Resource Partitioning Research Articles

Collective intelligence facilitates emergent resource partitioning through frequency-dependent learning.

Deciding where to forage must not only account for variations in habitat quality but also where others might forage. Recent studies have suggested that when individuals remember recent foraging outcomes, negative frequency-dependent learning can allow them to avoid resources exploited by others (indirect competition). This process can drive the emergence of consistent differences in resource use (resource partitioning) at the population level. However, indirect cues of competition can be difficult for individuals to sense. Here, we propose that information pooling through collective decision-making-i.e. collective intelligence-can allow populations of group-living animals to more effectively partition resources relative to populations of solitary animals. We test this hypothesis by simulating (i) individuals preferring to forage where they were recently successful and (ii) cohesive groups that choose one resource using a majority rule. While solitary animals can partially avoid indirect competition through negative frequency-dependent learning, resource partitioning is more likely to emerge in populations of group-living animals. Populations of larger groups also better partition resources than populations of smaller groups, especially in environments with more choices. Our results give insight into the value of long- versus short-term memory, home range sizes and the evolution of specialization, optimal group sizes and territoriality. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'.

Understanding tissue-resident macrophages unlocks the potential for novel combinatorial strategies in breast cancer.

Tissue-resident macrophages (TRMs) are an integral part of the innate immune system, but their biology is not well understood in the context of cancer. Distinctive resident macrophage populations are identified in different organs in mice using fate mapping studies. They develop from the yolk sac and self-maintain themselves lifelong in specific tissular niches. Similarly, breast-resident macrophages are part of the mammary gland microenvironment. They reside in the breast adipose tissue stroma and close to the ductal epithelium and help in morphogenesis. In breast cancer, TRMs may promote disease progression and metastasis; however, precise mechanisms have not been elucidated. TRMs interact intimately with recruited macrophages, cytotoxic T cells, and other immune cells along with cancer cells, deciding further immunosuppressive or cytotoxic pathways. Moreover, triple-negative breast cancer (TNBC), which is generally associated with poor outcomes, can harbor specific TRM phenotypes. The influence of TRMs on adipose tissue stroma of the mammary gland also contributes to tumor progression. The complex crosstalk between TRMs with T cells, stroma, and breast cancer cells can establish a cascade of downstream events, understanding which can offer new insight for drug discovery and upcoming treatment choices. This review aims to acknowledge the previous research done in this regard while exploring existing research gaps and the future therapeutic potential of TRMs as a combination or single agent in breast cancer.

Functional traits and ecological niches as correlates of the interspecific growth–mortality trade‐off among seedlings of 14 tropical tree species

Abstract The interspecific trade‐off between growth versus mortality rates of tree species is thought to be driven by functional biology and to contribute to species ecological niche differentiation. Yet, functional trait variation is often not strongly correlated with growth and mortality, and few studies have investigated the relationships of both traits and niches, specifically encompassing above and belowground resources, to the trade‐off itself. These relationships are particularly relevant for seedlings, which must often survive resource limitation to reach larger size classes. We investigated the functional basis of the interspecific growth–mortality trade‐off and its relationship with ecological niches for seedlings of 14 tree species in a tropical forest in southwest China. We found evidence for an interspecific growth–mortality trade‐off at the seedling stage using 15 functional traits and 15 ecological niche variables. None of the organ‐level traits correlated with growth, mortality, nor the trade‐off, whereas specific stem length (SSL), a biomass allocation trait, was the only trait to have a significant correlation (positive). Moreover, light‐defined niches were not correlated with growth, mortality or the trade‐off, but soil‐defined niches did. Species at the faster growth/higher mortality end of the trade‐off were associated with higher fertility defined by lower soil bulk density and slope, and higher soil organic matter concentration and soil total nitrogen. Our findings indicate the importance of stem elongation and soil fertility for growth, mortality and their trade‐off at the seedling stage in this Asian tropical forest. Our findings contrast with analogous studies in neotropical forests showing the importance of photosynthesis‐related leaf traits related to insolation. Therefore, the functional drivers of demographic rates and trade‐offs, as well as their consequences for ecological niches, can vary among forests, likely owing to differences in biogeography, canopy disturbance rates, topography and soil properties. Moreover, the effects of functional trait variation on demographic rates and trade‐offs may be better revealed when biomass allocation is accounted for in a whole‐plant context. Read the free Plain Language Summary for this article on the Journal blog.

