dynamics of soil microbial communities (SMCs) are poorly understood. Vegetation and soil properties are the primary factors that influence SMCs. This paper discusses the potential effectiveness of remote sensing science and technologies for mapping SMC biogeography by characterizing surface biophysical properties (e.g., plant traits and community composition) strongly correlated with SMCs. Using remotely sensed biophysical properties to predict SMC distributions is extremely challenging because of the intricate interactions between biotic and abiotic factors and between above- and below-ground ecosystems. However, the integration of biophysical and soil remote sensing with geospatial information about the environment holds great promise for mapping SMC biogeography. Additional research needs involve microbial taxonomic definition, soil environmental complexity, and scaling strategies. The collaborative effort of experts from diverse disciplines is essential to linking terrestrial surface biosphere observations with subsurface microbial community distributions using remote sensing.

ECOCLIMAP-II/Europe: a twofold database of ecosystems and surface parameters at 1 km resolution based on satellite information for use in land surface, meteorological and climate models

Abstract. The overall objective of the present study is to introduce the new ECOCLIMAP-II database for Europe, which is an upgrade for this region of the former initiative, ECOCLIMAP-I, already implemented at global scale. The ECOCLIMAP programme is a dual database at 1 km resolution that includes an ecosystem classification and a coherent set of land surface parameters that are primarily mandatory in meteorological modelling (notably leaf area index and albedo). Hence, the aim of this innovative physiography is to enhance the quality of initialisation and impose some surface attributes within the scope of weather forecasting and climate related studies. The strategy for implementing ECOCLIMAP-II is to depart from prevalent land cover products such as CLC2000 (Corine Land Cover) and GLC2000 (Global Land Cover) by splitting existing classes into new classes that possess a better regional character by virtue of the climatic environment (latitude, proximity to the sea, topography). The leaf area index (LAI) from MODIS and normalized difference vegetation index (NDVI) from SPOT/Vegetation (a global monitoring system of vegetation) yield the two proxy variables that were considered here in order to perform a multi-year trimmed analysis between 1999 and 2005 using the K-means method. Further, meteorological applications require each land cover type to appear as a partition of fractions of 4 main surface types or tiles (nature, water bodies, sea, urban areas) and, inside the nature tile, fractions of 12 plant functional types (PFTs) representing generic vegetation types – principally broadleaf forest, needleleaf forest, C3 and C4 crops, grassland and bare land – as incorporated by the SVAT model ISBA (Interactions Surface Biosphere Atmosphere) developed at Météo France. This landscape division also forms the cornerstone of a validation exercise. The new ECOCLIMAP-II can be verified with auxiliary land cover products at very fine and coarse resolutions by means of versatile land occupation nomenclatures.

Bacterial Communities Associated with Subsurface Geochemical Processes in Continental Serpentinite Springs

Reactions associated with the geochemical process of serpentinization can generate copious quantities of hydrogen and low-molecular-weight organic carbon compounds, which may provide energy and nutrients to sustain subsurface microbial communities independently of the photosynthetically supported surface biosphere. Previous microbial ecology studies have tested this hypothesis in deep sea hydrothermal vents, such as the Lost City hydrothermal field. This study applied similar methods, including molecular fingerprinting and tag sequencing of the 16S rRNA gene, to ultrabasic continental springs emanating from serpentinizing ultramafic rocks. These molecular surveys were linked with geochemical measurements of the fluids in an interdisciplinary approach designed to distinguish potential subsurface organisms from those derived from surface habitats. The betaproteobacterial genus Hydrogenophaga was identified as a likely inhabitant of transition zones where hydrogen-enriched subsurface fluids mix with oxygenated surface water. The Firmicutes genus Erysipelothrix was most strongly correlated with geochemical factors indicative of subsurface fluids and was identified as the most likely inhabitant of a serpentinization-powered subsurface biosphere. Both of these taxa have been identified in multiple hydrogen-enriched subsurface habitats worldwide, and the results of this study contribute to an emerging biogeographic pattern in which Betaproteobacteria occur in near-surface mixing zones and Firmicutes are present in deeper, anoxic subsurface habitats.

Exploring the deep biosphere

Over the past two decades, scientific drilling into sediments and rocks in the ocean and the continent has revealed the presence of physiologically and phylogenetically complex microbial life in the deep subsurface. Microorganisms, most of which have no cultured or known relatives in the surface biosphere, have been discovered in sediments and rock at depth as deep as 1 km below the seafloor and more than 3 km deep in the continent. The deep biosphere probably represents the most voluminous part of the global biosphere and may constitute as much as 50% of the Earth’s biomass. In this article, we review the current knowledge of and most recent advances in studying the deep biosphere and suggest directions in future research.