Species In Landscapes Research Articles

Agroindustrial landscapes and white-lipped peccary habitat use in the Cerrado of Brazil

The conversion of natural areas into agricultural land has increased human-wildlife interactions, often resulting in crop damage. This study focuses on the white-lipped peccary (Tayassu pecari), which thrives in landscapes where well-preserved, naturally-vegetated public and private lands are juxtaposed with agricultural fields. We investigated the habitat use and selection of four herds of white-lipped peccaries in a landscape mosaic along the southern border of Emas National Park in the Cerrado biome of Brazil. Our findings reveal that white-lipped peccaries prefer both corn plantations and gallery forests as habitats. Through high-frequency GPS telemetry, we observed a strong tendency to turn when herds were in agricultural areas and gallery forests, indicating feeding behavior. On the other hand, they typically move in straight lines for long distances when traversing bare soil fields and native Cerrado vegetation, suggesting they are merely passing through these habitats. The extensive feeding on corn crops in agricultural fields has resulted in significant financial losses for producers, leading to a conflict between white-lipped peccaries and landowners. Understanding the movement dynamics of the species and their intensive use of both private and public lands can aid in the development of management strategies that minimize or eliminate crop losses while ensuring the survival of this vulnerable species in landscapes comprising agricultural fields and native habitats.

The Effects of Anthropogenic Disturbances on the Spatiotemporal Patterns of Medium-Large Mammals in Tropical Volcanic Landscapes.

A comprehensive understanding of the consequences of human interactions with mammals is a critical factor in supporting and conserving species in landscapes dominated by humans, which are increasingly threatened. This study aimed to identify the spatial and temporal interactions between humans and mammals. A non-parametric statistical approach with kernel density was used to detect human-mammal temporal interactions. The species interaction factor (SIF) was applied to calculate the spatial overlap based on the two-species occupancy detection model. The activity patterns of medium mammals were nocturnal, diurnal, and cathemeral. The human-medium mammal pairs with SIF values that were <1 and statistically significant included the human-long-tailed macaque (Macaca fascicularis) pair, the human-leopard cat (Prionailurus bengalensis) pair, and the human-barking deer (Muntiacus muntjac) pair. Based on their SIF values and the high overlap in their activity times, the human-macaque pairings had a high risk of conflict. Barking deer and leopard cats displayed a coexistence with humans via time-sharing activities. Due to temporal niche variations with human activities, the existence of nocturnal mammals was relatively uninterrupted. This study showed that most mammals are able to adapt spatially and temporally to various human activities. Nonetheless, efforts to mitigate human-wildlife conflict must be maintained, particularly in the case of severely endangered species, such as the Sunda pangolin.

Ranging ecology and resource selection of white-lipped peccaries (Tayassu pecari) in the world's largest tropical agricultural frontier.

Agricultural commodity production is one the main drivers of deforestation in Legal Brazilian Amazonia resulting in a deforested and/or fragmented landscape formed by forest remnants of different sizes and shape embedded within the agricultural matrix. As an ecosystem engineer and a crucial seed predator, white-lipped peccaries (Tayassu pecari) play a pivotal role in forest structure, biodiversity, and nutrient cycling. However, they are highly sensitive to habitat fragmentation and hunting pressure. White-lipped peccaries are, therefore, a wide-ranging "landscape species," the spatial and ecological requirements of which can be used to guide conservation planning in human-modified landscapes. Using data from GPS-tracked individuals in large-scale mechanized agriculture landscapes in the state of Mato Grosso, Brazil's largest soybean and maize producer, we investiated the home range size and resource selection during both the crop and non-crop season. We observed a seasonal variation in home range size and an increased selection for croplands during the crop season. White-lipped peccaries favored native vegetation patches and also exhibited avoidance of locations distant from perennial water bodies and distant cropland locations far from forest remmants. This study can contribute to inform effective conservation strategies and land management practices aimed at preserving suitable habitats and promoting wildlife coexistence with working agricultural landscapes.

