Stream Metabolism Research Articles

Two‐stage metabolism inferred from diel oxygen dynamics in aquatic ecosystems

AbstractDynamics of dissolved oxygen in aquatic ecosystems reflect the biological, physical, and chemical processes that regulate ecosystem metabolism. Organic matter that supports ecosystem respiration (ER) is produced both by in situ photosynthesis and via loading from terrestrial ecosystems. Terrestrial‐derived organic matter is relatively recalcitrant and its availability is stable at diel time scales relative to substrates produced through photosynthesis, which are more labile and often show distinct diel changes in availability. Here, we explored whether the contributions of these two sources of organic matter to ecosystem metabolism could be quantified by a process model of photosynthesis and ER fit to high‐frequency observations of oxygen concentration in streams. We found that a two‐stage model of respiration provided a better fit to diel oxygen dynamics in most streams than a model assuming that the substrates supporting ER were one temporally stable pool. Two‐stage models estimated peak daytime respiration rates that were ~2.9× higher on average than nighttime rates, but this increase was variable and ranged from 1.1 to 11.6×. Estimates of gross primary production were 1.35× higher, on average, (range = 1.04–7.91×) compared to estimates generated by a single‐stage model. Streams draining watersheds with less than about 7% gradient exhibited oxygen dynamics that provided comparable statistical support for single‐stage metabolism, likely due to the higher loading of allochthonous organic matter that swamped metabolism based on autochthonous production in these streams. Ecosystem metabolism in streams draining steeper watersheds was best characterized by two‐stage metabolism, reflecting the greater importance of autochthonous contributions to labile organic carbon pools in these ecosystems.

Periodic sediment shift in migrating ripples influences benthic microbial activity

AbstractMigrating bedforms have high levels of particulate organic matter and high rates of pore water exchange, causing them to be proposed as hot spots of carbon turnover in rivers. Yet, the shifting of sediments and associated mechanical disturbance within migrating bedforms, such as ripples, may stress and abrade microbial communities, reducing their activity. In a microcosm experiment, we replicated the mechanical disturbances caused by the periodic sediment shift within ripples under oligotrophic conditions. We assessed the effects on fungal and bacterial biomass ratio (F:B), microbial community respiration (CR), and bacterial production (BCP) and compared with stable undisturbed sediments. Interactions between periodic mechanical disturbance and sediment‐associated particulate organic matter (POM) were tested by enriching sediments collected from migrating ripples with different qualities of POM (fish feces, leaf litter fragments and no addition treatments). F:B and BCP were affected by an interaction between mechanical disturbance and POM quality. Fish feces enriched sediments showed increased F:B and BCP compared to sediments with lower POM quality and responded with a decrease of F:B and BCP to sediment disturbance. In the other POM treatments F:B and BCP were not affected by disturbance. Microbial respiration was however reduced by mechanical disturbance to similar low activity levels regardless of POM qualities added, whereas fish feces enriched sediment showed short temporary boost of CR. With the worldwide proliferation of migrating sand ripples due to massive catchment erosion, suppressed mineralization of POM will increasingly affect stream metabolism, downstream transport of POM and carbon cycling from reach to catchment scale.

Impact of seasonal changes in stream metabolism on nitrate concentrations in an urban stream

Nitrate (NO3 −) dynamics in urban streams differ from many natural streams due to stormwater runoff, sewage inputs, decreased groundwater discharge, often limited hyporheic exchange, increased primary productivity, and limited carbon input. We investigated NO3 − dynamics in a first-order urban stream in Syracuse, NY, which has urbanized headwaters and a geomorphologically natural downstream section. Twice-monthly water sampling, NO3 − injection tests, NO3 − isotopic analysis, filamentous algae mat density, and riparian shading were used to identify processes regulating NO3 − dynamics in the stream over a 12-month period. The urban headwater reach had low NO3 − (0.006–0.2 mg N/L) in the spring through fall, with a minimum uptake length of 900 m, no canopy cover, and high algae mat density. The downstream natural reach (100% canopy cover during the summer and low algae mat density) had nitrate concentrations between 0.6 and 1.2 mg N/L from winter to summer, which decreased during autumn leaf-off. In the urban reach, autotrophic uptake by filamentous green algae is a major NO3 − sink in summer. In the natural reach, the addition of organic matter to the stream at leaf-off led to a decrease in NO3 − concentration followed by an increase in NO3 − concentration in winter as gross primary productivity decreased. This study shows that the balance between autotrophy and heterotrophy in urban streams is variable and depends on an interplay of drivers such as temperature, light, and carbon inputs that are mediated by the riparian ecosystem.

