Successive Generations Research Articles

Generation of chicken-based IgY polyclonal antibodies against Dendroaspis polylepis and preclinical evaluation of envenomation-neutralizing efficacy vis-à-vis selected commercial antivenoms

The Black mamba, D. polylepis, is one of the many venomous snakes found in Kenya, and known to account for some snakebite incidents. The Kenyan Ministry of Health data reveals annual 15,000 snakebites occurrences. Also, 1 in 15 people in Kenya gets bitten by a snake, and tragically, 1 in 147 of these individuals die of snakebite yearly. Traditionally, antivenoms for treatment are produced from horse or sheep but have complicated and expensive production issues. Alternative production approaches, such as using IgY antibodies derived from chicken egg yolks, may overcome disadvantages with traditional antivenom manufacturing techniques. In this current study, D. polylepis specific IgY polyclonal antibodies were purified from the egg yolks of chickens immunized with D. polylepis venom. These antibodies were subsequently assessed for their in-vivo neutralizing capacity vis-à-vis commercial antivenoms, PANAF-Premium and VINS. The IgY antibodies were purified by ammonium sulfate precipitation and affinity-chromatography, with quality and specificity determined by SDS-PAGE and ELISA. The LD50 of D. polylepis was found to be 0.54 mg/kg in chicks, and 0.34 mg/kg in mice, respectively. Pool of extracted IgY yielded 2.8 mg/mL concentration. Purified IgY under non-reducing and reducing conditions on SDS-PAGE exhibited a single-protein band of about 183 kDa and two bands (67 kDa and 25 kDa), respectively. The minimum-edematogenic dose was 0.05 μg. Anti-D. polylepis IgY antibodies and two antivenoms demonstrated the capacity to neutralize the toxic activities of D. polylepis venom. This study confirms a successful IgY generation against Black mamba venom for the first time, and observed toxic effects of the venom as well as neutralizing capacity of antivenoms.

Synergistic effects of covalently coupled eosin-Y with Ben-graphitic carbon nitride framework for improved photocatalytic activity in solar light-driven Biginelli product generation and NADH regeneration.

Elevated global pollution level is the prime reason that contributes to the onset of various harmful health diseases. The products of Biginelli reaction are enormously used in the pharmaceutical industry as they have antiviral, antibacterial, and calcium channel modulation abilities. This work reports a novel eosin Y sensitized boron graphitic carbon nitride (EY-Ben-g-C3N4) as a photocatalyst that efficiently produced 3,4-dihydropyrimidine-2-(1H)-one by the Biginelli reaction of benzaldehyde, urea, and methyl acetoacetate. The photocatalyst EY-Ben-g-C3N4 showed a successful generation of 3,4-dihydropyrimidine-2-(1H)-one (Biginelli product) in good yield via photocatalysis which is an eco-friendly method and has facile operational process. In addition to the production of Biginelli products, the photocatalyst also showed a remarkable NADH regeneration of 81.18%. The incorporation of g-C3N4 with boron helps increase the surface area and the incorporation of eosin Y which is an inexpensive and non-toxic dye, and in Ben-g-C3N4, enhanced the light-harvesting capacity of the photocatalyst. The production of 3,4-dihydropyrimidine-2-(1H)-one and NADH by the EY-Ben-g-C3N4 photocatalyst is attributed to the requisite band gap, high molar absorbance, low rate of charge recombination, and increased capacity of the photocatalyst to harvest solar light energy.

Clinical Presentation and WES Analysis of a Large Iranian Pedigree in Five Successive Generation Affected to Sever Multiple Synostosis 2 (SYNS2, Farhud Type)

