Abstract The MixAlco™ process biologically converts biomass to carboxylate salts that may be chemically converted to a wide variety of chemicals and fuels. This study looked at the viability of the following substrates: office paper, pineapple residue, Aloe vera rinds, wood molasses, sugar molasses, and glycerol. All agricultural substrates were initially tested to determine their carbohydrate and lignin content because lignin reduces substrate digestibility. Only pineapple residue had a high enough lignin content (18.3%) to necessitate pretreatment. Pineapple residue was treated with excess lime (300 g kg−1 Ca(OH)2 on dry biomass, t = 1 h) and then neutralized with CO2, which reduced the lignin content to 4.89%. All substrates were anaerobically fermented in batch culture with marine microorganisms for 24 days. The acid concentrations (g mixed acid L−1) were Aloe vera (25.5), office paper (24.0), glycerol (22.6), pineapple residue (17.2), wood molasses (19.4) and sugar molasses (18.9). The conversions (g volatile solids digested g−1 volatile solids fed) were Aloe vera (0.59), office paper (0.50), glycerol (0.62), pineapple residue (0.52), wood molasses (0.42) and sugar molasses (0.82). The selectivities (g acetic acid equivalents g−1 VS digested) were Aloe vera (0.64), office paper (0.62), glycerol (0.51), pineapple residue (0.39), wood molasses (0.61) and sugar molasses (0.33).