Spatial Genetic Analyses Research Articles

Using fine-scale spatial genetics of Norway rats to improve control efforts and reduce leptospirosis risk in urban slum environments.

The Norway rat (Rattus norvegicus) is a key pest species globally and responsible for seasonal outbreaks of the zoonotic bacterial disease leptospirosis in the tropics. The city of Salvador, Brazil, has seen recent and dramatic increases in human population residing in slums, where conditions foster high rat density and increasing leptospirosis infection rates. Intervention campaigns have been used to drastically reduce rat numbers. In planning these interventions, it is important to define the eradication units ‐ the spatial scale at which rats constitute continuous populations and from where rats are likely recolonizing, post‐intervention. To provide this information, we applied spatial genetic analyses to 706 rats collected across Salvador and genotyped at 16 microsatellite loci. We performed spatially explicit analyses and estimated migration levels to identify distinct genetic units and landscape features associated with genetic divergence at different spatial scales, ranging from valleys within a slum community to city‐wide analyses. Clear genetic breaks exist between rats not only across Salvador but also between valleys of slums separated by <100 m—well within the dispersal capacity of rats. The genetic data indicate that valleys may be considered separate units and identified high‐traffic roads as strong impediments to rat movement. Migration data suggest that most (71–90%) movement is contained within valleys, with no clear source population contributing to migrant rats. We use these data to recommend eradication units and discuss the importance of carrying out individual‐based analyses at different spatial scales in urban landscapes.

An interstate highway affects gene flow in a top reptilian predator (Crotalus atrox) of the Sonoran Desert

Roads can substantially impact the population connectivity of a wide range of terrestrial vertebrates, often resulting in loss of genetic diversity and an increase of spatial genetic structure. We studied the Western Diamond-backed Rattlesnake (Crotalus atrox), a large and abundant venomous predator, to test the hypothesis that a large and relatively new roadway in Arizona (Interstate Highway I-10) is a barrier that impacts gene flow and population genetics via habitat fragmentation. Based on 72 C. atrox sampled from three specific sampling sites (“subpopulations”) on both the west and east corridors of I-10, we used 30 nuclear microsatellite DNA loci and three mitochondrial DNA genes (2615 bp) to assess genetic diversity and structure, estimate effective population size (N e ), and describe patterns of gene flow. We found no evidence for loss of genetic diversity or a decrease in N e between the three subpopulations. Our microsatellite analysis showed that two subpopulations in close proximity (4 km), but separated by I-10, showed greater levels of genetic differentiation than two subpopulations that were separated by a greater distance (7 km) and not by I-10 or any other obvious barriers. Mitochondrial DNA analyses showed no significant genetic differentiation nor any indication of historically impeded gene flow. Tajima’s D and mismatch distribution tests revealed that demographic expansion is occurring in the overall population (all three subpopulations). Bayesian clustering and spatial genetic autocorrelation analyses of microsatellite data showed resistance to gene flow at the approximate location of I-10. Simulations that investigated gene flow between the subpopulations (with and without a highway barrier present) were consistent with our molecular results. We conclude that I-10 has reduced gene flow in a population of an important reptilian predator of the Sonoran Desert in southern Arizona and make conservation recommendations for reversing this trend.

Pfhrp2-Deleted Plasmodium falciparum Parasites in the Democratic Republic of the Congo: A National Cross-sectional Survey.

Rapid diagnostic tests (RDTs) account for more than two-thirds of malaria diagnoses in Africa. Deletions of the Plasmodium falciparum hrp2 (pfhrp2) gene cause false-negative RDT results and have never been investigated on a national level. Spread of pfhrp2-deleted P. falciparum mutants, resistant to detection by HRP2-based RDTs, would represent a serious threat to malaria elimination efforts. Using a nationally representative cross-sectional study of 7,137 children under five years of age from the Democratic Republic of Congo (DRC), we tested 783 subjects with RDT-/PCR+ results using PCR assays to detect and confirm deletions of the pfhrp2 gene. Spatial and population genetic analyses were employed to examine the distribution and evolution of these parasites. We identified 149 pfhrp2-deleted parasites, representing 6.4% of all P. falciparum infections country-wide (95% confidence interval 5.1-8.0%). Bayesian spatial analyses identified statistically significant clustering of pfhrp2 deletions near Kinshasa and Kivu. Population genetic analysis revealed significant genetic differentiation between wild-type and pfhrp2-deleted parasite populations (GST = .046, p ≤ .00001). Pfhrp2-deleted P. falciparum is a common cause of RDT-/PCR+ malaria among asymptomatic children in the DRC and appears to be clustered within select communities. Surveillance for these deletions is needed, and alternatives to HRP2-specific RDTs may be necessary.

