In this paper, a Multi-Input Multi-Output (MIMO) high step-up transformerless DC-DC converter is proposed. The proposed converter can expand the number of ports from both input and output terminals. Also, it has a modular structure using voltage multiplier cells (a switch, two diodes, a capacitor, and an inductor). The proposed converter is useful for a wide range of applications and has the merit of interfacing multiple hybrid voltage sources with each other to supply different loads with various voltage levels. All the output voltages of the output ports can be regulated at the same time by tuning separate controlling parameters. Since digital control has the benefit of (1) enhancing efficiency, (2) higher flexibility than analog electronics, (3) ease of use, (4) improving reliability and stability in hybrid energy conversion applications, this method of controlling implementation is adopted. The key contributions of this article would be 1) expandable modular MIMO converter with high performance for all range of duty cycles; 2) integration of hybrid energy sources and delivering to multiple loads; 3) nonlinear digital controlling approach to achieve fast transient response under the variation of input voltage sources and output loads, and 4) high voltage gain with low normalized power stress on switches. To simplify the analysis, first, single-input, dual-output (SIDO) mother-module, dual-input, three-output (DITO) and three-input, four-output (TIFO) developed modules are carefully analyzed and then, the MIMO structure is explained. To verify the theoretical results, a prototype of SIDO operation of the proposed converter with a digital controlling scheme is implemented for 30V input voltage /150V, 250V output voltages with the total power of 450W. Furthermore, experimental results of DITO operation with 30V and 40V input voltages/150V, 250V, 405V output voltages with the total power of 800W are extracted.