Background: Bone Morphogenetic Proteins and the related Growth and Differentiation Factors (GDFs) are much conserved signaling proteins. GDF5 is pivotal for skeletal development. Several skeletal dysplasia and malformation syndromes are known as a result of mutations in GDF5. Multiple Synostosis Syndrome2 (SYNS2) is characterized by tarsal-carpal coalition, humeroradial synostosis, brachydactyly, and proximal symphalangism. In this study, we analyzed a large Iranian pedigree affected with a new type of SYNS2 (Farhud Type) in five successive generations. Methods: In this family-based study (1982-2022), Genetic linkage analysis of the pedigree (58affected, 62healthy) excluded the locus on chromosome 17q21-q22 in our previous study. Thus, we focused on 20q11.22 locus and GDF5 gene. Genetic investigations were performed on 16 patients with SYNS2 and 40 healthy individuals. Results: Whole-exome-sequencing results identified a heterozygote missense mutation in exon2 of GDF5 (NG_008076.1:g.9239G>A, NM_000557.2:c.1424G>A, S475N, rs121909347). This mutation was found in all patients but not in the unaffected individuals. This missense mutation is notable because S475 is strictly conserved among different species, and it is located in a highly conserved and active mature domain of GDF5 (phyloP100way=7.64). The corresponding defect in GDF5 may have unknown interaction with normal active 3rd and 4th structure of the product. Further bioinformatics study (amino acid multiple alignments) showed that the S475 is a much-conserved residue in many different species. Conclusion: These results introduce a new role of GDF5 in pathogenesis of a SYNS2 (Farhud Type), considered in genetic counseling, prenatal diagnosis, and as a potential target for molecular therapy, if possible.

Overriding Mendelian inheritance in Arabidopsis with a CRISPR toxin-antidote gene drive that impairs pollen germination.

Synthetic gene drives, inspired by natural selfish genetic elements and transmitted to progeny at super-Mendelian (>50%) frequencies, present transformative potential for disseminating traits that benefit humans throughout wild populations, even facing potential fitness costs. Here we constructed a gene drive system in plants called CRISPR-Assisted Inheritance utilizing NPG1 (CAIN), which uses a toxin-antidote mechanism in the male germline to override Mendelian inheritance. Specifically, a guide RNA-Cas9 cassette targets the essential No Pollen Germination 1 (NPG1) gene, serving as the toxin to block pollen germination. A recoded, CRISPR-resistant copy of NPG1 serves as the antidote, providing rescue only in pollen cells that carry the drive. To limit potential consequences of inadvertent release, we used self-pollinating Arabidopsis thaliana as a model. The drive demonstrated a robust 88-99% transmission rate over two successive generations, producing minimal resistance alleles that are unlikely to inhibit drive spread. Our study provides a strong basis for rapid genetic modification or suppression of outcrossing plant populations.

The Origins of Armenian Lobbying in the United States: A Geopolitical Conceptualization of Restorative Justice

This paper focuses on the origins of Armenian lobbying the U.S. government for favourable policies toward the Armenian cause in the homeland — that is, Ottoman Armenia and the Republic of Armenia (1918-1921). Vahan Cardashian, a New York lawyer, organized a lobbying campaign during and after the Young Turk genocide against the Armenian people in the Ottoman Empire (1915–1923). He and his associates formulated a geopolitical conceptualization of restorative justice. While Cardashian’s lobbying campaign eventually failed to exert the desired influence on U.S. policy during the Wilson administration, his strategy nevertheless established the foundations for Armenian lobbying in the United States for successive generations. This article seeks to contribute to the literature on ethnicity and ethnic lobbying a host state — in this case the United States — diasporan community and politics, and restorative justice.

Two-stage many-objective evolutionary algorithm: enhanced dominance relations and control mechanisms for separated balance

Although the multiobjective evolutionary algorithms (MOEAs) have been proved to bring promising prospects for solving multiobjective optimization problems (MOPs), the performance of the algorithm deteriorates sharply in high-dimensional objective space due to the weak selection pressure and the unregulated balance, which is caused by the increase of objective space dimension. Some current MOEAs with two-stage strategy (TS) strive to address above issues by dividing the evolutionary process into two independent stages, in which convergence and diversity are handled separately within successive generations of different stages. However, TS-MOEAs have some weaknesses, such as sensitivity to stage division, and incomplete separation of convergence and diversity. In this paper, TS/KW-MaOEA is proposed for solving many-objective optimization problems (MaOPs), which keeps TS as the central and equips a perfect control mechanism for separated balance. More specifically, TS/KW-MaOEA can automatically adjust the balance trend and provide appropriate selection pressure for MaOPs according to the Kondratiev wave (KW) search model and the objective space dimension. To verify the effectiveness of the proposed algorithm, a series of experiments are carried out against seven state-of-the-art many-objective optimization algorithms on 15 benchmark problems with up to 30 objectives. Experimental results indicate that the proposed algorithm is highly competitive against peer competitors.

