Sulfur-oxidizing Bacteria Research Articles

Sulphur oxidizing bacteria to boost up mustard (Brassica juncea l.) growth and biomass yield

The study aimed to find out the most efficient sulphur oxidizing bacteria (SOB), isolation was attempted from soil, water and biogas slurry samples of AAU, Anand and main rice research station, Nawagam, wherein total 25 isolates were obtained on thiosulphate agar. Further, three most efficient isolates; SOB1, SOB2 and SOB3 were selected on the basis of lowering pH from 8 to 5 in thiosulphate broth and sulphate production (1.13 to 1.76 mM) ability. They were culturally and morphologically characterized. The 3 strains; SOB1, SOB2 and SOB3 were identified as Bacillus tropicus AAUSOB1 (ACCN ON127698), Beijerinckia fluminensis AAUSOB2 (ACCN ON127700) and Klebsiella variicola AAUSOB3 (ACCN ON127847), respectively. All the three cultures were mutually compatible with each other in cross streak assay and a consortium was prepared combining each culture in equal proportion. Inoculation of SOB alone and/or their consortium @ 5 ml kg-1 seed, in presence of either elemental or bentonite sulphur @ 20 kg ha-1 , increased plant growth and biomass yield of mustard as compared to their respective controls.

Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora

Heterotrophic activity, primarily driven by sulfate-reducing prokaryotes, has traditionally been linked to nitrogen fixation in the root zone of coastal marine plants, leaving the role of chemolithoautotrophy in this process unexplored. Here, we show that sulfur oxidation coupled to nitrogen fixation is a previously overlooked process providing nitrogen to coastal marine macrophytes. In this study, we recovered 239 metagenome-assembled genomes from a salt marsh dominated by the foundation plant Spartina alterniflora, including diazotrophic sulfate-reducing and sulfur-oxidizing bacteria. Abundant sulfur-oxidizing bacteria encode and highly express genes for carbon fixation (RuBisCO), nitrogen fixation (nifHDK) and sulfur oxidation (oxidative-dsrAB), especially in roots stressed by sulfidic and reduced sediment conditions. Stressed roots exhibited the highest rates of nitrogen fixation and expression level of sulfur oxidation and sulfate reduction genes. Close relatives of marine symbionts from the Candidatus Thiodiazotropha genus contributed ~30% and ~20% of all sulfur-oxidizing dsrA and nitrogen-fixing nifK transcripts in stressed roots, respectively. Based on these findings, we propose that the symbiosis between S. alterniflora and sulfur-oxidizing bacteria is key to ecosystem functioning of coastal salt marshes.

Geopolymers functionalised by antibacterial zeolite against biocorrosion

Aluminosilicate geopolymer with remarkable chemical and biological resistance is a promising material solution to the persistent challenge of microbial induced concrete corrosion (MICC) in sewers. In this work, novel Sor-zeolite, assembled by using microporous 13X zeolite as a host of antimicrobial ion sorbate, is incorporated into fly ash-slag geopolymer to form bio-resistant materials with long-lasting efficacy and densified microstructure. The inclusion of pure zeolite and Sor-zeolite increase the strength and refine the pore structure of geopolymer pastes owing to the seeding nuclei effects during the geopolymerisation process. The enhanced dissolution of FA and slag by the seeding effects of pure zeolite and Sor-zeolite, accelerates and enriches the precipitation of geopolymeric gels, mainly a mixture of K-A-S-H and C-A-S-H (abbreviated as K-(C)-A-S-H). The Sor-zeolite-functionalised geopolymer possesses outstanding antibacterial properties against sulphur oxidising bacteria Acidithiobacillus thiooxidans, inhibiting biofilm formation on the surface and reducing corrosion depth. The main biodegradation products of geopolymers are gypsum and silica-rich gels, resulted from decalcification and dealumination of Si–O–Al and Ca–O bonds in K-(C)-A-S-H.