Variation in induced responses in volatile and non-volatile metabolites among six willow species: Do willow species share responses to herbivory?

Chemical variation is a critical aspect affecting performance among co-occurring plants. High chemical variation in metabolites with direct effects on insect herbivores supports chemical niche partitioning, and it can reduce the number of herbivores shared by co-occurring plant species. In contrast, low intraspecific variation in metabolites with indirect effects, such as induced volatile organic compounds (VOCs), may improve the attraction of specialist predators or parasitoids as they show high specificity to insect herbivores. We explored whether induced chemical variation following herbivory by various insect herbivores differs between VOCs vs. secondary non-volatile metabolites (non-VOCs) and salicinoids with direct effects on herbivores in six closely related willow species. Willow species identity explained most variation in VOCs (18.4%), secondary non-VOCs (41.1%) and salicinoids (60.7%). The variation explained by the independent effect of the herbivore treatment was higher in VOCs (2.8%) compared to secondary non-VOCs (0.5%) and salicinoids (0.5%). At the level of individual VOCs, willow species formed groups, as some responded similarly to the same herbivores. Most non-VOCs and salicinoids were upregulated by sap-suckers compared to other herbivore treatments and control across the willow species. In contrast, induced responses in non-VOCs and salicinoids to other herbivores largely differed between the willows. Our results suggest that induced responses broadly differ between various types of chemical defences, with VOCs and non-VOCs showing different levels of specificity and similarity across plant species. This may further contribute to flexible plant responses to herbivory and affect how closely related plants share or partition their chemical niches.

Spatiotemporal variations of plankton communities in different water bodies of the Yellow River: Structural characteristics, biogeographic patterns, environmental responses, and community assembly

Phytoplankton and zooplankton serve as critical indicators of aquatic ecological health, playing vital roles in nutrient cycling in aquatic ecosystems. Nevertheless, their biogeographic patterns and community assembly remain poorly understood, especially in large-scale watersheds. In this study, we collected plankton samples from typical reservoirs and river sections along the Yellow River during spring and summer to investigate their spatiotemporal dynamics, geographic patterns, and community assembly. Our results revealed that the diversity and composition of plankton communities varied with season significantly, showcasing higher diversity and density during summer. Distance-decay relationships highlighted significant correlations between environmental gradients and plankton community heterogeneity in both seasons, whereas spatial factors exerted a more prominent effect on phytoplankton during summer. Water temperature, dissolved oxygen, chemical oxygen demand, and total suspended sediments emerged as the main environmental attributes affecting plankton composition, as illustrated by Mantel’s test. Both ecological niche differentiation and dispersal limitation contributed to plankton community construction, with ecological niche differentiation being more dominant in spring and dispersal limitation more influential on phytoplankton in summer. These findings enhance our understanding of the structural characteristics of plankton communities in the large-scale Yellow River, shedding light on their biogeographic patterns and community construction mechanisms within large river ecosystems.

Niche differentiation in microorganisms capable of using alternative reduced nitrogen sources studied across depth and between oxic and anoxic ocean regions