Agricultural influences on the magnitude of stream metabolism in humid tropical headwater streams

The production and respiration of organic carbon in streams (stream metabolism) is a fundamental ecosystem process. The extent to which the magnitude of stream metabolism changes with forest conversion to agriculture in humid tropical headwaters is poorly understood. We measured whole-stream metabolism in headwaters draining forest-agricultural boundaries to investigate metabolic rates in areas with abrupt land-use transitions and the role of remnant riparian vegetation. We used linear mixed models to test the hypotheses that gross primary production (GPP) and ecosystem respiration (ER) would be higher in agricultural areas due to higher light availability and nutrient concentrations, respectively. We found a 257% increase in GPP and 30% increase in ER in agricultural stream reaches. GPP was driven by light and ER was mainly controlled by GPP. These results highlight the overriding influence of light in agricultural streams with large fractions of upstream forest cover. Our findings suggest that high riparian canopy cover (~90%) is necessary to support stream metabolic rates similar to forests in agricultural areas. This study adds to our understanding of the within-biome variation of metabolism resulting from agriculture, and the potential similarities between forested biomes and the role of tropical streams in the global carbon cycle.

Recovery and resilience of urban stream metabolism following Superstorm Sandy and other floods

AbstractUrban streams are exposed to multiple different stressors on a regular basis, with increased hydrological flashiness representing a common urban stream stressor. Stream metabolism, the coupled ecosystem functions of gross primary production (GPP) and ecosystem respiration (ER), controls numerous other ecosystem functions and integrates multiple processes occurring within streams. We examined the effect of one large (Superstorm Sandy) and multiple small and moderately sized flood events in Baltimore, Maryland, to quantify the response and recovery of urban stream GPP and ER before and after floods of different magnitudes. We also compared GPP and ER before and after Superstorm Sandy to literature values. We found that both GPP and ER decreased dramatically immediately following floods of varying magnitudes, but on average GPP was more reduced than ER (80% and 66% average reduction in GPP and ER, respectively). Both GPP and ER recovered rapidly following floods within 4–18 d, and recovery intervals did not differ significantly between GPP and ER. During the two‐week recovery following Superstorm Sandy, two urban streams exhibited a range of metabolic activity equivalent to ~15% of the entire range of GPP and ER reported in a recent meta‐analysis of stream metabolism. Urban streams exhibit a substantial proportion of the natural variation in metabolism found across stream ecosystems over relatively short time scales. Not only does urbanization cause increased hydrological flashiness, it appears that metabolic activity in urban streams may be less resistant, but also more resilient to floods than in other streams draining undeveloped watersheds, which have been more studied. Our results show that antecedent conditions must be accounted for when drawing conclusions about stream metabolism measurements, and the rapid recovery and resilience of urban streams should be considered in watershed management and stream restoration strategies targeting ecosystem functions and services.