H2S-laden biogas triggers sulfur amino acids production in microbial protein synthesized during mixed culture fermentation by methane and sulfur oxidizing bacteria

Biogas can be converted into high-value bioproducts through fermentation processes. This study proposes a conversion platform where sulfide-rich biogas is utilized as the substrate for the growth of a mixed culture of methane- and sulfur-oxidizing bacteria for the production of high-value and protein-rich microbial biomass. The role of several process variables such as biomethane vs biogas, synthetic vs real biogas, biogas composition and H2S concentration during the fermentation process performed in bubble column reactors was evaluated in terms of biomass growth, yield and volumetric productivity, protein content and amino acids profile as well as microbial community composition and evolution. Despite the presence of 1500 ppm of equivalent H2S in the synthetic biomethane or biogas (CH4:CO2 ratio of 70:30), good performances in terms of biomass growth (559.9 ± 13.3–677.8 ± 46.8 mg of volatile suspended solids (VSS) per liter), biomass yield (0.042 ± 0.004–0.050 ± 0.08 mg VSS per mg of CH4-equivalent chemical oxygen demand (CH4-COD)) as well as protein content (51.9 ± 3.6% − 59.2 ± 3.6% g protein/g VSS) were achieved. The presence of increasing sulfide concentrations until 4000 ppm of equivalent H2S was well tolerated by the mixed culture and increased the production of valuable S-amino acids, i.e., cysteine and methionine (61.3 mg/g biomass and 58.3 mg/g biomass, respectively), which was up to 2.50 and 2.57 times higher than in the absence of sulfide, respectively.

Exogenous additive ferric sulfate regulates sulfur-oxidizing bacteria in cow manure composting to promote carbon fixation.

Enhancing carbon fixation in the composting process was of great significance in the era of massive generation of organic solid waste. In this study, the experimental results showed that the contents of dissolved organic matter (DOM) in the experimental group (CT) were 37.58% higher than those in the control group (CK). The CO2 emission peaked on day 5, and the value of CK was 1.34 times that of CT. Significant differences were observed between the contents of sulfur fractions in CT and CK. This phenomenon may be due to the suppression of sulfur-reducing gene expression in CT. On day 51 of composting, the abundance of sulfur-oxidizing bacteria (SOB) Rhodobacter (5.33%), Rhodovulum (14.76%), and Thioclava (23.83%) in CT was higher than that in CK. In summary, the composting fermentation regulated by Fe2(SO4)3 increased the sulfate content, enhanced the expression of sulfur-oxidizing genes and SOB, and ultimately promoted carbon sequestration during composting.

Lipoic acid attachment to proteins: stimulating new developments.

SUMMARYLipoic acid-modified proteins are essential for central metabolism and pathogenesis. In recent years, the Escherichia coli and Bacillus subtilis lipoyl assembly pathways have been modified and extended to archaea and diverse eukaryotes including humans. These extensions include a new pathway to insert the key sulfur atoms of lipoate, several new pathways of lipoate salvage, and a novel use of lipoic acid in sulfur-oxidizing bacteria. Other advances are the modification of E. coli LplA for studies of protein localization and protein-protein interactions in cell biology and in enzymatic removal of lipoate from lipoyl proteins. Finally, scenarios have been put forth for the evolution of lipoate assembly in archaea.

Physicochemical Variation of Water, Diversity, and Bacterial Community Structure in Post-coal Mining Ponds of Different Ages in Samarinda, East Kalimantan, Indonesia

<p>This study aims to determine physicochemical variation of water, diversity, and community structure of bacteria at post-coal mining ponds of various ages located in Samarinda, East Kalimantan, Indonesia. Bacteria species were identified using a metagenomic approach on the Next-Generation Sequencing (NGS) nanopore platform and analyzed using the QIIME2 pipeline. The result showed that ponds aged > 20 years old had better water quality compared to others < 5 years old. In addition, ponds > 20 years old had lower conductivity values (0,21-0,40 mS/cm), water temperature (29,1-30,1oC), and sulfur content (2,35-6,44 mg/L), as well as higher pH (6,57-7,61) and abundance of sulfur-oxidizing bacteria (SOB) (217-364 CFU/mL). Based on the results, ponds < 5 years old had water quality characterized by higher conductivity (0,27-1,29 mS/cm), water temperature (30,1-31,4 oC), and sulfur content (6,56-15,03 mg/L), lower pH (2,93-3,72), and abundance of SOB (0-38 CFU/mL). Diversity and structure of bacteria community showed that the Operational Taxonomic Unit (OTU) in post-coal mining ponds > 20 years old was 3819 compared to 2027 in those < 5 years old. Bacteria community in post-coal mining ponds > 20 years old consisted of 11 phyla and 45 classes, while those < 5 years old had 9 phyla and 38 classes. Moreover, the relative abundance of families, genera, and species at ponds > 20 years old was also higher. The high water quality, diversity, and community structure of bacteria at ponds > 20 years old showed the successful remediation of ponds water by SOB.</p>