IntroductionAssimilation of reduced nitrogen is less energetically costly than assimilation of oxidized forms. In the open ocean, ammonium is generally absent from the water column, including in oxygen-deficient zones (ODZs). Some microorganisms can use alternative organic reduced nitrogen forms like urea and cyanate, as indicated by the presence of cyanase (cynS) and urease (ureC) genes.MethodsHere we examine the Hawaii Ocean Time series, two stations in the Eastern Tropical South Pacific ODZ and one in the Eastern Tropical North Pacific ODZ, using phylogenetic read placement of metagenomic reads to define the proportion of each taxon capable of using cyanate and/or urea in oxic and anoxic environments.ResultsAn improved phylogenetic tree found that Thioglobaceae and Verrucomicrobia had the capability to use urea. Our detailed examination of all the microbial groups able to use cyanate and urea illuminated that niche differentiation, an adaptation to minimize competition, determines chosen nitrogen sources, partitioning by depth and oxygen. Urease genes were found in Picocyanobacteria and SAR11 in surface waters, Thaumarchaeota and Nitrospina in deep waters, Thioglobaceae and Cand. Scalindua in ODZs, and Verrucomicrobia in the deep oxycline. In the ODZs, the percentage of Anammox bacteria that contained cynS was double that of those containing ureC, and their cynS transcripts were abundant, indicating a preference for cyanate over urea.DiscussionWhile Prochlorococcus could utilize cyanate in the deep chlorophyll maximum, in the ODZs, Prochlorococcus uses nitrite rather than compete with Cand. Scalindua for cyanate, even though cyanate is present. SAR11 and Prochlorococcus may compete for urea in surface waters, but for SAR11, the presence of ureC was negatively correlated with nitrate concentration (p = 10−17), with ~ 40% of SAR11 genomes containing the ureC gene in oxic surface waters but none at depth, indicating that SAR11 bacteria switched to using nitrate when available. In the oxycline above the ODZ, where Thaumarchaeota and Nitrospina both could use urea, 50% of Nitrospina were also able to use cyanate, and their cyanase transcripts were present. This use of dissolved organic N should allow a higher biomass of N-cycling microbes and higher N-transformation rates than in a system competing for ammonia only.

Biogeographical distribution and community assembly of Myxococcota in mangrove sediments

BackgroundMyxococcota, characterized by their distinct social lifestyles, are widely distributed micro-predators in global sediments. They can feed on a wide range of bacterial, archaeal, and fungal prey. Myxococcota are capable of producing diverse secondary metabolites, playing key roles in microbial food webs, and regulating the microbial community structures in different ecosystems. However, Myxococcota are rarely pure cultured due to the challenging and stringent culturing conditions. Their natural distribution, niche differentiation, and predator–prey relationships in a specific habitat are poorly understood.ResultsIn this study, we conducted a comprehensive analysis of the 16S rRNA gene sequence data from public databases and our collection. We compared the abundance, diversity, and distribution patterns of Myxococcota in various habitats, with a specific focus on mangroves. We found that Myxococcota accounted for 1.45% of the total prokaryotes in global sediments based on the abundance of 16S rRNA genes. Myxococcota are abundant and diverse in mangrove sediments. They tend to be more generalistic in mangroves than in other habitats due to their wide niche breadth. Besides, the deterministic processes (variable selection) influenced the assembly of mangrove Myxococcota communities significantly more than stochastic processes. Further, we determined that environmental factors explained a greater amount of total community variation in mangrove Myxococcota than geographical variables (latitude and sediment depth). In the end, through the analysis of microbial co-occurrence networks, Myxococcota emerges as a key component and functions as a connector in the mangrove microbial community.ConclusionsOur study enhances comprehension of mangrove Myxococcota's biogeography, assembly patterns, driving factors, and co-occurrence relationships, as well as highlights their unique niche and ecological importance in mangrove sediments.

Deep metagenomic sequencing unveils novel SAR202 lineages and their vertical adaptation in the ocean

SAR202 bacteria in the Chloroflexota phylum are abundant and widely distributed in the ocean. Their genome coding capacities indicate their potential roles in degrading complex and recalcitrant organic compounds in the ocean. However, our understanding of their genomic diversity, vertical distribution, and depth-related metabolisms is still limited by the number of assembled SAR202 genomes. In this study, we apply deep metagenomic sequencing (180 Gb per sample) to investigate microbial communities collected from six representative depths at the Bermuda Atlantic Time Series (BATS) station. We obtain 173 SAR202 metagenome-assembled genomes (MAGs). Intriguingly, 154 new species and 104 new genera are found based on these 173 SAR202 genomes. We add 12 new subgroups to the current SAR202 lineages. The vertical distribution of 20 SAR202 subgroups shows their niche partitioning in the euphotic, mesopelagic, and bathypelagic oceans, respectively. Deep-ocean SAR202 bacteria contain more genes and exhibit more metabolic potential for degrading complex organic substrates than those from the euphotic zone. With deep metagenomic sequencing, we uncover many new lineages of SAR202 bacteria and their potential functions which greatly deepen our understanding of their diversity, vertical profile, and contribution to the ocean’s carbon cycling, especially in the deep ocean.