Corrigendum: Stream metabolism and the open diel oxygen method: Principles, practice, and perspectives

Limnology and Oceanography: MethodsVolume 15, Issue 2 p. 219-219 CorrigendumFree Access Corrigendum: Stream metabolism and the open diel oxygen method: Principles, practice, and perspectives This article corrects the following: Stream metabolism and the open diel oxygen method: Principles, practice, and perspectives Benoît O. L. Demars, Joshua Thompson, J. Russell Manson, Volume 13Issue 7Limnology and Oceanography: Methods pages: 356-374 First Published online: May 18, 2015 First published: 19 January 2017 https://doi.org/10.1002/lom3.10167Citations: 2AboutSectionsPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onFacebookTwitterLinkedInRedditWechat In our original paper, Demars, B. O. L., J. Thompson, and J. R. Manson. 2015. Stream metabolism and the open diel oxygen method: Principles, practice, and perspectives. Limnol. Oceanogr: Methods 13:356–374. The caption of Fig. 1 reads … increasing time lag with decreasing t, as previously reported … The correct sentence is … increasing time lag with decreasing k, as previously reported … The fraction α in the last row of Table 1 reads: 0.62 (0.02–5.95) The correct fraction α is 0.85 (0.51-1.15) In the supplementary information (FWB_2011_Hengill_site2_15-05-2013.xls) the oxygen exchange coefficient k2 (min−1) was calculated from mean travel time (τ in min), propane gas concentration (G) and discharge (Q) at the top and bottom stations of a stream reach following Demars et al. (1): with R script provided in supplementary information (Metabolism_Demars_Method_hengill.r), also with an error: data$Koxygen <-1.39*(1/data$Travtime)*log((data$Gtop*data$Qtop)/(data$Gbot*data$Qtop)) The correct equation is: with corrected R script:data$Koxygen <- 1.39*(1/data$Travtime)*log((data$Gtop*data$Qtop)/(data$Gbot*data$Qbot)) Note the use of discharge is simply to correct for lateral inflows. This correction should not be applied when lateral loss of water occurs, i.e., , because the loss of water over the reach does not affect gas concentration. So when , we simply have: with corresponding R script:data$Koxygen <- 1.39*(1/data$Travtime)*log((data$Gtop)/(data$Gbot)) The results published by Demars et al. (2011) remain virtually unchanged. The observed activation energies (temperature dependence) of ecosystem respiration (Er) and gross primary production (EP) were Er = 0.67 ±0.23 eV and Ep = 0.54 ± 0.24 eV, respectively. The corrected values are Er = 0.69 ±0.19 eV and Ep = 0.56 ± 0.19 eV, respectively. The normalised (at 15°C) absolute metabolic flux of gross primary production and ecosystem respiration were overestimated by 16% and 18%, respectively. References 1Demars, B. O. L., and others. 2011. Temperature and the metabolic balance of streams. Freshwater Biol. 56: 1106– 1121. doi:10.1111/j.1365-2427.2010.02554.x Citing Literature Volume15, Issue2February 2017Pages 219-219 ReferencesRelatedInformation

Land use controls stream ecosystem metabolism by shifting dissolved organic matter and nutrient regimes

Summary Stream ecosystem metabolism integrates production and respiration of organic matter and plays a fundamental role in the global carbon (C) cycle. Several studies have identified distal and proximal physical controls, for example, land use and transient storage, or the effects of water chemistry, that is, organic matter and nutrient availability, on stream metabolism. In parallel, research on organic matter quality has identified conspicuous gradients of chemical composition, yet mostly without demonstrating any functional implications. We hypothesise that organic matter holds a key position in a more comprehensive causal framework of stream ecosystem metabolism, and that a concurrent study can improve mechanistic understanding. Specifically, we here postulate that dissolved organic matter (DOM) quality, that is, its chemical composition, acts as a control of ecosystem respiration (ER) as much as it is a result of gross primary production (GPP). As such, DOM quality likely forms a central link between land use and stream metabolism, besides known physical controls including transient storage and light availability. To examine these hypotheses, we studied 33 streams in north‐eastern Austria, a region with diverse land use ranging from semi‐natural, forested areas to agricultural areas and settlements. We analysed DOM composition by absorbance and fluorescence spectroscopy, including modelling excitation–emission matrices with parallel factor analysis. We then opposed these data to GPP and ER estimated by fitting a metabolism model to single‐station diurnal oxygen records. Structural equation modelling revealed land use as a control on light conditions, DOM composition and concentration and nutrient concentrations, which together ultimately shaped GPP and ER. In particular, humified, coloured and aromatic DOM of predominantly terrestrial origin was prevalent in coniferous forest catchments and increased stream ER. Agricultural and urban areas enriched streams with phosphorous and nitrogen, which increased ER and GPP. Besides nutrients, GPP seemed to be weakly correlated with light availability and – in contrast to our hypothesis – left only a weak imprint on DOM composition. Land‐use change is rated as the most pervasive human influence on natural ecosystems and our results highlight its impact on aquatic GPP and ER in streams. To understand the role of inland waters in the global C cycle will require mechanistic understanding of ecosystem metabolism, which notably includes organic matter quality as a hitherto underappreciated key player.

