Understanding the reaction kinetics, thermodynamics, and molecular mechanisms of liquid–liquid phase separation (LLPS) holds immense significance in unraveling the cell’s spatiotemporal coordination of metabolic pathways and has the potential to revolutionize diverse fields, including diagnostics and catalysis. However, the current scope of LLPS-based investigations is primarily limited to simplistic models with one or two-step reactions, failing to capture the complexity necessary for comprehending LLPS’s impact on intricate reactions and hindering its widespread practical applications. In this study, we address this limitation by constructing and screening a tailored LLPS system and utilizing complex nucleic acid amplification as a representative example. Our findings reveal a significant departure from the continuous acceleration observed in simple reactions, as the acceleration of complex reactions is highly dependent on the kinetics and reactant concentration of each specific reaction stage. Furthermore, by incorporating LLPS and its stage-specific factors, we demonstrate the development of an LLPS-based molecular diagnostic tool with a shortened detection time, higher efficiency and sensitivity compared to traditional methods. Therefore, this newfound understanding sheds light on the intricate characteristics of LLPS-mediated complex reactions and offers a breakthrough in diagnostic advancements by enabling faster and more accurate detection of target molecules, leveraging LLPS in diagnostic advancements, and driving the unlocking of further potential for LLPS utilization in various fields.
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