Biogenic sulfur recovery from sulfate-laden antibiotic production wastewater using a single-chamber up-flow bioelectrochemical reactor

The high-concentration sulfate (SO42−) in the antibiotic production wastewater hinders the anerobic methanogenic process and also proposes possible environmental risk. In this study, a novel single-chamber up-flow anaerobic bioelectrochemical reactor (UBER) was designed to realize simultaneous SO42− removal and elemental sulfur (S0) recovery. With the carbon felt, the cathode was installed underneath and the anode above to meet the different biological niches for sulfate reducing bacteria (SRB) and sulfur oxidizing bacteria (SOB). The bio-anode UBER (B-UBER) demonstrated a much higher average SO42− removal rate (SRR) of 113.2 ± 5.7 mg SO42−−S L−1 d−1 coupled with a S0 production rate (SPR) of 54.4 ± 5.8 mg S0-S L−1 d−1 at the optimal voltage of 0.8 V than that in the abio-anode UBER (control reactor) (SRR = 86.6 ± 13.4 mg SO42−−S L−1 d−1; SPR = 25.5 ± 9.7 mg S0-S L−1 d−1) under long-term operation. A large amount of biogenic S0 (about 72.2 mg g−1 VSS) was recovered in the B-UBER. The bio-anode, dominated by Thiovirga (SOB genus) and Acinetobacter (electrochemically active bacteria genus), exhibited a higher current density, lower overpotential, and lower internal resistance. C-type cytochromes mainly served as the crucial electron transfer mediator for both direct and indirect electron transfer, so that significantly increasing electron transfer capacity and biogenic S0 recovery. The reaction pathways of the sulfur transformation in the B-UBER were hypothesized that SRB utilized acetate as the main electron donor for SO42− reduction in the cathode zone and SOB transferred electrons to the anode or oxygen to produce biogenic S0 in the anode zone. This study proved a new pathway for biogenic S0 recovery and sulfate removal from sulfate-laden antibiotic production wastewater using a well-designed single-chamber bioelectrochemical reactor.

Enhancement of bio-promoters on hexavalent chromium inhibited sulfur-driven denitrification: repairing damage, accelerating electron transfer, and reshaping microbial collaboration

Proposing recovery strategies to recover heavy-metal-inhibited sulfur-driven denitrification, as well as disclosing recovery mechanisms, can provide technical support for the stable operation of bio-systems. This study proposed an effective bio-promoter (mediator-promoter composed of L-cysteine, biotin, cytokinin, and anthraquinone-2,6-disulfonate) to recover Cr(VI) inhibited sulfur-driven denitrification, which effectively reduced the recovery time of NO3–-N reduction (18–21 cycles) and NO2–-N reduction (27–42 cycles) compared with self-recovery. The mediator-promoter repaired microbial damage by promoting intracellular chromium efflux. Moreover, the mediator-promoter reduced the accumulated reactive oxygen species by stimulating the secretion of antioxidant enzymes, reaching equilibrium in the oxidative-antioxidant system. To improve electron transmission, the mediator-promoter restored S2O32- oxidation to provide adequate electron donors and increased electron transfer rate by increasing cytochrome c levels. Mediator-promoter boosted the abundance of Thiobacillus (sulfur-oxidizing bacterium) and Simplicispira (denitrifying bacterium), which were positively correlated, facilitating the rapid denitrification recovery and the long-term stable operation of recovered systems.

Nitrate and oxygen significantly changed the abundance rather than structure of sulphate-reducing and sulphur-oxidising bacteria in water retrieved from petroleum reservoirs.