Influence of catchment land use and seasonality on dissolved organic matter composition and ecosystem metabolism in headwater streams of a Kenyan river

Headwater streams influence the biogeochemical characteristics of large rivers and play important roles in regional and global carbon budgets. The combined effects of seasonality and land use change on the biogeochemistry of headwater streams, however, are not well understood. In this study we assessed the influence of catchment land use and seasonality on the composition of dissolved organic matter (DOM) and ecosystem metabolism in headwater streams of a Kenyan river. Fifty sites in 34 streams draining a gradient of catchment land use from 100% natural forest to 100% agriculture were sampled to determine temporal and spatial variation in DOM composition. Gross primary production (GPP) and ecosystem respiration (ER) were determined in 10 streams draining primarily forest or agricultural catchments. Absorbance and fluorescence spectrophotometry of DOM reflected notable shifts in composition along the land use gradient and with season. During the dry season, forest streams contained higher molecular weight and terrestrially derived DOM, whereas agricultural streams were dominated by autochthonous production and low molecular weight DOM. During the rainy season, aromaticity and high molecular weight DOM increased in agricultural streams, coinciding with seasonal erosion of soils and inputs of organic matter from farmlands. Most of the streams were heterotrophic. However, GPP and ER were generally greater in agricultural streams, driven by higher dissolved nutrient (mainly TDN) concentrations, light availability (open canopy) and temperature compared with forest streams. There were correlations between freshly and autochthonously produced DOM, GPP and ER during both the dry and wet seasons. This is one of the few studies to link land-use with organic carbon dynamics and DOM composition. Measures of ecosystem metabolism in these streams help to affirm the role of tropical streams and rivers as important components of the global carbon cycle and demonstrate that even semi-intensive, smallholder agriculture can have measurable effects on riverine ecosystem functioning.

Land use affects temporal variation in stream metabolism

AbstractStream metabolism (gross primary production and ecosystem respiration) is increasingly used to assess waterway health because mean values are responsive to spatial variation in land use, but little is known about how human land use influences the temporal variability of stream metabolism. We investigated daily variation in dissolved O2 (DO) concentrations and calculated mean and within-season variation in gross primary production (GPP) and ecosystem respiration (ER) rates at 13 stream sites across a landuse intensity gradient in the Auckland region, New Zealand, over 9 y. Based on generalized linear mixed models, mean daily GPP (0.1–12.6 g O2 m−2 d−1) and ER (1.8–29.6 g O2 m−2 d−1) and seasonal variation in stream metabolism were significantly related to landuse intensity with higher variability associated with higher values of a landuse stress score. Overall, mean daily rates and day-to-day variation in GPP and ER were greatest in summer and least in winter. We recommend summer monitoring over a ...

Watershed Land Use and Seasonal Variation Constrain the Influence of Riparian Canopy Cover on Stream Ecosystem Metabolism.