A U-Net-based self-stitching method for generating periodic grain structures

When modeling microstructures, the computational resource requirements increase rapidly as the simulation domain becomes larger. As a result, simulating a small representative fraction under periodic boundary conditions is often a necessary simplification. However, the truncated structures leave nonphysical boundaries, which are detrimental to numerical modeling. Here, we propose a self-stitching algorithm for generating periodic structures, demonstrated in a grain structure. The main idea of our algorithm is to artificially add structural information between mismatched boundary pairs, using the hierarchical spatial predictions of the U-Net. The model is trained with 20,000 grain sample pairs simulated from multiphase field simulations, resulting in the successful generation of periodic grain structures as expected. Furthermore, we employ an energy-based metric, the local curvature, to highlight the quality of the generated samples. Through this metric, we determine that the optimum value of the width of the mask is 1/16 of the sample width. The algorithm provides an automatic and unbiased way to obtain periodic boundaries in grain structures and can be applied to porous microstructures in a similar way.

A matter of time, not generations: rising emotional attachment to the European Union 1991–2023. An age period cohort analysis

ABSTRACT The literature argues that successive generations have become progressively more attached to the EU, due to having experienced increasing levels of integration during their impressionable adolescent years. This generational view of EU attachment assumes that after birth cohorts have outgrown their impressionable years, they do not become more attached to the EU, regardless of period-based changes. However, newer theories of European integration emphasise period-based influences that shape EU attachment across all age cohorts, rather than solely impacting adolescents during their formative years. We use an age period cohort model with repeated cross-sectional Eurobarometer data from 1991 to 2023, showing that all EU-citizens have on average become more attached to the EU over time, rather than later-born birth cohorts being more attached to the EU based on their generational membership. Contrary to what the literature assumes, this indicates that no ‘generations of Europeans’ exist, but that EU-attachment increases for all cohorts over time. Contrary to long-standing assumptions in the literature, this indicates that efforts to increase emotional attachment to the EU can proceed faster than generational change occurs.

Generation of mouse and rat xenogeneic ovaries in vitro for production of mouse oocyte

ABSTRACT The system forming ovarian follicles is developed to investigate in vitro folliculogenesis in a confined environment to obtain functional oocytes. Several studies have reported the successful generation of fully functional oocytes using mouse-induced pluripotent stem cells (iPSCs) and mouse female germline stem cells (fGSCs) as sources of stem cells for in vitro gametogenesis models. In addition, human oogonia have been generated through heterologous co-culture of differentiated human primordial germ cell-like cells (hPGCLCs) with mouse germline somatic cells, although oocyte formation remains challenging. Thus, studies on in vitro ovarian formation in other species are utilized as an introductory approach for in vitro mammalian gametogenesis by understanding the differences in culture systems between species and underlying mechanisms. In this study, we optimized the method of the entire oogenesis process from rat embryonic gonads. We identified well-maturated MII oocytes from rat gonads using our constructed method. Moreover, we generated the first successful in vitro reconstitution of xenogeneic follicles from mouse primordial germ cells (PGCs) and rat somatic cells. We also established an appropriate culture medium and incubation period for xenogeneic follicles. This method will be helpful in studies of xenogeneic follicular development and oocyte generation.