The protection of ash trees against ash dieback by tree injections

Ash dieback caused by a non-native pathogenic fungus Hymenoscyphus fraxineus has been decimating populations of European Fraxinus species for over 30 years. Nevertheless, there is still a considerable amount of valuable ashes of this species in European cities and landscapes. Although it has been shown in many studies that the effect of H. fraxineus on adult and senescent trees tends to be rather chronic, the infection by this fungus also causes a substantial decrease in the lifespan of these trees. This research is dealing with the control of ashes using the tree injection technology. It is focused on the development of bark necroses, as this symptom results in the highest damage to a tree. Trees were first inoculated with two different strains of H. fraxineus. Trees with proven positive inoculation were injected with six different fungicides. Subsequently, over the course of nine months, the area of developing bark necroses was measured using image analysis methods. After the field part of the experiment was finished, the extent of the infection by H. fraxineus in tissues was determined and confirmed by PCR. Three out of six tested variants (Tr. 1: 7.1% propiconazole, Tr. 3: 7% propamocarb and 2.7% fosetyl, and Tr. 6: 0.015% sodium selenite) displayed significant deceleration of the growth of bark necroses compared to control. Tr. 3 demonstrated the highest effectiveness with only a very small increment of the necrosis area during the first three months after the injection treatment and a follow-up complete cessation of growth. Reisolations confirmed high mortality of H. fraxineus after this treatment. Hence the presented study can contribute to substantial prolongation of the lifespan of ashes in Europe.

Distribution of the northern pampas cat, Leopardus garleppi, in northern South America, confirmation of its presence in Colombia and genetic analysis of a controversial record from the country

Abstract The common name of pampas cat includes a complex of small Neotropical felid species found in various habitats of South America. Recently several species of this complex were proposed, but there are few records in the northernmost distribution of the continent, and reports of the pampas cat’s presence in Colombia have been ambiguous. Current northern limits of Leopardus garleppi are limited to the Andes of Ecuador. Here we present the northernmost record of the species, validating its presence in Colombia and review previous controversial records from the country. The new record is based on a road-killed specimen in a dry tropical forest ecosystem in the municipality of Mercaderes, Department of Cauca. Our morphological and genetic comparisons also shown that a previous record from Colombia supported by a single skin recently used to described a new species named Leopardus narinensis belong to Leopardus tigrinus. With the information compiled from new localities in Colombia and Ecuador, the known distribution range for L. garleppi is increased towards the northern part of South America into areas of Tropical Dry Forest. The distribution now includes 14 ecoregions from Colombia to Bolivia, and four in Colombia (Eastern Cordillera real montane forests, Northwestern Andean montane forests, Northern Andean paramo, and the Patía Valley dry forests), which correspond to similar ecosystems inhabited by the species in other Andean landscapes. The potential distribution hypothesis showed that the species has high suitability in large areas of southwestern Colombia (Nariño). With the recording of L. garleppi in Colombia, the number of extant felid species in the country has increased to seven.

Distribution of grouse and their predators in peatland forest landscapes: A case for ecological integrity

Natural peatland forest landscapes have been transformed and fragmented by forestry and agriculture worldwide, which undermines their ecological functioning and resilience. In Northern Europe, such transformations are apparently linked with observed long-term declines of forest dwelling grouse; those declines have not been effectively addressed by conservation. We asked how site factors, in combination with forest management and predation risk, shape grouse distributions in such landscapes in the breeding season. The data were collected by single-visit snapshot mapping of the capercaillie (Tetrao urogallus), black grouse (Lyrurus tetrix), hazel grouse (Tetrastes bonasia), and the signs of their potential predators across seven peatland forest areas (156 km2 in total) around large bogs in Estonia. We modelled the presence of grouse species in relation to landscape gradients, forest stand characteristics, and predator occurrence. The species were partly segregated along the bog-fen forest gradient (on different types of peat soils) and by stand composition; most capercaillie hens dispersed up to 2.5 km from lekking sites. All species avoided recently thinned forests, except breeding capercaillie in transitional mire sites (their preferred habitat). When the other factors were accounted for, the grouse neither avoided densely ditched areas nor predator vicinity at a forest scale (ca. 20-ha), which may expose the birds to unperceived risks. Our results indicate that conserving all three grouse species in peatland forest landscapes requires maintaining the edaphic and stand-structural diversity of the forests. Frequent thinning and dense predator populations are detrimental, and may require large refuge habitats to buffer their influence. Sustaining viable grouse populations serves as a clear target for ecosystem management in drained peatland landscapes.

