Privacy by Design (PbD) is a well-known concept that aims to provide a high level of protection for privacy throughout the entire life cycle of systems development. Despite the considerable attention from stakeholders such as researchers, government agencies, and system suppliers, the widespread adoption of PbD faces obstacles due to a lack of knowledge, insufficient awareness of PbD benefits, and the absence of specific implementation guidelines. In this study, stakeholders are identified primarily as diverse participants from government agencies and system suppliers engaged in National Identification Systems (NIDS). Specifically, government agencies representing regulatory bodies and administrators of NIDS, setting the legal framework that governs the NIDS’s privacy aspects. The NIDS system suppliers includes private companies playing a crucial role in the development and implementation of NIDS with a focus on privacy considerations. Through the perspectives of NIDS stakeholders, this study aimed to examine the Knowledge, Attitudes and Practices (KAP) of PbD principles and its integration in NIDS. A survey involving 203 participants from government agencies and NIDS system suppliers engaged in NIDS development was conducted. Subsequently, a focus group discussion was held with 11 members to provide qualitative insights into the KAP of PbD. The survey results revealed a significant correlation between attitudes and practices but a weak correlation between knowledge and attitudes or practices. The focus group discussion assured these findings, emphasizing the role of positive attitudes in facilitating PbD practices and highlighting knowledge-practice gaps. In conclusion, this study offers tailored recommendations for improving the integration of PbD in NIDS development. The recommendations includes strategies such as developing training programs, establishing clear guidelines and standards and creating awareness campaigns.