Cancer Incidence Trends in Successive Social Generations in the US

The incidence of some cancers in the US is increasing in younger age groups, but underlying trends in cancer patterns by birth year remain unclear. To estimate cancer incidence trends in successive social generations. In this cohort study, incident invasive cancers were ascertained from the Surveillance, Epidemiology, and End Results (SEER) program's 13-registry database (November 2020 submission, accessed August 14, 2023). Invasive cancers diagnosed at ages 35 to 84 years during 1992 to 2018 within 152 strata were defined by cancer site, sex, and race and ethnicity. Invasive cancer. Stratum-specific semiparametric age-period-cohort (SAGE) models were fitted and incidence per 100 000 person-years at the reference age of 60 years was calculated for single-year birth cohorts from 1908 through 1983 (fitted cohort patterns [FCPs]). The FCPs and FCP incidence rate ratios (IRRs) were compared by site for Generation X (born between 1965 and 1980) and Baby Boomers (born between 1946 and 1964). A total of 3.8 million individuals with invasive cancer (51.0% male; 8.6% Asian or Pacific Islander, 9.5% Hispanic, 10.4% non-Hispanic Black, and 71.5% non-Hispanic White) were included in the analysis. In Generation X vs Baby Boomers, FCP IRRs among women increased significantly for thyroid (2.76; 95% CI, 2.41-3.15), kidney (1.99; 95% CI, 1.70-2.32), rectal (1.84; 95% CI, 1.52-2.22), corpus uterine (1.75; 95% CI, 1.40-2.18), colon (1.56; 95% CI, 1.27-1.92), and pancreatic (1.39; 95% CI, 1.07-1.80) cancers; non-Hodgkins lymphoma (1.40; 95% CI, 1.08-1.82); and leukemia (1.27; 95% CI, 1.03-1.58). Among men, IRRs increased for thyroid (2.16; 95% CI, 1.87-2.50), kidney (2.14; 95% CI, 1.86-2.46), rectal (1.80; 95% CI, 1.52-2.12), colon (1.60; 95% CI, 1.32-1.94), and prostate (1.25; 95% CI, 1.03-1.52) cancers and leukemia (1.34; 95% CI, 1.08-1.66). Lung (IRR, 0.60; 95% CI, 0.50-0.72) and cervical (IRR, 0.71; 95% CI, 0.57-0.89) cancer incidence decreased among women, and lung (IRR, 0.51; 95% CI, 0.43-0.60), liver (IRR, 0.76; 95% CI, 0.63-0.91), and gallbladder (IRR, 0.85; 95% CI, 0.72-1.00) cancer and non-Hodgkins lymphoma (IRR, 0.75; 95% CI, 0.61-0.93) incidence decreased among men. For all cancers combined, FCPs were higher in Generation X than for Baby Boomers because gaining cancers numerically overtook falling cancers in all groups except Asian or Pacific Islander men. In this model-based cohort analysis of incident invasive cancer in the general population, decreases in lung and cervical cancers in Generation X may be offset by gains at other sites. Generation X may be experiencing larger per-capita increases in the incidence of leading cancers than any prior generation born in 1908 through 1964. On current trajectories, cancer incidence could remain high for decades.

Post-inflationary leptogenesis and dark matter production: metric versus Palatini formalism

We investigate production of non-thermal dark matter particles and heavy sterile neutrinos from inflaton during the reheating era, which is preceded by a slow-roll inflationary epoch with a quartic potential and non-minimal coupling (ξ) between inflaton and gravity. We compare our analysis between metric and Palatini formalism. For the latter, the tensor-to-scalar ratio, r, decreases with ξ. We find that for ξ = 0.5 and number of e-folds ~ 60, r can be as small as ~ O\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$ \\mathcal{O} $$\\end{document} (10−3) which may be validated at future reaches of upcoming CMB observation such as CMB-S4 etc. We identify the permissible range of Yukawa coupling yχ between inflaton and fermionic DM χ, to be O\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$ \\mathcal{O} $$\\end{document} (10−3.5) ≳ yχ ≳ O\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$ \\mathcal{O} $$\\end{document} (10−20) for metric formalism and O\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$ \\mathcal{O} $$\\end{document} (10−4) ≳ yχ ≳ O\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$ \\mathcal{O} $$\\end{document} (10−11) for Palatini formalism which is consistent with current PLANCK data and also within the reach of future CMB experiments. For the scenario of leptogenesis via the decay of sterile neutrinos produced from inflaton decay, we also investigate the parameter space involving heavy neutrino mass MN1 and Yukawa coupling yN1 of sterile neutrino with inflaton, which are consistent with current CMB data and successful generation of the observed baryon asymmetry of the universe via leptogenesis. In contrast to metric formalism, in the case of Palatini formalism, for successful leptogenesis to occur, we find that yN1 has a very narrow allowable range and is severely constrained from the consistency with CMB predictions.

Structural Determinants of Peptide Nanopore Formation.

We have evolved the nanopore-forming macrolittin peptides from the bee venom peptide melittin using successive generations of synthetic molecular evolution. Despite their sequence similarity to the broadly membrane permeabilizing cytolytic melittin, the macrolittins have potent membrane selectivity. They form nanopores in synthetic bilayers made from 1-palmitoyl, 2-oleoyl-phosphatidylcholine (POPC) at extremely low peptide concentrations and yet have essentially no cytolytic activity against any cell membrane, even at high concentration. Here, we explore the structural determinants of macrolittin nanopore stability in POPC bilayers using atomistic molecular dynamics simulations and experiments on macrolittins and single-site variants. Simulations of macrolittin nanopores in POPC bilayers show that they are stabilized by an extensive, cooperative hydrogen bond network comprised of the many charged and polar side chains interacting with each other via bridges of water molecules and lipid headgroups. Lipid molecules with unusual conformations participate in the H-bond network and are an integral part of the nanopore structure. To explore the role of this H-bond network on membrane selectivity, we swapped three critical polar residues with the nonpolar residues found in melittin. All variants have potency, membrane selectivity, and cytotoxicity that were intermediate between a cytotoxic melittin variant called MelP5 and the macrolittins. Simulations showed that the variants had less organized H-bond networks of waters and lipids with unusual structures. The membrane-spanning, cooperative H-bond network is a critical determinant of macrolittin nanopore stability and membrane selectivity. The results described here will help guide the future design and optimization of peptide nanopore-based applications.