Genetic Diversity and Demographic History of Wild and Cultivated/Naturalised Plant Populations: Evidence from Dalmatian Sage (Salvia officinalis L., Lamiaceae).

Dalmatian sage (Salvia officinalis L., Lamiaceae) is a well-known aromatic and medicinal Mediterranean plant that is native in coastal regions of the western Balkan and southern Apennine Peninsulas and is commonly cultivated worldwide. It is widely used in the food, pharmaceutical and cosmetic industries. Knowledge of its genetic diversity and spatiotemporal patterns is important for plant breeding programmes and conservation. We used eight microsatellite markers to investigate evolutionary history of indigenous populations as well as genetic diversity and structure within and among indigenous and cultivated/naturalised populations distributed across the Balkan Peninsula. The results showed a clear separation between the indigenous and cultivated/naturalised groups, with the cultivated material originating from one restricted geographical area. Most of the genetic diversity in both groups was attributable to differences among individuals within populations, although spatial genetic analysis of indigenous populations indicated the existence of isolation by distance. Geographical structuring of indigenous populations was found using clustering analysis, with three sub-clusters of indigenous populations. The highest level of gene diversity and the greatest number of private alleles were found in the central part of the eastern Adriatic coast, while decreases in gene diversity and number of private alleles were evident towards the northwestern Adriatic coast and southern and eastern regions of the Balkan Peninsula. The results of Ecological Niche Modelling during Last Glacial Maximum and Approximate Bayesian Computation suggested two plausible evolutionary trajectories: 1) the species survived in the glacial refugium in southern Adriatic coastal region with subsequent colonization events towards northern, eastern and southern Balkan Peninsula; 2) species survived in several refugia exhibiting concurrent divergence into three genetic groups. The insight into genetic diversity and structure also provide the baseline data for conservation of S. officinalis genetic resources valuable for future breeding programmes.

A multiplex set for microsatellite typing and sexing of the European bee-eater (Merops apiaster)

Microsatellite loci are widely used in ecological and evolutionary studies to assess inbreeding, genetic parentage and population structure. Such loci are often optimised in multiplexes to allow for economical and efficient use. Here, we tested 11 microsatellite loci designed for use in European bee-eaters (Merops apiaster), along with 31 loci isolated in other species, for their utility in European bee-eaters sampled on Susak Island, Croatia. Of these 42 loci, 20 were polymorphic in 38 individuals. These polymorphic loci were further assessed in a sub-set of 23 adults, excluding close relatives, and exhibited between three and 13 alleles each. All loci were autosomal, as indicated by the presence of heterozygotes in both males and females. One of the polymorphic loci exhibited low heterozygosity, three loci deviated from Hardy-Weinberg equilibrium and three pairs of loci displayed linkage disequilibrium. The remaining selected eight cross-species loci and seven loci isolated in European bee-eaters were combined with two sex-typing markers and optimised in five multiplexes. A combination of 15 autosomal loci of varying degrees of polymorphism makes this multiplex set particularly suitable for both parentage and spatial genetic analyses. This multiplex set therefore provides a useful toolkit for studying kin selection and population genetics in the cooperatively breeding European bee-eater and, potentially, in other closely related species.

A mistletoe tale: postglacial invasion of Psittacanthus schiedeanus (Loranthaceae) to Mesoamerican cloud forests revealed by molecular data and species distribution modeling.