Intraspecific trait variability facilitates tree species persistence along riparian forest edges in Southern Amazonia

Tropical forest fragmentation from agricultural expansion alters the microclimatic conditions of the remaining forests, with effects on vegetation structure and function. However, little is known about how the functional trait variability within and among tree species in fragmented landscapes influence and facilitate species’ persistence in these new environmental conditions. Here, we assessed potential changes in tree species’ functional traits in riparian forests within six riparian forests in cropland catchments (Cropland) and four riparian forests in forested catchments (Forest) in southern Amazonia. We sampled 12 common functional traits of 123 species across all sites: 64 common to both croplands and forests, 33 restricted to croplands, and 26 restricted to forests. We found that forest-restricted species had leaves that were thinner, larger, and with higher phosphorus (P) content, compared to cropland-restricted ones. Tree species common to both environments showed higher intraspecific variability in functional traits, with leaf thickness and leaf P concentration varying the most. Species turnover contributed more to differences between forest and cropland environments only for the stem-specific density trait. We conclude that the intraspecific variability of functional traits (leaf thickness, leaf P, and specific leaf area) facilitates species persistence in riparian forests occurring within catchments cleared for agricultural expansion in Amazonia.

Plant species diversity, plant use, and classification of agroforestry homegardens in southern and southwestern Ethiopia

The attainment of ever more sustainable agricultural production and reconciling agriculture with conservation are the main challenges that human beings are confronted with head-on in the future. Through expanding and enhancing agroforestry homegardens at the agricultural landscape level, biodiversity can be increased and maintained while addressing several utility values, ensuring both ecological and socioeconomic sustainability. This study was conducted in agroforestry homegardens of southern and southwestern Ethiopia, to examine plant species richness and other diversity indices, plant use, and classify and identify different types of homegardens based on their species composition and abundance. In total, 93 homegarden owners participated in the study. Two hundred and six (mean 15.44 per homegarden) different plant species (excluding weeds) that belonged to 161 genera and 66 plant families were identified across the studied sites. Fifteen species (about 7.28% of all species recorded) are endemic and threatened to Ethiopia. The overall mean plant species richness per agroforestry homegardens, mean individual density and other diversity parameters varied strongly among sites (P < 0.05). In all of the agroforestry homegardens, roots, and tubers food producing plant species tended to be more dominant (based on summed dominance ratio, SDR) than other species, except the cereal crops barley and maize. Based on cluster analysis, four groups of agroforestry homegardens were identified including, ‘small-sized, low plant diversity, barley-potato-enset-apple homegardens (Cluster-1)’; ‘intermediate-sized, taro-enset-coffee homegardens (Cluster-2)’; ‘large-sized, maize-taro-sweet potato-teff-enset homegardens (Cluster-3)’; and ‘small-sized, high plant diversity with mixed-use category homegardens (Cluster-4)’. The results also indicate that agroforestry homegardens as ecological niches are valuable for the conservation and maintenance of biological diversity both for crop genetic as well as forest tree resources, including harboring of endemic and threatened species in those human-dominated landscapes.

Capturing long‐tailed individual tree diversity using an airborne imaging and a multi‐temporal hierarchical model