Sulphate-reducing bacteria (SRB) are the main culprits of microbiologically influenced corrosion in water-flooding petroleum reservoirs, but some sulphur-oxidising bacteria (SOB) are stimulated when nitrate and oxygen are injected, which control the growth of SRB. This study aimed to determine the distributions of SRB and SOB communities in injection-production systems and to analyse the responses of these bacteria to different treatments involving nitrate and oxygen. Desulfovibrio, Desulfobacca, Desulfobulbus, Sulfuricurvum and Dechloromonas were commonly detected via 16S rRNA gene sequencing. Still, no significant differences were observed for either the SRB or SOB communities between injection and production wells. Three groups of water samples collected from different sampling sites were incubated. Statistical analysis of functional gene (dsrB and soxB) clone libraries and quantitative polymerase chain reaction showed that the SOB community structures were more strongly affected by the nitrate and oxygen levels than SRB clustered according to the sampling site; moreover, both the SRB and SOB community abundances significantly changed. Additionally, the highest SRB inhibitory effect and the lowest dsrB/soxB ratio were obtained under high concentrations of nitrate and oxygen in the three groups, suggesting that the synergistic effect of nitrate and oxygen level was strong on the inhibition of SRB by potential SOB.

Soil microbial community in lead smelting area and the role of sulfur-oxidizing bacteria

Soil microbial community in lead smelting area and the role of sulfur-oxidizing bacteria

Anomalous Gold Concentrations in Hypersaline Wetland Sediments (Laguna Honda, South Spain) Caused by Nanoparticles Used in Agricultural Practices: Environmental Transformation.

Illite-rich sediments from the Laguna Honda wetland, an eutrophicated hypersaline wetland with waters enriched in Mg and Ca surrounded by olive groves in the Guadalquivir Basin River (South Spain), are polluted by elevated concentrations of gold (up to 21.9 ppm) due to agricultural practices. The highest gold contents appear in the shore sediments of the lake, where up to 20 µm homoaggregates of fused gold nanoparticles (AuNp) are found. Small nanoaggregates of up to six fused gold nanoparticles and very few isolated nanoparticles around 1 nm in size can also be observed to form heteroaggregates of AuNp-mica, especially in the deeper sediments in the central part of the wetland, where Au concentrations are lower (up to 1.89 ppm). The high nanoparticle concentration caused by the inappropriate application of pesticides favors nanoparticle collision in the wetland's Mg- and Ca-rich waters and the fast coagulation and deposition of Au homoaggregates in the gold-rich shore sediment of the lake. The interaction of gold nanoparticles with the abundant illite particles in the wetland's hypersaline waters promotes the simultaneous formation of low-density Au-illite heteroaggregates, which are transported and deposited in the less-rich-in-gold sediments of the central part of the lake. The small sizes of the isolated AuNp and AuNp-fused contacts of the aggregates suggest modifications in the original nanoparticles involving dissolution processes. The presence of bacterial communities resistant to heavy metal stress (Luteolibacter and Maricaulis), as well as the activity of sulfate-reducing bacteria (SRB) and particularly sulfur-oxidizing bacteria (SOB) communities from the shore sediments, favored the high-Eh and low-pH conditions adequate for the destabilization and transport of AuNp.

Unveiling microbial guilds and symbiotic relationships in Antarctic sponge microbiomes

Marine sponges host diverse microbial communities. Although we know many of its ecological patterns, a deeper understanding of the polar sponge holobiont is still needed. We combine high-throughput sequencing of ribosomal genes, including the largest taxonomic repertoire of Antarctic sponge species analyzed to date, functional metagenomics, and metagenome-assembled genomes (MAGs). Our findings show that sponges harbor more exclusive bacterial and archaeal communities than seawater, while microbial eukaryotes are mostly shared. Furthermore, bacteria in Antarctic sponge holobionts establish more cooperative interactions than in sponge holobionts from other environments. The bacterial classes that established more positive relations were Bacteroidia, Gamma- and Alphaproteobacteria. Antarctic sponge microbiomes contain microbial guilds that encompass ammonia-oxidizing archaea, ammonia-oxidizing bacteria, nitrite-oxidizing bacteria, and sulfur-oxidizing bacteria. The retrieved MAGs showed a high level of novelty and streamlining signals and belong to the most abundant members of the main microbial guilds in the Antarctic sponge holobiont. Moreover, the genomes of these symbiotic bacteria contain highly abundant functions related to their adaptation to the cold environment, vitamin production, and symbiotic lifestyle, helping the holobiont survive in this extreme environment.

