This study investigates the effects of the external magnetic field on the microstructure and mechanical property aluminum alloy 6061-T6 and 7075-T651 resistance spot welding joints. The melting behavior of 6061 and 7075 was analyzed via the calculation of the phase diagram (CALPHAD) technique. The CALPHAD results indicate that, for the 6061 aluminum alloy, the liquid fraction shows a minimal increase at the beginning stage during the solid–liquid phase transition process but with a sharp rise at the ending stage (near the liquidus). In contrast, for the 7075 aluminum alloy, the liquid fraction gradually increases throughout the entire solid–liquid phase transition process. The differences in melting behavior between the 6061 and 7075 alloys lead to different liquation crack morphologies in their spot-welded joints. In the 6061 alloy, the cracks tend to be “eyebrow-shaped”, allowing the liquid metal in the nugget to feed the gaps, and this does not significantly compromise the mechanical properties of the joint. In contrast, the 7075 alloy develops slender cracks that extend through the partially melted zone (PMZ), making it difficult for the liquid metal to feed these gaps, thereby significantly deteriorating the joint’s mechanical strength. Compared to conventional resistance spot-welding joints, the heat exchange between the nugget and the workpiece is enhanced under the external magnetic field, leading to a wider PMZ. This exacerbates the detrimental effects of liquation cracks on the mechanical properties of the 7075 joints. Lap-shear tests indicate that the mechanical properties of the 6061 aluminum alloy joints are improved under electromagnetic stirring. For 7075 aluminum alloy joints, the mechanical properties improve when the welding current is below 34 kA. However, when the welding current exceeds 34 kA, because the widening of the PMZ increases the tendency for liquation cracks, the joint’s mechanical property is deteriorated.