AbstractMeasuring forest biodiversity using terrestrial surveys is expensive and can only capture common species abundance in large heterogeneous landscapes. In contrast, combining airborne imagery with computer vision can generate individual tree data at the scales of hundreds of thousands of trees. To train computer vision models, ground‐based species labels are combined with airborne reflectance data. Due to the difficulty of finding rare species in a large landscape, many classification models only include the most abundant species, leading to biased predictions at broad scales. For example, if only common species are used to train the model, this assumes that these samples are representative across the entire landscape. Extending classification models to include rare species requires targeted data collection and algorithmic improvements to overcome large data imbalances between dominant and rare taxa. We use a targeted sampling workflow to the Ordway Swisher Biological Station within the US National Ecological Observatory Network (NEON), where traditional forestry plots had identified six canopy tree species with more than 10 individuals at the site. Combining iterative model development with rare species sampling, we extend a training dataset to include 14 species. Using a multi‐temporal hierarchical model, we demonstrate the ability to include species predicted at &lt;1% frequency in landscape without losing performance on the dominant species. The final model has over 75% accuracy for 14 species with improved rare species classification compared to 61% accuracy of a baseline deep learning model. After filtering out dead trees, we generate landscape species maps of individual crowns for over 670 000 individual trees. We find distinct patches of forest composed of rarer species at the full‐site scale, highlighting the importance of capturing species diversity in training data. We estimate the relative abundance of 14 species within the landscape and provide three measures of uncertainty to generate a range of counts for each species. For example, we estimate that the dominant species, Pinus palustris accounts for c. 28% of predicted stems, with models predicting a range of counts between 160 000 and 210 000 individuals. These maps provide the first estimates of canopy tree diversity within a NEON site to include rare species and provide a blueprint for capturing tree diversity using airborne computer vision at broad scales.

In memoriam: Eleanor Jane Sterling (1960–2023)

In memoriam: Eleanor Jane Sterling (1960–2023)

Time to consider the timing of conservation measures: Designing cost-effective agri-environment schemes under climate change

AbstractClimate change is one of the largest threats for biodiversity as changing climatic conditions often make existing habitat sites less suitable. This poses new challenges for species conservation, in particular in agricultural landscapes, where climate change may also induce modifications in agricultural land use. To conserve species in agricultural landscapes, agri-environment schemes (AES) which compensate farmers for implementing conservation measures are commonly used. However, current research on the cost-effective design of AES largely ignores necessary adaptations of conservation measures given climate change. We develop a climate-ecological-economic (CEE) model to examine how the cost-effective design of AES has to be modified under climate change. We apply the model to the conservation of eight meadow bird species in Northern Germany and determine the cost-effective conservation measures under recent and future climatic conditions. We find that the timing of conservation measures in the AES needs to be changed in the RCP8.5 scenario given the species’ phenological adaptations and the impact of extreme events (inundations) on costs. The novelty of the research lies in the development of a CEE model which considers both spatial and temporal changes in costs and benefits to develop recommendations for the cost-effective design of AES under climate change.

Monitoring distribution, density and introgression in European wildcats in Switzerland

Monitoring the population dynamics of elusive hybridizing species in human-dominated landscapes helps conservation and management of these species. This is particularly relevant when wild species are potentially threatened by hybridization with a domestic species, as is the case for European wildcats and domestic cats. We estimated the occupancy of European wildcats in 2010 and in 2020, based on genetic analysis of single hairs, systematically collected at 121 1 km2 sites, evenly distributed across the Jura (4307 km2). We mapped the current density of European wildcats in Switzerland based on a spatial capture recapture model using data from 246 1 km2 sites, evenly distributed across the Jura, the Plateau and the Prealps. We estimated the level of admixture between European wildcats and domestic cats in Switzerland in 2010 and 2020. The proportion of occupied sites in the Swiss Jura doubled from 15 % to 31 % within ten years. The current wildcat population size in Switzerland is estimated to be around 1100 individuals. Gene flow from domestic cats into the wildcat gene pool increased from 0.02 to 0.03 migrants per generation between 2010 and 2020. The results suggest that the European wildcat distribution in Switzerland expanded to regions of increased human presence and thus presumably also of increased domestic cat presence. In this context, the threat of introgression of domestic genes becomes more relevant. Thus, continued monitoring of population dynamics using molecular tools is recommended. Long-term systematic genetic survey of population dynamics proves to be an important tool to manage elusive hybridizing mammals.