Ecosystem metabolism is an important determinant of trophic structure, nutrient cycling, and other critical ecosystem processes in streams. Whereas watershed- and local-scale controls on stream metabolism have been independently investigated, little is known about how controls exerted at different scales interact to determine stream metabolic rates, particularly in urban streams and across seasons. To address this knowledge gap, we measured ecosystem metabolism in four urban and four reference streams in northern Kentucky, USA, with paired closed and open riparian canopies, during each of the four seasons. Gross primary production (GPP), ecosystem respiration, and net ecosystem production (NEP) were all best predicted by models with season as a main effect, but interactions between season, canopy, and watershed varied for each response. Urban streams exhibited higher GPP during most seasons, likely due to elevated nutrient loads. Open canopy reaches in both urban and forested streams, supported higher rates of GPP than the closed canopy which reaches during the summer and fall, when the overhead vegetation shaded the closed reaches. The effect of canopy cover on GPP was similar among urban and forested streams. The combination of watershed and local-scale controls resulted in urban streams that alternated between net heterotrophy (NEP <0) and net autotrophy (NEP >0) at the reach-scale during seasons with dense canopy cover. This finding has management relevance because net production can lead to accumulation of algal biomass and associated issues like nighttime hypoxia. Our study suggests that although watershed urbanization fundamentally alters ecosystem function, the preservation and restoration of canopied riparian zones can provide an important management tool at the local scale, with the strongest impacts on stream metabolism during summer.

Continuous Dissolved Oxygen Measurements and Modelling Metabolism in Peatland Streams.

Stream water dissolved oxygen was monitored in a 3.2km2 moorland headwater catchment in the Scottish Highlands. The stream consists of three 1st order headwaters and a 2nd order main stem. The stream network is fringed by peat soils with no riparian trees, though dwarf shrubs provide shading in the lower catchment. Dissolved oxygen (DO) is regulated by the balance between atmospheric re-aeration and the metabolic processes of photosynthesis and respiration. DO was continuously measured for >1 year and the data used to calibrate a mass balance model, to estimate primary production, respiration and re-aeration for a 1st order site and in the 2nd order main stem. Results showed that the stream was always heterotrophic at both sites. Sites were most heterotrophic in the summer reflecting higher levels of stream metabolism. The 1st order stream appeared more heterotrophic which was consistent with the evident greater biomass of macrophytes in the 2nd order stream, with resulting higher primary productivity. Comparison between respiration, primary production, re-aeration and potential physical controls revealed only weak relationships. However, the most basic model parameters (e.g. the parameter linking light and photosynthesis) controlling ecosystem processes resulted in significant differences between the sites which seem related to the stream channel geometry.

Ecosystem structure and function in two branches of an eastern Minnesota, USA, trout stream

ABSTRACTAmong freshwater systems, coldwater habitats are among the most threatened by climate change. Examining the impacts of increasing water temperature requires the use of both traditional biomonitoring efforts and measures of ecosystem function and structure. We examined fish and macroinvertebrate communities, leaf decomposition rates, periphyton production, and ecosystem metabolism to compare two branches of a trout stream in Minnesota with differing thermal regimes. The cooler South Branch had more coldwater fish, a higher index of biological integrity for fish but a lower index for macroinvertebrates. There were no differences in leaf decomposition rates between branches, although non-native buckthorn leaves decomposed faster than native black cherry leaves. Periphyton production was higher in the North Branch than the South Branch. Both branches had high nitrogen but low phosphorus levels. Nutrient enrichment with phosphorus enhanced periphyton production in both branches. Measures of stream metabolism, based on diurnal variation in oxygen levels, showed that both branches were heterotrophic. Despite higher periphyton production in the North Branch, gross primary production was higher in the South Branch. The bioassessment measures used in our study yielded inconsistent results, pointing to the need for multiple methods to examine and better describe potential responses to warming from climate change.

