Aqueous zinc-ion batteries (ZIBs) provide a safer and cost-effective energy storage solution by utilizing nonflammable water-based electrolytes. Although many research efforts are focused on optimizing zinc anode materials, developing suitable cathode materials is still challenging. In this study, one-dimensional, mixed-phase MnO2 nanorods are synthesized using ionic liquid (IL). Here, the IL acts as a structure-directing agent that modifies MnO2 morphology and introduces mixed phases, as confirmed by morphological, structural, and X-ray photoelectron spectroscopy (XPS) studies. The MnO2 nanorods developed by this method are utilized as a cathode material for ZIB application in the coin-cell configuration. As expected, Zn//MnO2 nanorods show a significant increase in their capacity to 347 Wh kg-1 at 100 mA g-1, which is better than bare MnO2 nanowires (207.1 Wh kg-1) synthesized by the chemical precipitation method. The battery is highly rechargeable and maintains good retention of 86% of the initial capacity and 99% Coulombic efficiency after 800 cycles at 1000 mA g-1. The ex situ XPS, X-ray diffraction, and in-depth electrochemical analysis confirm that MnO6 octahedra experience insertion/extraction of Zn2+ with high reversibility. This study suggests the potential use of MnO2 nanorods to develop high-performance and durable battery electrode materials suitable for large-scale applications.