Effect of supplementing Sulphur-oxidizing bacteria with different Sulphur sources on the growth and development of chickpea (Cicer arietinum)

Sulphur deficiency affects several nations, including India, and has become a limiting issue for food productivity and quality. Sulphur deficiency causes plants to shrink, build up yellow chlorosis in their younger leaves, necrosis in their last stages of growth, and become stiff with short, slender stalks. The aim of this study was to identify and characterize Sulphur-oxidizing bacteria (SOB) from the rhizosphere and evaluate their potential to enhance chickpea growth with the application of Sulphur fertilizer. Out of 18 isolates, five potential Sulphur oxidizing bacteria were identified using 16 s rDNA sequencing Viz., Enterobacter cloacae KDNC31 (AD31; OR083345.1), Klebsiella oxytoca KDNC1 (OR083341.1), Raoultella planticola KDNC3 (OR083342.1), Enterobacter cloacae KDNC9 (OR083344.1), and Klebsiella pasteurii KDNC8 (OR083343.1). A significant sulphate content (621.2 µg/ml) and sulphide oxidase activity (19.18 U/ml) were reported after the AD31 isolate was inoculated in thiosulphate broth, which caused a fast pH reduction to pH 4.0 within 3 days. The strain produced IAA (1600 µg/ml), ammonia (278.78 µg/ml), solubilized tricalcium phosphate (1800 µg/ml), and HCN, among other plant growth-promoting substances. The Sulphur oxidation potential of AD31 was assessed by supplementing it with elemental Sulphur and granular Sulphur in a pot. The results indicated that, When AD31 and elemental Sulphur were applied together, the length of the shoots, the length of the roots, the number of leaves and branches, and the fresh and dry weight of the shoots and roots were all significantly higher compared to the corresponding control. Elemental Sulphur has a smaller particle size and a larger surface area, making it more suitable for Sulphur oxidation by AD31 compare to granular Sulphur. Therefore, SOB inoculation with elemental Sulphur might be employed to increase chick pea growth-related indices.

S0-driven partial denitrification coupled with anammox (S0PDA) enables highly efficient autotrophic nitrogen removal from wastewater

This study proposed a novel strategy that integrates S0 particles (diameter: 2–3 mm) and granular sludge to establish S0-driven partial denitrification coupled with anammox (S0PDA) process for autotrophic nitrogen removal from NH4+- and NO3−-containing wastewaters. This process was evaluated using an up-flow anoxic sludge bed bioreactor, operating continuously for 240 days. The influent concentrations of NH4+ and NO3− were 29.9 ± 2.7 and 50.2 ± 2.7 mg-N/L, respectively. Throughout the operation, the hydraulic retention time was shortened from 4.0 h to 2.0 h, while the effluent concentrations of NH4+ and NO3− were maintained at a desirable level of 1.45–1.51 mg-N/L and 4.46–6.52 mg-N/L, respectively. Despite an autotrophic process, the nitrogen removal efficiency and rate reached up to 88.5 ± 2.0 % and 1.75 ± 0.07 kg-N/(m3·d), respectively, indicating the remarkable robustness of the S0PDA process. Autotrophic anammox and sulfur-oxidizing bacteria (Candidatus Brocadia and Thiobacillus) were the predominant bacterial genera involved in the S0PDA process. Candidatus Brocadia was primarily enriched in the granular sludge, with a relative abundance of 6.70 %. Thiobacillus occupied a unique niche on the S0 particles, with a relative abundance as high as 57.6 %, of which Thiobacillus thioparus with partial denitrification function (reducing NO3− to NO2− without further reduction to N2) accounted for 78.0 %. These findings challenge the stereotype of low efficiency in autotrophic nitrogen removal from wastewater, shedding fresh light on the applications of autotrophic processes.