Climate change and multiple stressors in small tropical streams

Despite the importance of small tropical streams for maintaining freshwater biodiversity and providing essential ecosystem services to humans, relatively few studies have investigated multiple-stressor effects of climate and land-use change on these ecosystems, and how these effects may interact. To illustrate these knowledge gaps, we reviewed the current state of knowledge regarding the ecological impacts of climate change and catchment land use on small tropical streams. We consider the effects of predicted changes in streamflow dynamics and water temperatures on water chemistry, habitat structure, aquatic biota, and ecosystem processes. We highlight the pervasive individual effects of climate and land-use change on algal, macroinvertebrate, and fish communities, and in stream metabolism and decomposition processes. We also discuss potential responses of tropical streams in a multiple-stressor scenario, considering higher temperatures and shifts in hydrological dynamics. Finally, we identify six key knowledge gaps in the ecology of low-order tropical streams and indicate future research directions that may improve catchment management in the tropics to help alleviate climate-change impacts and biodiversity losses.

Addressing the local aspects of global change impacts on stream metabolism using frequency analysis tools

Global change, as a combination of climate change, human activities on watersheds and the river flow regulation, causes intense changes in hydrological cycles and, consequently, threatens the good ecological status of freshwater biological communities. This study addresses how and whether the combination of climatic drivers and local human impacts may alter the metabolism of freshwater communities.We identified a few factors modulating the natural water flow and quality in 25 point spread within the Ebro river Basin: waste water spills, industrial spills, reservoir discharges, water withdrawals, agricultural use, and the presence of riparian forests. We assessed their impacts on the freshwater metabolism as changes in the annual cycle of both gross primary production—GPP – and ecosystem respiration—ER –. For this purpose, daily data series were analyzed by continuous wavelet transformation, allowing for the assessment of the metabolic ecosystem Frequency Spectrum Patterns (FSPs).Changes in the behavior of ecosystem metabolism were strongly associated with local characteristics at each sampling point, however in 20 out of 25 studied points, changes in metabolic ecosystem FSP were related to climatic change events (the driest period of the last 140years). The changes in FSP indicate that severe impacts on how biological communities use carbon sources occur as a result of the human water management – too much focus on human needs – during intense climatic events.Results show that local factors, and specially the flow regulation, may modulate the impact of global change. As example those points exposed to a more intense anthropization showed a clear disruption – and even disappearance – of the annual FSP. This information may help managers to understand the action mechanisms of non-climatic factors at ecosystem level, leading to better management policies based on the promotion of ecosystem resilience. The method here presented may help on improving the calculation of ecological flows to maintain the river metabolic annual cycles as close as possible to the natural ones.

Response of the hyporheic zone to transient groundwater fluctuations on the annual and storm event time scales

AbstractThe volume of the water stored in and exchanged with the hyporheic zone is an important factor in stream metabolism and biogeochemical cycling. Previous studies have identified groundwater direction and magnitude as one key control on the volume of the hyporheic zone, suggesting that fluctuation in the riparian water table could induce large changes under certain seasonal conditions. In this study, we analyze the transient drivers that control the volume of the hyporheic zone by coupling the Brinkman‐Darcy equation to the Navier‐Stokes equations to simulate annual and storm induced groundwater fluctuations. The expansion and contraction of the hyporheic zone was quantified based on temporally dynamic scenarios simulating annual groundwater fluctuations in a humid temperate climate. The amplitude of the groundwater signal was varied between scenarios to represent a range of annual hydrologic forcing. Storm scenarios were then superimposed on the annual scenario to simulate the response to short‐term storm signals. Simulations used two different groundwater storm responses; one in‐phase with the surface water response and one 14 h out‐of‐phase with the surface water response to represent our observed site conditions. Results show that annual groundwater fluctuation is a dominant control on the volume of the hyporheic zone, where increasing groundwater fluctuation increases the amount of annual variation. Storm responses depended on the antecedent conditions determined by annual scenarios, where the time of year dictated the duration and magnitude of the storm induced response of the hyporheic zone.