Highly diverse microbial community of regenerated seedlings reveals the high capacity of the bulb in lily, Lilium brownii.

Lily bulbs, which have both nutrient storage and reproductive functions, are a representative group of plants for studying the maintenance and transfer of plant-associated microbiomes. In this study, a comparison of the microbial composition of bulbs and their regenerated seedlings cultured under aseptic conditions, as well as subcultured seedlings that succeeded five times, was examined by amplicon sequencing. A total of 62 bacterial taxa and 56 fungal taxa were found to be transferred to the 5th generation in seedlings, which are the core microbiome of lily. After the regeneration of seedlings from bulbs, there was a significant increase in the number of detectable microbial species, and after 1, 3, and 5 successive generations, there was a decrease in the number of detectable species. Interestingly, some "new" microorganisms appeared in each generation of samples; for instance, 167 and 168 bacterial operational taxonomic units (OTUs) in the 3rd and 5th generations of seedlings that were not detected in either bulbs or seedlings of the previous two generations. These results suggest that bulbs can maintain a high diversity of microorganisms, including some with ultra-low abundance, and have a high transfer capacity to tuck shoots through continuous subculture. The diversity and maintenance of the microbiome can provide the necessary microbial reservoir support for regenerating seedlings. This habit of maintaining low abundance and high diversity may be biologically and ecologically critical for maintaining microbiome stability and function due to the sequestration nature of the plant.

Price and durability decisions on successive generations of electronic durable goods under incremental innovation

ABSTRACT This research explores the decision-making processes of manufacturers regarding pricing and durability of electronic durable products across successive generations. By constructing a two-stage model, we derived the optimal pricing strategy and production strategy for manufacturers. Specifically, we considered the impact of price reductions on older products and pre-launch activities for new products on consumer behavior, especially that of strategic consumers. An interesting finding is that traditional sales strategies of discounting older products do not increase revenue, but rather harm overall profits. Our results provide guidance for manufacturers of electronic durable goods in formulating strategies for product upgrades and new product sales strategies.

ATHENA: A phase 1/2 study of AZD5851, a chimeric antigen receptor (CAR) T-cell therapy directed against GPC3 in adult patients with advanced/recurrent hepatocellular carcinoma (HCC).

TPS2675 Background: Checkpoint inhibitor therapy is the standard first-line treatment for advanced/recurrent HCC, but there is a significant unmet therapeutic need for patients (pts) who progress after first-line treatment. Adoptive cellular immunotherapy may provide a novel treatment option. Glypican-3 (GPC3), a heparan sulfate proteoglycan, is overexpressed by tumor cells in HCC and virtually absent in healthy tissues, making it an ideal target for CAR-T therapy. AZD5851 is an autologous CAR-T product that expresses a CAR specific for GPC3 and a dominant negative (dn)TGFβRII as an armoring strategy. Expression of dnTGFβRII can block TGFβ signaling, protecting CAR T-cells from the immunosuppressive effects of this cytokine. Early clinical data with C-CAR031, a CAR-T product with the same GPC3-specific CAR and dnTGFβRII-armoring transgene as AZD5851, showed promising tolerability and antitumor activity in pts with HCC [1]. ATHENA (NCT06084884) is a first-in-human, single-arm, open-label, multicenter phase 1/2 study to evaluate the safety, tolerability, and antitumor activity of AZD5851 in pts with GPC3+ advanced/recurrent HCC, for whom ≥1 prior line of standard therapy failed or was not tolerable. Methods: Eligible pts are aged ≥18 years with histologically confirmed advanced/recurrent or metastatic and/or unresectable HCC, GPC3+ tumor sample as determined by immunohistochemistry, ≥1 prior line of standard systemic therapy, ≥1 measurable lesion per RECIST 1.1, Child-Pugh A, ECOG PS 0/1, and adequate organ and bone marrow function. Approximately 24 pts will be enrolled in Part A (Phase I, dose escalation) and 50 in Part B (Phase II dose expansion). Pts will undergo apheresis to collect peripheral blood mononuclear cells for AZD5851 production, after which they may receive approved bridging therapy for disease control. Upon successful generation of AZD5851 product, pts will undergo lymphodepletion before receiving a single dose of IV AZD5851. Subsequent follow-up is divided into 3 stages: Stage 1, active follow-up of all pts through 6 months post AZD5851 infusion; Stage 2, further evaluation of pts who have not progressed or started a new anticancer regimen during Stage 1; Stage 3, long-term follow-up for all pts who have received AZD5851. The primary endpoints are to assess the safety/tolerability of AZD5851 (both study parts), and to determine the recommended dose(s) of AZD5851 for expansion and phase 2 trials (Part A). Secondary endpoints include efficacy (objective response rate, best overall response, duration of response, disease control rate, durable response rate, time to response, progression-free survival, and overall survival) and pharmacokinetics. Exploratory endpoints include pharmacodynamic biomarkers and immunogenicity. Enrollment began Nov 2023. 1. Zhang et al. AACR 2023. Abstract CT097. Clinical trial information: NCT06084884 .