Substrate complexity buffers negative interactions in a synthetic community of leaf litter degraders.

Leaf litter microbes collectively degrade plant polysaccharides, influencing land-atmosphere carbon exchange. An open question is how substrate complexity-defined as the structure of the saccharide and the amount of external processing by extracellular enzymes-influences species interactions. We tested the hypothesis that monosaccharides (i.e. xylose) promote negative interactions through resource competition, and polysaccharides (i.e. xylan) promote neutral or positive interactions through resource partitioning or synergism among extracellular enzymes. We assembled a three-species community of leaf litter-degrading bacteria isolated from a grassland site in Southern California. In the polysaccharide xylan, pairs of species stably coexisted and grew equally in coculture and in monoculture. Conversely, in the monosaccharide xylose, competitive exclusion and negative interactions prevailed. These pairwise dynamics remained consistent in a three-species community: all three species coexisted in xylan, while only two species coexisted in xylose, with one species capable of using peptone. A mathematical model showed that in xylose these dynamics could be explained by resource competition. Instead, the model could not predict the coexistence patterns in xylan, suggesting other interactions exist during biopolymer degradation. Overall, our study shows that substrate complexity influences species interactions and patterns of coexistence in a synthetic microbial community of leaf litter degraders.

Niche separation of three species of tree-rat (black-footed tree-rat, M. gouldii, golden-backed tree-rat, Mesembriomys macrurus, and brush-tailed rabbit-rat, Conilurus penicillatus) on the Mitchell Plateau, Western Australia

Context Distribution and abundance of the three northern Australian tree-rat species, Conilurus penicillatus, Mesembriomys macrurus and M. gouldii, have contracted significantly since European settlement. All three species were recorded from the Mitchell Plateau, Western Australia, in the 1980s, enabling their niche separation to be assessed. Despite this study being conducted in 1987, the results remain relevant for conservation strategies for these species. Aims To determine the ecological separation among three tropical tree-rat species by documenting habitat preferences, habitat use and diet. Methods Live-trapping, radiotracking and spotlighting were used to assess relative abundance, habitat preference and movements of each species at nine sites on the Mitchell Plateau. Diet was determined using scat analysis; vegetation communities were described and characterised by pattern analysis. Key results C. penicillatus (number of individuals trapped (n) = 24) was most abundant, followed by M. macrurus (n = 8) and M. gouldii (n = 2). Mature open forest with a well-developed understorey was preferred by the predominantly arboreal M. gouldii (1 site), M. macrurus occupied more varied habitats (four sites), especially ecotones between vine thicket and open eucalypt forest and the boulder edges of the plateau, and C. penicillatus occupied the greatest variety of habitats (four sites) in open eucalypt woodland with a diverse shrub layer and ground cover almost absent to very dense, tall grass. Diet analysis identified M. gouldii as a frugivore (fruits, some flowers), M. macrurus as an omnivore (seeds, fruits, flowers, termites, other invertebrates), and C. penicillatus as a generalist (monocot and dicot leaves, seeds, flowers, fruits, some arthropods). Conclusions The largest of the species, M. gouldii, appeared to have the narrowest ecological niche, preferring more stable, structurally diverse, mature open forest that is infrequently burnt. The mid-sized M. macrurus occupies a broader range of habitats, particularly ecotones between vine thickets and eucalypt forest/woodland and woodland. C. penicillatus preferred open eucalypt woodland with a variable understorey. Implications With a changing climate, increased fire frequency, habitat degradation by introduced herbivores and predation by cats across the tropical savanna distribution of these threatened tree-rats, this study provides data to underpin actions that may ensure their survival.

