The education system in Malaysia is in the process creating a paradigm shift from implementing an external evaluation to School Based Assessment (SBA). The Malaysia Education Blueprint 2015-2025 (Higher Education) or the MEB (HE) (Ministry of Higher Education, 2015) is formulated based on the vision and aspiration of Malaysia Education Development Plan (2013-2015) and National Higher Education Strategic Plan (Pelan Strategik Pengajian Tinggi Negara (PSPTN)) in educating students who are knowledgeable, skilled and talented to face the challenges of the 21st century. Shift 1 of the blueprint aims to foster graduates who are holistic, balanced and entrepreneurial in line with the National Education Philosophy. This footstep is closely applied by the Ministry of Education to develop the holistic student profile in the schools. A new evaluation combines the three domains of cognitive, affective and psychomotor instead of focusing on the cognitive domain (DC) those are taken into account in determining student's achievement. This study was conducted to identify the impact on assessment using Outcome Based Education (OBE) through the application of project-based learning (PjBL) by comparing it with the current academic achievement ranking using DC only. All domains involved were represented by academic (cognitive domain), social skills (affective domain) and manipulative skills (psychomotor domain). This study also take into account to determine the impact of students’ assessment in the cognitive domain using Outcome-based Education (OBE) through the application of Project-based Learning (PjBL) compared to Traditional Learning (TL) in the topic of ‘Threatened Ecosystem.’ This study is a quantitative research using quasi-experimental design. A total of 30 Form 4 science stream students were selected using purposive sampling. This study demonstrated that there is no significant difference between the traditional learning (TL) and project-based learning (PJBL) to evaluate students’ cognitive domain. Assessment outlined in the Outcome-based Education is a good evaluation method to be applied to the secondary Based on these findings it is proposed evaluation in OBE through PjBL method is of a better assessment tool to be applied to secondary school, preferably the science stream students. This enables them to be evaluated in a more holistic manner which is in line with the full implementation of PBS in the near future. Subsequently, students’ achievement in affective and psychomotor domains should be carried out to oversee the effect onto the holistic evaluation as outlined in OBE.
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