Assessment of habitat‐specific competition for oral rabies vaccine baits between raccoons and opossums

AbstractThroughout the eastern United States, the National Rabies Management Program (NRMP) distributes oral rabies vaccine (ORV) baits to manage rabies virus circulation in raccoon (Procyon lotor) populations. The consumption of vaccine baits by non‐target species including Virginia opossums (Didelphis virginiana) may reduce the effectiveness of ORV programs, but competition for baits remains poorly quantified in many areas of the southeastern United States. We distributed placebo ORV baits injected with a biomarker across 4 land cover types (bottomland hardwood, upland pine, riparian, isolated wetland) on the Savannah River Site in South Carolina, USA, 2017–2019. We then trapped and collected whiskers from 247 raccoons and 78 opossums to assess biomarker presence using fluorescent microscopy. Our data revealed greater bait uptake probability by raccoons (estimated x̅ = 0.30, 95% CI = 0.19–0.44) compared to opossums (estimated x̅ = 0.11, 95% CI = 0.05–0.23) across all cover types surveyed. Probability of bait consumption was not affected by cover type or the abundance of raccoons or opossums. Among raccoons, males were more likely to consume baits than females (estimated x̅ = 0.28, 95% CI = 0.17–0.44 for males and 0.14, 95% CI = 0.05–0.31 for females) and probability of consumption increased by 0.08 with each additional day trapped during the 10‐day trapping session. Uptake rates for raccoons were relatively low compared to other studies and not influenced by competition with opossums. These low consumption rates indicate that additional research addressing the roles of baiting season, bait density, and resource selection will be important to maximize ORV bait uptake by target species in these southeastern landscapes.

Gray Blight Disease on Euonymus japonicas Caused by Pestalotiopsis disseminata in China.

Euonymus japonicas is widely planted as an important landscape species throughout China. In June 2021, a serious gray blight disease was detected on E. japonicas in Henan Province (32°30'58" N, 112°19'44" E), causing severe defoliation of infected trees with a foliar disease incidence of 52 to 70% (n = 100). Gray spots initially appeared on leaves, gradually expanded into irregular white blotches with dark brown borders, eventually leading to wilting and death of the leaves. The junctions between the lesion and healthy tissue of infected leaves were cut into 3 × 3-mm pieces, surface sterilized with 1% NaClO solution for 1 min, rinsed in sterile water, and placed on PDA plates with 50 μg/ml of streptomycin. Three isolates (HY94, HY95, and HY98) were selected for subsequent experiments. The colonies reached 80-85 mm diam after 7 days at 25°C, with undulated margins, white to pale in color, with moderate aerial mycelium on the surface. Conidiomata were globose, solitary, and dark black. Conidia were ellipsoid, straight to slightly curved, 4-septate, 19 to 26.4 × 5 to 7.5 μm (n=100). The apical cell was cylindrical and hyaline, with 2 to 3 tubular apical appendages, unbranched, filiform, 2.5 to 3.5 μm in length. The basal appendage was single, unbranched, centric, 1.5 to 3 μm long. The characteristics were close to those of Pestalotiopsis spp. (Maharachchikumbura et al. 2013). The genomic DNA was extracted, and the rDNA internal transcribed spacer (ITS), the β-tubulin gene (TUB), and the translation elongation factor 1-alpha gene (TEF1) were amplified by primers ITS1/ITS4, Bt2a/Bt2b, and EF1-728F/EF1-986R, respectively (Carbone and Kohn, 1999). Sequences were submitted to GenBank with accession numbers OL840327-OL840329(ITS), OL961454-OL961456(TUB), and OL961448-OL961450 (TEF1). BLASTn analyses of ITS, TUB, and TEF1 sequences exhibited 99.46, 99.05, and 96.53% similarity to the sequences of Pestalotiopsis disseminata strain MEAN1166 (ITS, 548/551 bp; MT374688) (Silva et al. 2020), PSH2000I-066 (TUB, 418/422 bp; DQ333575), and TAP29O082 (TEF1, 250/259 bp; AB453850), respectively in GenBank. The three isolates formed a clade with the type strains, MEAN 1166 and MAFF238347 of P. disseminata in phylogenetic trees, being clearly seperated from other Pestalotiopsis spp. Based on morphological and molecular evidence, the pathogen was identified as P. disseminata (Maharachchikumbura et al. 2011). To fulfill Koch's postulates, pathogenicity was tested with three isolates. Ten healthy leaves of 5-year-old intact plants were used per isolate and inoculated with mycelial plugs on both nonwounded and wounded leaves. Control leaves were inoculated with agar plugs. The inoculated plants were placed at 28°C in a greenhouse (90% relative humidity). Distinct lesions were observed after 10 days. The pathogen reisolated was identical to that of the original cultures according to phenotype and ITS sequences. The control leaves showed no obvious symptoms. P. disseminata is known to cause disease on several important plants in China, such as Camellia japonica (Zhang et al. 2012), Pinus armandii (Hu et al. 2007), and Tripterygium wilfordii (Kumar et al. 2004). This is the first report of gray blight disease caused by P. disseminata on E. japonicas in China and worldwide. The fungal pathogen identification will provide valuable information for prevention and management of gray blight disease associated with E. japonicas.