Home on the range: A multi-isotope investigation of ungulate resource partitioning at Ashfall Fossil Beds, Nebraska, USA

During the Miocene (ca. 23.0–5.3 Ma), North America's Great Plains were a broad mosaic of savanna-woodlands inhabited by a diverse ungulate fauna. We investigated resource partitioning among ungulates at Ashfall Fossil Beds State Historical Park (henceforth “Ashfall”) in north-central Nebraska to establish how taxa shared the landscape. This mid-Miocene (11.86 ± 0.13 Ma) site preserves a watering-hole filled with volcanic ash that entombed hundreds of skeletons of medium- and large-bodied ungulates. We analyzed carbon (δ13C), oxygen (δ18O), and strontium (87Sr/86Sr) isotopes in enamel from seven species: the rhinoceros Teleoceras major (n = 13); three horses (Cormohipparion occidentale, Pliohippus pernix, and Pseudhipparion gratum; n = 3 each); two camels (Procamelus grandis and Protolabis heterodontus; n = 1 each); and one small ruminant artiodactyl (Longirostromeryx wellsi; n = 3). Carbon isotope data indicate that all seven ungulates foraged in open habitats dominated by C3 plants (enamel δ13CVPDB range from −9.6‰ to −6.9‰) with little to no evidence of C4 plant consumption. The overall range in δ18OVPDB values is ca. 6‰ (−7.6‰ to −1.3‰), while the range for 87Sr/86Sr is narrow (0.70864–0.70898). Horses have significantly higher δ18O and 87Sr/86Sr than T. major, which we suggest indicates horses foraged in relatively dry habitats, while T. major inhabited wet habitats with different strontium sources. Both camels isotopically resemble horses, and Longirostromeryx wellsi has intermediate 87Sr/86Sr and wide-ranging δ18O values. Plotting Teleoceras and co-occurring ungulates in a model that tests for semi-aquatic behavior using δ18O suggests that T. major from Ashfall was semi-aquatic; ecology and behavior may have varied among Teleoceras species living in different places at different times. This study exemplifies how 87Sr/86Sr data complement δ13C and δ18O analyses when reconstructing ancient environments; they can provide nuanced ecological information even in landscapes with homogeneous bedrock.

Weather patterns determine success rates of two biocontrol agents on Cytisus scoparius in the USA

AbstractTo be effective, a biocontrol agent must survive and persist in the same habitat as the target species and reduce target population growth. When multiple biocontrol agents are used against a single invasive species, they may each perform better under a subset of the habitat in which the target lives. This complementarity allows for a more consistent level of control and a higher resilience to environmental variability. Two species that feed on the same plant tissues would compete, but niche partitioning in the native range may be replicated when both species are introduced to the invasive range. When biocontrol agents are released, they may self‐sort to perform best in their respective niches. We hypothesized that two biocontrol agents—Scotch broom seed beetle, Bruchidius villosus (Fabricius) (Coleoptera: Chrysomelidae) and Scotch broom seed weevil, Exapion fuscirostre (Fabricius) (Coleoptera: Brentidae)—that both feed on seeds of the invasive legume Scotch broom, Cytisus scoparius L. Link (Fabaceae), would be impacted differently by different weather conditions and plant traits, and would show different success rates at field sites with different conditions. We used a 5‐year study to reveal that the two biocontrol agents are not uniformly distributed in the field and that weather and plant factors influence their success. We confirmed that weather conditions of the previous year influenced biocontrol agent attack rate and found that weather patterns at a field site may predict the impact of each biocontrol agent.

Deciphering Pteronia's evolution in the Cape Floristic Region: A comprehensive study disputes polyploid deficiency and affirms diploid radiation.

The Greater Cape Floristic Region (GCFR) is renowned for its exceptional biodiversity, accommodating over 11 000 plant species, notable degree of endemism, and substantial diversification within limited plant lineages, a phenomenon ascribed to historical radiation events. While both abiotic and biotic factors contribute to this diversification, comprehensive genomic alterations, recognized as pivotal in the diversification of angiosperms, are perceived as uncommon. This investigation focuses on the genus Pteronia, a prominent representative of the Asteraceae family in the GCFR. Employing NGS-based HybSeq and RADSeq methodologies, flow cytometry, karyology, and ecological modeling, we scrutinize the intricacies of its polyploid evolution. Phylogenetic reconstructions using 951 low-copy nuclear genes confirm Pteronia as a well-supported, distinct clade within the tribe Astereae. The ingroup displays a structure indicative of rapid radiation likely antedating polyploid establishment, with the two main groups demarcated by their presence or absence in the fynbos biome. Genome size analysis encompasses 1293 individuals across 347 populations, elucidating significant variation ranging from 6.1 to 34.2 pg (2C-value). Pteronia demonstrates substantially large genome sizes within Astereae and phanerophytes. Polyploidy is identified in 31% of the studied species, with four discerned ploidy levels (2x, 4x, 6x, 8x). Cytotypes exhibit marked distinctions in environmental traits, influencing their distribution across biomes and augmenting their niche differentiation. These revelations challenge the presumed scarcity of polyploidy in the Cape flora, underscoring the imperative need for detailed population studies. The intricate evolutionary history of Pteronia, characterized by recent polyploidy and genome size variation, contributes substantially to the comprehension of diversification patterns within the GCFR biodiversity hotspot.