Shotgun metagenomic analysis of microbiota dynamics during long-term backslopping fermentation of traditional fermented milk in a controlled laboratory environment

Traditional fermented milks are produced through an inoculation process that involves the deliberate introduction of microorganisms that have been adapted and perpetuated across successive generations. However, the changes in the microbiota of traditional fermented milk during long-term inoculation fermentation in a laboratory environment remain unclear. In this study, we collected 5 samples of traditional fermented milk samples from 5 different counties in Tibet (3 kurut products) and Xinjiang (2 tarag products) of China, which served as starter cultures for a 9-mo continuous inoculation fermentation experiment. We analyzed the inter- and intra-population variations in the microbial communities of the collected samples, representing their macrodiversity and microdiversity, using shotgun metagenomic sequencing. Across all samples, we obtained a total of 186 high-quality metagenomic-assembled genomes, including 7 genera and 13 species with a relative abundance of more than 1%. The majority of these genomes were annotated as Lactobacillus helveticus (60.46%), Enterococcus durans (9.52%), and Limosilactobacillus fermentum (6.23%). We observed significant differences in species composition and abundance among the 5 initial inoculants. During the long-term inoculation fermentation, we found an overall increasing trend in species diversity, composition, and abundances of carbohydrate metabolism module-encoding genes in the fermented milk bacterial metagenome, while the fermented milk virome exhibited a relatively narrow range of variation. Lactobacillus helveticus, a dominant species in traditional fermented milk, displayed high stability during the long-term inoculation fermentation. Our study provides valuable insights for the industrial production of traditional fermented milk.

Gamma irradiation induced thermotolerance in Metarhizium spp. enhancing biocontrol of Nilapavarta lugens (Stål)

The Brown Planthopper (BPH), Nilaparvata lugens (Stål), is a devastating pest to rice crops in Southeast Asia, primarily due to its resistance to insecticides. As a result, the fungus Metarhizium spp. is used as an alternative control for BPH. However, their efficiency is limited due to delayed infectivity and sensitivity to environmental variables. In this study, two isolates of Metarhizium spp. MLUBN038 and MNMHN031, were induced for thermotolerance and biocontrol potential against Nilapavarta lugens (Stål). A multilocus phylogeny of four protein-coding genes including Beta-tubulin, rpb1, rpb2, and tef has identified the two isolates to be Metarhizium koreanum. Seventy-nine potential thermotolerant mutants were screened from the two isolates. These mutant isolates demonstrated significant tolerance to vegetative heat at 39 °C and enhanced resistance to wet heat stress at 45 °C after exposure for 60 h, outperforming the wild-type (WT) isolates. The mutant isolates also showed increased mycelial growth, conidial germination, and spore production compared to the WT isolates. Two mutant isolates, ML038_Mt 71 and MN031_Mt 46, exhibited the highest efficacy against BPH nymphs (4th-5th instars), resulting in a maximum mortality of 88.82 % and 83.55 %, respectively, compared to the WT (54.07 % and 47.54 %) after 14 days of inoculation in the greenhouse. These two highly virulent mutant isolates presented the lowest LT50 values of 2.88 and 3.72 days at a concentration of 1 × 109 conidia/mL. RAPD analysis revealed genetic diversity between the mutant and WT isolates, indicating distinct diversity profiles and supporting the successful generation of mutant variants. These findings suggest that the use of gamma irradiation and heat stress to induce mutations is crucial for the successful production of thermotolerant mutant isolates. Our results suggest that ML031_Mt 71 and MN031_Mt 46 have potential as effective biocontrol agents.