Hourly activity patterns of the insectivorous bat assemblage in the urban–rural landscape of Lima, Peru

Abstract Circadian rhythms of bats are simultaneously influenced by both abiotic and biotic factors that vary across different landscapes. Since cities modify environmental conditions in which bats forage and roost, their temporal activity can be altered. Based on acoustic surveys, we described hourly activity patterns of eight aerial insectivorous bat species in an urban–rural landscape of Lima, Peru. We also explored whether bats show temporal partitioning at the assemblage level and, for three common species, if activity patterns change between landscape units (urban and rural areas) or moonlight intensity (dark and bright nights). At the assemblage level, bats displayed high temporal overlap, especially in rural areas. At the species level, Mormopterus kalinowskii and Tadarida brasiliensis displayed bimodal patterns at both landscape units, and Promops davisoni showed an almost uniform pattern or bimodal pattern at urban and rural sites, respectively. In rural areas, other bat species exhibited either unimodal patterns (Nyctinomops laticaudatus, N. aurispinosus, N. macrotis, and Tomopeas ravus) or a bimodal pattern (Myotis). Moonlight intensity had little influence on activity periods of most bat species. Our study provides valuable information for sampling designs and future studies on activity patterns focused on coexistence among insectivorous bat species in arid landscapes.

Еколого-фауністична характеристика лучно-степових таксоценів колембол Східного Поділля

A comparative analysis of the taxonomic and ecological structure of meadow-steppe collembolan taxocenes of Eastern Podillya was carried out. 77 species of Сollembola belonging to 41 genera and 14 families were found on the studied territory. From 6 to 18 species of collembola were found at the level of point alpha diversity, and 40–42 species of coenotic alpha diversity, which indicates a large capacity of the soil environment for Сollembola in this type of biocenoses of Podillya. The investigated meadow-steppe Collembola taxocenes are characterized by average population density indicators, from 5.8 to 9.1 thousand spec./m2. It was found that the structure of dominance, spectra of life forms and biotope groups of the studied taxocenes have their own specificity, due to local edaphic conditions, as well as the degree of anthropogenic transformation. The analysis of the ecological structure showed that, in terms of species richness, complexes of xeroresistant (47.6–60 % of the total species richness) and mesophilic forms (17.5–35.7 %) prevail in meadow-steppe taxocenes of collembola. The studied taxocenes include six biotope groups of species. The biotope group of open landscape species (meadow-steppe, meadow and steppe) prevails, the share of which in the composition of the studied taxocenes is 52.4–62.5 % of the species diversity. According to the indicator of relative abundance, 44.4–64.8% belong to meadow-steppe species. A feature of the investigated taxocenes is the presence in their composition of 7.1 to 15 % of atmobiotic collembolan species that inhabit macrophytes and the surface of loose leaf litter and carry out regular daily migrations in the grass, trees and shrubs, as well as about 5 % of corticolous collembolan species, which are ecologically related to lichens, mosses, tree bark and stone substrates. It was established that in all three meadow-steppe phytocenoses of Eastern Podillya, a specialized type of collembolan taxocene is formed, where more than 40 % of the population has meadow-steppe species that are ecologically related to xerophytic grass groups.

Evaluating the genetic consequences of population subdivision as it unfolds and how to best mitigate them: A rare story aboutkoalas.