The ecological traits of birds in the context of future changes of their ranges under the impact of global climate change

Over the next 70 years, the average annual temperature in Europe is projected to increase by 4.1 °C. In Zhytomyr Oblast, this figure is likely to increase by 4.4 °C. The amount of precipitation in Europe is expected to increase by an average of 60.3 mm per year, with Zhytomyr Oblast experiencing an 87.2 mm per year increase in precipitation compared to the current state. As a consequence of the global climate change, the habitat-preference index will decline for 159 species (60.1%), remain virtually unchanged for 20 species (7.6%), and improve for 83 species (31.7%). The primary factors influencing the differentiation of avian ecological niches by climate regimes are thermal gradient, precipitation gradient, and temporal variability of precipitation throughout the year. With regard to the landscape aspect, bird species can be differentiated according to their campophi­lous/dendrophilous characteristics, their water-intensive/rural or urban/rural tendencies. Soil conditions are a determining factor in the landscape aspect of ecological niches. As a consequence of the global climate change, the habitat preference index will increase for species that are more thermophilic and prefer conditions with higher precipitation. According to predictions, over the coming 70 years, the number of campophilous birds will increase as compared to dendrophilous birds as a result of the global warming. Moisture-loving campophiles will be outcompeted by rural species, and rural species will be outcompeted by urban species. In response to the climate change, populations of bird species are shifting their geographical ranges to regions with suitable climatic conditions. The knowledge of the characteristics of ecological niches is the foundation for anticipating alterations in species distributions in response to global climate change in the future. The estimation of niche parameters is contingent upon the model employed to fit the observed data. The beta model is a flexible and versatile tool that enables comparisons to be made between species complexes. The thermal projection of ecological niche was employed to categorise bird species into ecological groups based on the position of the optimum zone and the width of tolerance amplitude. Ecological groups differ in their prospects in the context of global climate change. It can be predicted that the trends of stenotopic megatherms will improve, whereas those of all other bird species will deteriorate. The most pessimistic scenario is expected for stenotopic microtherms. The analysis of the ecological properties of birds in the region identified 10 functional axes, three of which correlate with the sensitivity of bird species to the global climate change. The prediction of impact of landscape factors on species distribution is challenging. However, the structure of the functional axes allows us to identify which ecological niche parameters, determined by landscape conditions, are more sensitive to birds. Functional axes 1 and 6 indicate a positive trend in urban bird life in the context of global climate change. It is anticipated that positive prospects will emerge in connection with the global climate change for birds belonging to the families Anseriformes, Podicipediformes, Gruiformes, Charadriiformes, Gaviiformes, and Pelecaniformes. Conversely, negative prospects are expected for forest birds (Columbiformes, Strigiformes, Piciformes) and birds of forest and open spaces (Falconiformes). The functional axis 1 correlated with bird weight. A positive correlation between bird weight and the predicted change in the habitat-preference index over the next 70 years was identified exclusively for species belonging to Charadriiformes. The positive effect of weight on the probability of habitat improvement within Charadriiformes can be attributed to the fact that rurally occurring species within this order are usually heavier than those in natural ecosystems, and those in urban habitats are heavier than those in rural habitats. Functional Axis 4 identifies the group of urban birds whose habitat conditions are likely to deteriorate in the near future due to global warming. This group includes woodpeckers, which can be considered an indicator of the biodiversity of bird communities that are sensitive to the global climate change.