Life history traits and spawning behavior modulate ecosystem‐level effects of nutrient subsidies from fish migrations

AbstractMigratory animals can have profound impacts on ecosystem structure and function. In streams, salmon are well known for their contrasting influences on primary productivity through nutrient delivery, which enhances potential productivity, and substrate disturbance during nest building, which reduces algal biomass and primary production. However, most migratory fish species neither disturb the substrate significantly nor die en masse after spawning, hence their influence on ecosystems may differ from that observed in salmon streams. To determine the influence of nutrient subsidies from migrations of iteroparous fish whose broadcast spawning does not disturb the substrate substantially, we compared nutrient limitation, nutrient concentrations, and stream metabolism during spawning migrations of suckers (Catostomus spp.) in Lake Michigan tributaries with and without migration barriers. Although suckers deliver both nitrogen and phosphorus as eggs and waste excretion, only nitrogen concentrations were elevated during the migration (NH4‐N rose 44% relative to sites without a sucker run). Nutrient diffusing substrates demonstrated P‐limitation during the migration at sites spanning a wide range of sucker abundance, suggesting that high demand for likely masked P inputs from fish. Time series analyses indicated that gross primary production (GPP) increased with sucker excretion, but not with egg deposition after accounting for abiotic conditions. In contrast, egg deposition, but not excretion, was associated with a slight increase in ecosystem respiration (ER), suggesting that sucker gametes provide labile carbon that contributes to ER. The effects of suckers contrast with ecosystem responses to salmon migrations, which elevate ER but have mixed effects on GPP. This disparity reflects the fact that suckers fertilize streams without attendant disturbance effects. Our results suggest that basic differences in life history and behavior of migratory fish determine the direction and magnitude of their ecosystem effects. As a result, broad trait‐based predictions of the ecosystem role of migratory fishes may become possible as more species are studied.

Thinking beyond the Bioreactor Box: Incorporating Stream Ecology into Edge-of-Field Nitrate Management.

Around the world, artificially drained agricultural lands are significant sources of reactive nitrogen to stream ecosystems, creating substantial stream health problems. One management strategy is the deployment of denitrification enhancement tools. Here, we evaluate the factors affecting the potential of denitrifying bioreactors to improve stream health and ecosystem services. The performance of bioreactors and the structure and functioning of stream biotic communities are linked by environmental parameters like dissolved oxygen and nitrate-nitrogen concentrations, dissolved organic carbon availability, flow and temperature regimes, and fine sediment accumulations. However, evidence of bioreactors' ability to improve waterway health and ecosystem services is lacking. To improve the potential of bioreactors to enhance desirable stream ecosystem functioning, future assessments of field-scale bioreactors should evaluate the influences of bioreactor performance on ecological indicators such as primary production, organic matter processing, stream metabolism, and invertebrate and fish assemblage structure and function. These stream health impact assessments should be conducted at ecologically relevant spatial and temporal scales. Bioreactors have great potential to make significant contributions to improving water quality, stream health, and ecosystem services if they are tailored to site-specific conditions and implemented strategically with land-based and stream-based mitigation tools within watersheds. This will involve combining economic, logistical, and ecological information in their implementation.

Beyond the urban stream syndrome: organic matter budget for diagnostics and restoration of an impaired urban river

In response to water quality standard violations linked to excessive organic matter (OM) and a lack of sampling data informing the Total Maximum Daily Load (TMDL), an organic matter budget was created to quantify and identify sources of OM in the lower Jordan River (Salt Lake City, UT). By sampling dissolved, fine, and coarse particulate OM, as well as measuring ecosystem metabolism at seven different sites, the researchers aimed to identify the origin of excess OM, and understand pathways by which different size classes of the OM pool are generated. The dissolved fraction (DOM; 94 %) was found to be the dominant form of OM transported within the river with fine particulate organic matter (FPOM; 6 %) the second most abundant, and coarse particulate organic matter (CPOM; 1 %) transport relatively insignificant in the overall OM budget. Primary production exceeded respiratory losses in the upper river, and this, along with OM inputs from two tributaries (where water reclamation facilities discharge into the river) delivered excess OM to the impaired lower reaches. Increasing stream metabolism index (SMI) with distance downstream (>1 in the lower river) further demonstrated that transport of excessive organic matter into the lower river was from upstream sources and not due to lateral inputs. This simple approach to characterizing the organic matter budget as it relates to water quality in the Jordan River was effective and could serve as a model for future studies attempting to quantify and identify sources of OM in urban ecosystems.