The genetic consequences of the subdivision of populations are regarded as significant to long-term evolution, and research has shown that the scale and speed at which this is now occurring is critically reducing the adaptive potential of most species which inhabit human-impacted landscapes. Here, we provide a rare and, to our knowledge, the first analysis of this process while it is happening and demonstrate a method of evaluating the effect of mitigation measures such as fauna crossings. We did this by using an extensive genetic data set collected from a koala population which was intensely monitored during the construction of linear transport infrastructure which resulted in the subdivision of their population. First, we found that both allelic richness and effective population size decreased through the process of population subdivision. Second, we predicted the extent to which genetic drift could impact genetic diversity over time and showed that after only 10 generations the resulting two subdivided populations could experience between 12% and 69% loss in genetic diversity. Lastly, using forward simulations we estimated that a minimum of eight koalas would need to disperse from each side of the subdivision per generation to maintain genetic connectivity close to zero but that 16 koalas would ensure that both genetic connectivity and diversity remained unchanged. These results have important consequences for the genetic management of species in human-impacted landscapes by showing which genetic metrics are best to identify immediate loss in genetic diversity and how to evaluate the effectiveness of any mitigation measures.

The complete chloroplast genome of Vitex parviflora A.Juss. (Lamiaceae) and its comparison with Vitex species

ABSTRACT Vitex parviflora A.Juss. is a highly valuable construction timber and ornamental landscape species native in the islands of the Philippines and Timor. Here, we assembled and characterized the complete chloroplast genome of V. parviflora which yielded a circularized genome 154,024 bp long, and represented by a quadripartite structure consisting of long single-copy (84,848 bp), short single-copy (17,852 bp), and two inverted repeat (IR) regions (25,662 bp). In comparison with the other published Vitex plastome sequences, the V. parviflora genome has the smallest number of annotated genes comprising 86 protein-coding, 36 tRNA, and 8 rRNA genes. Notable are the two tRNA genes having three and four copies, respectively. Phylogenetic analysis is supported with 100% bootstrap value which resulted to V. parviflora grouping closer with V. yunnanensis, a species endemic to China, than with V. quinata which it is difficult to discriminate from using morphological markers. Differences in IR regions and the presence of pseudogenes varied considerably, suggesting that V. parviflora is clearly different from the closely related taxa from the phylogram. These findings will provide a good basis for chloroplast genome assembly of other Vitex species and be useful for resolving problematic taxonomic positions within the genera, as well as provide additional evidence for species delimitation.

The Mistle Thrush (Turdus viscivorus) in a production forestry context: A territory mapping study

In Northern Europe, the Mistle Thrush (Turdus viscivorus) is a relatively poorly studied species inhabiting forested landscapes where it has historically experienced population declines. Those declines have been attributed to the spread of intensive forest management; yet, the populations have stabilized or increased in recent decades. To distinguish the main forestry impacts on its breeding numbers and distribution, a multiple-visit territory-mapping study was carried out over 15 km2 of production forest landscape in Estonia. At the landscape scale, the breeding distribution was concentrated to conifer forests on bog peat where the densities were five times higher than in other conifer forests and (at least) ten times higher than in non-conifer forests. This reveals a broad distribution pattern where high-density (core) habitats only host a small fraction of the total population; their relative contribution to the recruitment remains unknown. At the breeding territory scale (within 150 m from a nest), Mistle Thrushes avoided recent clear-cuts and preferred larger areas of old stands more than expected from the distribution of suitable stands for nesting. This indicated that, in a short term, clear-cutting reduces nesting habitats of this species disproportionately more than expected from the cut area alone; this is in accordance with the documented 20th century declines of the species in Fennoscandia. The relationship with forestry drainage is more complicated, however, due to delayed effects and covariation with the main breeding habitat. The basic ecology of the species in conifer forest-wetland landscapes, which are subjected to management pressures, warrants future studies and might provide general insights into the dynamics and functioning of these ecosystems.

Diversity and function of tree species in human-modified Atlantic Forest landscapes

Diversity and function of tree species in human-modified Atlantic Forest landscapes