Linking the composition of cryoconite prokaryotic communities in the Arctic, Antarctic, and Central Caucasus with their chemical characteristics

Cryoconites are the deposits on the surface of glaciers that create specific ecological niches for the development of microorganism communities. The sediment material can vary in origin, structure, and nutrient content, creating local variations in the growth conditions. An additional factor of variability is the location of the glaciers, as they are found in different climatic zones in the high mountain regions and closer to the poles. Here, using the analysis of amplicon sequencing of the 16S rRNA gene, we studied the taxonomic composition of the prokaryotic communities from glaciers from remote regions, including the Arctic (Mushketova on the Severnaya Zemlya, IGAN in Polar Ural), Antarctic (Pimpirev on the Livingstone Island) and Central Caucasus (Skhelda and Garabashi) and connected it with the variation of the physicochemical characteristics of the substrate: pH, carbon, nitrogen, macro- and microelements. The cryoconite microbiomes were comprised of specific for this environment phyla (mostly Pseudomonadota, Cyanobacteria, Bacteroidota, Acidobacteriota, and Actinobacteriota), but each glacier had a unique taxonomic imprint. The core microbiome between regions was composed of only a few ASVs, among which the most likely globally distributed ones attributed to Polaromonas sp., Rhodoferax sp., Cryobacterium sp., and Hymenobacter frigidus. The WGSNA defined clusters of co-occurring ASVs between microbiomes, that significantly change their abundance corresponding with the variation of chemical parameters of cryoconites, but do not fully coincide with their regional separation. Thus, our work demonstrates that the chemical characteristics of the sediment material can explain the variation in the cryoconite prokaryotic community which is not always linked to geographic isolation.

Desert plants, arbuscular mycorrhizal fungi and associated bacteria: Exploring the diversity and role of symbiosis under drought.

Desert plants, such as Agave tequilana, A. salmiana and Myrtillocactus geometrizans, can survive harsh environmental conditions partly due to their symbiotic relationships with microorganisms, including arbuscular mycorrhizal fungi (AMF). Interestingly, some of these fungi also harbour endosymbiotic bacteria. Our research focused on investigating the diversity of these AMFs and their associated bacteria in these plants growing in arid soil. We found that agaves have a threefold higher AMF colonization than M. geometrizans. Metabarcoding techniques revealed that the composition of AMF communities was primarily influenced by the plant host, while the bacterial communities were more affected by the specific plant compartment or niche they inhabited. We identified both known and novel endofungal bacterial taxa, including Burkholderiales, and confirmed their presence within AMF spores using multiphoton microscopy. Our study also explored the effects of drought on the symbiosis between A. tequilana and AMF. We discovered that the severity of drought conditions could modulate the strength of this symbiosis and its outcomes for the plant holobiont. Severe drought conditions prevented the formation of this symbiosis, while moderate drought conditions promoted it, thereby conferring drought tolerance in A. tequilana. This research sheds light on the diversity of AMF and associated bacteria in Crassulacean Acid Metabolism (CAM) plants and underscores the crucial role of drought as a factor modulating the symbiosis between A. tequilana and AMF. Further research is needed to understand the role of endofungal bacteria in this response.

Biogeographic patterns of Pacific white‐sided dolphins based on long‐term passive acoustic records

AbstractAimThis study investigates the biogeographic patterns of Pacific white‐sided dolphins (Lagenorhynchus obliquidens) in the Eastern North Pacific based on long‐term passive acoustic records. We aim to elucidate the ecological and behavioural significance of distinct echolocation click types and their implications for population delineation, geographic distribution, environmental adaptation and management.LocationEastern North Pacific Ocean.Time Period2005–2021.Major Taxa StudiedPacific white‐sided dolphin.MethodsOver 50 cumulative years of passive acoustic monitoring (PAM) data from 14 locations were analyzed using a deep neural network to classify two distinct Pacific white‐sided dolphin echolocation click types. The study assessed spatial, diel, seasonal and interannual patterns of the two click types, correlating them with major environmental drivers such as the El Niño Southern Oscillation and the North Pacific Gyre Oscillation, and modeling long‐term spatial‐seasonal patterns.ResultsDistinct spatial, diel and seasonal patterns were observed for each click type. Significant biogeographical shifts in presence were observed following the 2014–2016 marine heatwave event.Main ConclusionsDistinct spatial distributions of the two click types support the hypothesis that Pacific white‐sided dolphins produce population‐specific echolocation clicks. Seasonal and diel patterns suggest spatiotemporal niche partitioning between the populations in Southern California. Interannual changes, notably initiated during the 2014–2016 marine heatwave, indicate climate‐driven range expansions and contractions related to gradual tropicalization of the Southern California Bight.