Aragonite crystallization in a sulfate-rich hypersaline wetland under dry Mediterranean climate (Laguna Honda, eastern Guadalquivir basin, S Spain)

This research investigates the influence of water composition, the presence of seasonal algal mats, detrital inputs and the activity of microorganisms on the crystallization of aragonite in the sediments deposited in the hypersaline Laguna Honda wetland (S of Spain). The high alkaline and hypersaline waters (pH > 9.2 and C.E. > 70 mS/cm) of the wetland lake are rich in SO42− (>24,000 mg/l), Cl− (>21,000 mg/l), Na+ (>11,000 mg/l) Mg2+ (>8400 mg/l) and Ca2+ (>1000 mg/l), and are supersaturated for dolomite, calcite and aragonite. Sediments have lower pH values than column waters, oscillating from 8.54 in the low Eh (up to −80.9 mV) central deep sediments and 6.33 in the shallower higher Eh (around −13.6 mV) shore sediments. Erosion of the surrounding olive groves soils produced detrital silicates rich sediments with concretions of carbonate or sulfate. Aragonite (up to 19 %) and pyrite (up to 13 %) are mainly concentrated in the organic matter rich samples from the upper part of the sediment cores, whereas gypsum is preferably concentrated in low organic matter content samples. Mineral crusts containing a MgAl silicate phase, epsomite, halite and gypsum are precipitated on the floating algal mats covering the wetland waters. Floating algal mats deposit increased the organic matter content of the upper sediments which promoted the presence of fermentative microorganisms, sulfate-reducing bacteria (SRB) and sulfur-oxidizing bacteria (SOB) communities and variations of Eh that influence the authigenesis of carbonate and S-bearing minerals. Replacement of poorly crystalline MgSi phases infilling algal cells by aragonite was favored in the organic matter rich sediments with low Eh values and important SRB communities that promoted sulfate bioreduction processes to form pyrite. Aragonite precipitation was favored by the increase of carbonate and bicarbonate concentration produced by the SRB oxidation of organic matter, the CO2 degassing by high summer temperatures and the CO2 uptake by photosynthesis of the algal mats.

Sulfur-Oxidizing Bacteria Alleviate Salt and Cadmium Stress in Halophyte Tripolium pannonicum (Jacq.) Dobrocz.

The aim of this study was to investigate how introducing halophilic sulfur-oxidizing bacteria (SOB) Halothiobacillus halophilus to the growth substrate affects the physiological and biochemical responses of the halophyte Tripolium pannonicum (also known as sea aster or seashore aster) under salt and cadmium stress conditions. This study assessed the plant's response to these stressors and bacterial inoculation by analyzing various factors including the accumulation of elements such as sodium (Na), chloride (Cl), cadmium (Cd) and sulfur (S); growth parameters; levels of photosynthetic pigments, proline and phenolic compounds; the formation of malondialdehyde (MDA); and the plant's potential to scavenge 2,2-Diphenyl-1-picrylhydrazyl (DPPH). The results revealed that bacterial inoculation was effective in mitigating the deleterious effect of cadmium stress on some growth criteria. For instance, stem length was 2-hold higher, the growth tolerance index was 3-fold higher and there was a 20% increase in the content of photosynthetic pigments compared to non-inoculated plants. Furthermore, the SOB contributed to enhancing cadmium tolerance in Tripolium pannonicum by increasing the availability of sulfur in the plant's leaves, which led to the maintenance of an appropriate, about 2-fold-higher level of phenolic compounds (phenylpropanoids and flavonols), as well as chloride ions. The level of MDA decreased after bacterial application in all experimental variants except when both salt and cadmium stress were present. These findings provide novel insights into how halophytes respond to abiotic stress following inoculation of the growth medium with sulfur-oxidizing bacteria. The data suggest that inoculating the substrate with SOB has a beneficial effect on T. pannonicum's tolerance to cadmium stress.

Microbes of biotechnological importance in acidic saline lakes in the Yilgarn Craton, Western Australia.