Increasing fish taxonomic and functional richness affects ecosystem properties of small headwater prairie streams

Summary Stream fish can regulate their environment through direct and indirect pathways, and the relative influence of communities with different taxonomic and functional richness on ecosystem properties likely depends on habitat structure. Given this complexity, it is not surprising that observational studies of how stream fish communities influence ecosystems have shown mixed results. In this study, we evaluated the effect of an observed gradient of taxonomic (zero, one, two or three species) and functional (zero, one or two groups) richness of fishes on several key ecosystem properties in experimental stream mesocosms. Our study simulated small (less than two metres wide) headwater prairie streams with a succession of three pool‐riffle structures (upstream, middle and downstream) per mesocosm. Ecosystem responses included chlorophyll a from floating algal mats and benthic algae, benthic organic matter, macroinvertebrates (all as mass per unit area), algal filament length and stream metabolism (photosynthesis and respiration rate). Ecosystem responses were analysed individually using general linear mixed models. Significant treatment (taxonomic and functional richness) by habitat (pools and riffles) interactions were found for all but one ecosystem response variable. After accounting for location (upstream, middle and downstream) effects, the presence of one or two grazers resulted in shorter mean algal filament lengths in pools compared to no‐fish controls. These observations suggest grazers can maintain short algal filaments in pools, which may inhibit long filaments from reaching the surface. Accordingly, floating algal mats decreased in mid‐ and downstream locations in grazer treatment relative to no‐fish controls. At the scale of the entire reach, gross primary productivity and respiration were greater in treatments with two grazer species compared to mixed grazer/insectivore or control treatments. The distribution of stream resources across habitat types and locations within a reach can therefore be influenced by the taxonomic and functional composition of fishes in small prairie streams. Thus, disturbances that alter diversity of these systems might have unexpected ecosystem‐level consequences.

Carbon cycling and exports over diel and flood-recovery timescales in a subtropical rainforest headwater stream

Catchment headwaters comprise the majority of all stream length globally, however, carbon (C) dynamics in these systems remains poorly understood. We combined continuous measurements of pCO2 and radon (222Rn, a natural groundwater tracer) with discrete sampling for particulate organic, dissolved organic and inorganic carbon (POC, DOC, and DIC) to assess the short-term carbon dynamics of a pristine subtropical headwater stream in Australia, over contrasting hydrologic regimes of drought, flash-flooding and recovery. Observations over 23days revealed a shift from carbon losses dominated by CO2 outgassing under conditions of low flow (66.4±0.4% of carbon export) to downstream exports of carbon during the flood (87.8±9.7% of carbon export). DOC was the dominant form of downstream exports throughout the study (DOC:DIC:POC=0.82:0.05:0.13). The broadest diel variability among variables occurred during the drought phase, with diel variability up to 662μatmd−1 (or 27μM[CO2*]d−1), 17μMd−1 and 268Bqm−3d−1 for pCO2, dissolved oxygen and 222Rn, respectively. Diel dynamics indicated multiple interrelated drivers of stream water chemistry including groundwater seepage and in-stream metabolism. The catchment exported terrestrial carbon throughout the field campaign, with a mean net stream flux of 4.7±7.8mmolCm−2(catchment area)d−1 which is equivalent to 1.4±2.3% of the estimated local terrestrial net primary production. Our observations highlight the importance of accounting for hydrological extremes when assessing the carbon budgets and ecosystem metabolism of headwater streams, and provide a first estimate of aquatic carbon exports from a pristine Australian subtropical rainforest.