Intensified anthropogenic disturbances impair planktonic algae in an urban river

Anthropogenic activities have posed significant threats to water quality and aquatic organisms in urban rivers, yet the understanding of how planktonic and sedimentary algal communities respond to different levels of anthropogenic disturbances remains limited. To address this knowledge gap, we conducted a systematic investigation on the effects of three anthropogenic-disturbance levels (i.e., low in the upstream, moderate in the midstream, and high in the downstream reach) on algal communities in water and sediment of the Bahe River. Our results revealed that planktonic rather than sedimentary algae were more vulnerable to anthropogenic activities in the urban river. Notably, we found the lowest biodiversity and niche breadth of planktonic algae in the downstream subjected to the high anthropogenic stress. Furthermore, the lowest complexity and stability of co-occurrence patterns of planktonic algae as well as planktonic algae-bacteria were witnessed under the highest human disturbance. Anthropogenic activities, followed by physicochemical variables, geographical patterns, and bacteria co-occurring with algae, played essential roles in shaping the niche differentiation and community assembly of planktonic algae. This study suggested that anthropogenic disturbances (represented by nighttime light, gross domestic product, and impervious surface) can alter physiochemical conditions (such as nitrogen and phosphorus contents) and thereby damage algal compositions along the urban river, highlighting the importance of effective measures for mitigating the impacts of anthropogenic activities and protecting the ecological health of river systems.

Salt-tolerant plant growth-promoting bacteria as a versatiletool for combating salt stress in crop plants.

Soil salinization poses a great threat to global agricultural ecosystems, and finding ways to improve the soils affected by salt and maintain soil health and sustainable productivity has become a major challenge. Various physical, chemical and biological approaches are being evaluated to address this escalating environmental issue. Among them, fully utilizing salt-tolerant plant growth-promoting bacteria (PGPB) has been labeled as a potential strategy to alleviate salt stress, since they can not only adapt well to saline soil environments but also enhance soil fertility and plant development under saline conditions. In the last few years, an increasing number of salt-tolerant PGPB have been excavated from specific ecological niches, and various mechanisms mediated by such bacterial strains, including but not limited to siderophore production, nitrogen fixation, enhanced nutrient availability, and phytohormone modulation, have been intensively studied to develop microbial inoculants in agriculture. This review outlines the positive impacts and growth-promoting mechanisms of a variety of salt-tolerant PGPB and opens up new avenues to commercialize cultivable microbes and reduce the detrimental impacts of salt stress on plant growth. Furthermore, considering the practical limitations of salt-tolerant PGPB in the implementation and potential integration of advanced biological techniques in salt-tolerant PGPB to enhance their effectiveness in promoting sustainable agriculture under salt stress are also accentuated.

Early rhombic lip Protogenin+ve stem cells in a human-specific neurovascular niche initiate and maintain group 3 medulloblastoma

We identify a population of Protogenin-positive (PRTG+ve) MYChigh NESTINlow stem cells in the four-week-old human embryonic hindbrain that subsequently localizes to the ventricular zone of the rhombic lip (RLVZ). Oncogenic transformation of early Prtg+ve rhombic lip stem cells initiates group 3 medulloblastoma (Gr3-MB)-like tumors. PRTG+ve stem cells grow adjacent to a human-specific interposed vascular plexus in the RLVZ, a phenotype that is recapitulated in Gr3-MB but not in other types of medulloblastoma. Co-culture of Gr3-MB with endothelial cells promotes tumor stem cell growth, with the endothelial cells adopting an immature phenotype. Targeting the PRTGhigh compartment of Gr3-MB invivo using either the diphtheria toxin system or chimeric antigen receptor Tcells constitutes effective therapy. Human Gr3-MBs likely arise from early embryonic RLVZ PRTG+ve stem cells inhabiting a specific perivascular niche. Targeting the PRTGhigh compartment and/or the perivascular niche represents an approach to treat children with Gr3-MB.