Acidic salt lakes are environments that harbor an array of biologically challenging conditions. Through 16S rRNA, 18S rRNA, and ITS amplicon sequencing of eight such lakes across the Yilgarn Craton of Western Australia, we aim to understand the microbial ecology of these lakes with a focus on iron- and sulfur-oxidizing and reducing microorganisms that have theoretical application in biomining industries. In spite of the biological challenges to life in these lakes, the microbial communities were highly diverse. Redundancy analysis of soil samples revealed sulfur, ammonium, organic carbon, and potassium were significant diversities of the microbial community composition. The most abundant microbes with a hypothetical application in biomining include the genus 9 M32 of the Acidithiobacillus family, Alicyclobacillus and Acidiphilium, all of which are possible iron- and/or sulfur-oxidizing bacteria. It is evident through this study that these lakes harbor multiple organisms with potential in biomining industries that should be exploited and studied further.

Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland

Abstract. The Santa Barbara Basin naturally experiences transient deoxygenation due to its unique geological setting in the southern California Borderland and seasonal changes in ocean currents. Long-term measurements of the basin showed that anoxic events and subsequent nitrate exhaustion in the bottom waters have been occurring more frequently and lasting longer over the past decade. One characteristic of the Santa Barbara Basin is the seasonal development of extensive mats of benthic nitrate-reducing sulfur-oxidizing bacteria, which are found at the sediment–water interface when the basin's bottom waters reach anoxia but still provide some nitrate. To assess the mat's impact on the benthic and pelagic redox environment, we collected biogeochemical sediment and benthic flux data in November 2019, after anoxia developed in the deepest waters of the basin and dissolved nitrate was depleted (down to 9.9 µM). We found that the development of mats was associated with a shift from denitrification to dissimilatory nitrate reduction to ammonium. The zone of sulfate reduction appeared near the sediment–water interface in sediment hosting these ephemeral white mats. We found that an exhaustion of iron oxides in the surface sediment was an additional prerequisite for mat proliferation. Our research further suggests that cycles of deoxygenation and reoxygenation of the benthic environment result in extremely high benthic fluxes of dissolved iron from the basin's sediment. This work expands our understanding of nitrate-reducing sulfur-oxidizing mats and their role in sustaining and potentially expanding marine anoxia.

Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism

BackgroundBiofilms in sulfide-rich springs present intricate microbial communities that play pivotal roles in biogeochemical cycling. We studied chemoautotrophically based biofilms that host diverse CPR bacteria and grow in sulfide-rich springs to investigate microbial controls on biogeochemical cycling.ResultsSulfide springs biofilms were investigated using bulk geochemical analysis, genome-resolved metagenomics, and scanning transmission X-ray microscopy (STXM) at room temperature and 87 K. Chemolithotrophic sulfur-oxidizing bacteria, including Thiothrix and Beggiatoa, dominate the biofilms, which also contain CPR Gracilibacteria, Absconditabacteria, Saccharibacteria, Peregrinibacteria, Berkelbacteria, Microgenomates, and Parcubacteria. STXM imaging revealed ultra-small cells near the surfaces of filamentous bacteria that may be CPR bacterial episymbionts. STXM and NEXAFS spectroscopy at carbon K and sulfur L2,3 edges show that filamentous bacteria contain protein-encapsulated spherical elemental sulfur granules, indicating that they are sulfur oxidizers, likely Thiothrix. Berkelbacteria and Moranbacteria in the same biofilm sample are predicted to have a novel electron bifurcating group 3b [NiFe]-hydrogenase, putatively a sulfhydrogenase, potentially linked to sulfur metabolism via redox cofactors. This complex could potentially contribute to symbioses, for example, with sulfur-oxidizing bacteria such as Thiothrix that is based on cryptic sulfur cycling. One Doudnabacteria genome encodes adjacent sulfur dioxygenase and rhodanese genes that may convert thiosulfate to sulfite. We find similar conserved genomic architecture associated with CPR bacteria from other sulfur-rich subsurface ecosystems.ConclusionsOur combined metagenomic, geochemical, spectromicroscopic, and structural bioinformatics analyses of biofilms growing in sulfide-rich springs revealed consortia that contain CPR bacteria and sulfur-oxidizing Proteobacteria, including Thiothrix, and bacteria from a new family within Beggiatoales. We infer roles for CPR bacteria in sulfur and hydrogen cycling.8FE2mu4H1cxgQVBqjGxsC2Video