Caring for herd animals in Isluga

Chapter 3 of the book Earth, Water, Fleece and Fabric, first published in 2002, is presented in this article. It is based on periods of fieldwork carried out between 1986 and the late 1990s. In the previous chapter of the book, it was suggested that camelid domestication arose from the taming of successive generations of animals as part of the daily practices of herding. Domestication was not a once and forall event in the distant past. The present article focuses on the thick description of Isluga people’s herding strategies duringthe 1980s and 1990s. Isluga is an Aymara community in the Chilean highlands, bordering with Bolivia. Caring for camelidsin this community constitutes a process whereby herders sustain and renew lasting relationships between human beingsand herd animals. Cycles of time and space are described in order to contextualisehow and where the herders look after their llamas, alpacas and sheep. All Souls Day marks the arrival of the rainy seasonand Carnival is the event which brings it to an end. The austral summer solstice occurs on the cusp between these two festivalsand coincides with the fiesta of St. Thomas. Isluga people call themselves the «children of Saint Thomas», in a tradition which is inscribed in the topography of their territory. The other season of the year is cold and dry. It is associated with the winds of St. James the Greater and St. Anthony of Padua.The annual cycle therefore unfolds in a calendar of saints’ days accompanied by atmospheric phenomena, which nurturethe pasture grounds. The herding activities take place in a volcanic landscape associatedwith land forms which are perceived to be animated and gendered. The earth is personified as the Wirjin Tayka or Pachamama and the hills as Uywiri. Isluga people engage with these beings on a daily basis. These land forms can serve as aviadores, «providers», associated with the fertility and wellbeing of camelids and sheeps. The composition of the herds of llamas and alpacas is analysed, as well as the classifications Isluga people make accordingto age and gender. Camelid nomenclature is based on the disposition of dark and light colours in the coat of llamas and alpacas. Isluga people use names for their camelids which are intimately related to birds and other beings in their surroundings.The dense description offered makes it possible to analyse the regenerative cycle of water, pasture and fleece in a comparative ethnography, in the light of themes developed in other parts of the book, from which this article has been extracted.

Environment-induced heritable variations are common in Arabidopsis thaliana

Parental or ancestral environments can induce heritable phenotypic changes, but whether such environment-induced heritable changes are a common phenomenon remains unexplored. Here, we subject 14 genotypes of Arabidopsis thaliana to 10 different environmental treatments and observe phenotypic and genome-wide gene expression changes over four successive generations. We find that all treatments caused heritable phenotypic and gene expression changes, with a substantial proportion stably transmitted over all observed generations. Intriguingly, the susceptibility of a genotype to environmental inductions could be predicted based on the transposon abundance in the genome. Our study thus challenges the classic view that the environment only participates in the selection of heritable variation and suggests that the environment can play a significant role in generating of heritable variations.

Insights into the Pathogenesis and Development of Recombinant Japanese Encephalitis Virus Genotype 3 as a Vaccine.

Japanese encephalitis virus (JEV), a flavivirus transmitted by mosquitoes, has caused epidemics and severe neurological diseases in Asian countries. In this study, we developed a cDNA infectious clone, pBAC JYJEV3, of the JEV genotype 3 strain (EF571853.1) using a bacterial artificial chromosome (BAC) vector. The constructed infectious clone was transfected into Vero cells, where it exhibited infectivity and induced cytopathic effects akin to those of the parent virus. Confocal microscopy confirmed the expression of the JEV envelope protein. Comparative analysis of growth kinetics revealed similar replication dynamics between the parental and recombinant viruses, with peak titers observed 72 h post-infection (hpi). Furthermore, plaque assays demonstrated comparable plaque sizes and morphologies between the viruses. Cryo-electron microscopy confirmed the production of recombinant virus particles with a morphology identical to that of the parent virus. Immunization studies in mice using inactivated parental and recombinant viruses revealed robust IgG responses, with neutralizing antibody production increasing over time. These results showcase the successful generation and characterization of a recombinant JEV3 virus and provide a platform for further investigations into JEV pathogenesis and vaccine development.