BackgroundEcological adaptation to host taxa is thought to result in mistletoe speciation via race formation. However, historical and ecological factors could also contribute to explain genetic structuring particularly when mistletoe host races are distributed allopatrically. Using sequence data from nuclear (ITS) and chloroplast (trnL-F) DNA, we investigate the genetic differentiation of 31 Psittacanthus schiedeanus (Loranthaceae) populations across the Mesoamerican species range. We conducted phylogenetic, population and spatial genetic analyses on 274 individuals of P. schiedeanus to gain insight of the evolutionary history of these populations. Species distribution modeling, isolation with migration and Bayesian inference methods were used to infer the evolutionary transition of mistletoe invasion, in which evolutionary scenarios were compared through posterior probabilities.ResultsOur analyses revealed shallow levels of population structure with three genetic groups present across the sample area. Nine haplotypes were identified after sequencing the trnL-F intergenic spacer. These haplotypes showed phylogeographic structure, with three groups with restricted gene flow corresponding to the distribution of individuals/populations separated by habitat (cloud forest localities from San Luis Potosí to northwestern Oaxaca and Chiapas, localities with xeric vegetation in central Oaxaca, and localities with tropical deciduous forests in Chiapas), with post-glacial population expansions and potentially corresponding to post-glacial invasion types. Similarly, 44 ITS ribotypes suggest phylogeographic structure, despite the fact that most frequent ribotypes are widespread indicating effective nuclear gene flow via pollen. Gene flow estimates, a significant genetic signal of demographic expansion, and range shifts under past climatic conditions predicted by species distribution modeling suggest post-glacial invasion of P. schiedeanus mistletoes to cloud forests. However, Approximate Bayesian Computation (ABC) analyses strongly supported a scenario of simultaneous divergence among the three groups isolated recently.ConclusionsOur results provide support for the predominant role of isolation and environmental factors in driving genetic differentiation of Mesoamerican parrot-flower mistletoes. The ABC results are consistent with a scenario of post-glacial mistletoe invasion, independent of host identity, and that habitat types recently isolated P. schiedeanus populations, accumulating slight phenotypic differences among genetic groups due to recent migration across habitats. Under this scenario, climatic fluctuations throughout the Pleistocene would have altered the distribution of suitable habitat for mistletoes throughout Mesoamerica leading to variation in population continuity and isolation. Our findings add to an understanding of the role of recent isolation and colonization in shaping cloud forest communities in the region.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-016-0648-6) contains supplementary material, which is available to authorized users.

Combining pollination ecology and fine-scale spatial genetic structure analysis to unravel the reproductive strategy of an insular threatened orchid

In Vanilla species (Orchidaceae), the influence of sexual and asexual mating systems on the spatial structuring of population genetic diversity is understudied. These elements are crucial in restoration program to limit inbreeding depression and to maintain the genetic diversity of natural populations. In the remnant fragments of tropical dry forest in Mayotte (Comoros Archipelago, Indian Ocean), the clarification of the reproductive strategies of the orphan leafless Vanilla humblotii Rchb. f. will provide a better understanding of its fine-scale spatial genetic structure. Approaches combining reproductive biology and fine-scale spatial genetic structure analyses using ten microsatellite markers in 49 individuals sampled in the only remaining large population of V. humblotii were employed to unravel the reproductive strategies of this species. The results showed that V. humblotii displays unscented flowers and is allogamous and pollinator-dependent although also self-compatible. A total absence of pollen movements and a low level of natural fruit set (~1%) are reported, although a wild bee (Allodape obscuripennis Strand, Xylocopinae) and a bird (Nectarinia coquerelli, Nectarinidae) visited the flowers. A high genotypic diversity (G/N=0.88) and a phalanx clonal growth are detected, and seed dispersal is higher than pollen dispersal. The phalanx distribution of the repeated genotypes (ramets arisen from the same genet) is responsible for significant autocorrelations detected at small distances. Limited inbreeding was detected although geitonogamy could have been enhanced by vegetative reproduction. This study highlights the need to perform interdisciplinary studies to unravel the reproductive strategy of clonal plant species with a deceptive pollination system.

Fine-scale spatial genetic structure analysis in two Argentine populations of Prosopis alba (Mimosoideae) with different levels of ecological disturbance

Spatial genetic structure (SGS) in plants is primarily determined by the interaction between pollen and seed dispersal, but it is strongly affected by both evolutionary and ecological processes. SGS studies in forest species also allow evaluating the consequences of human-mediated disturbance on pollen and seed movement and designing strategies of sustainable use of native forest resources. The present paper compares fine-scale SGS between two populations of Prosopis alba: Fernandez-Forres (FF) and Campo Duran (CD), based on the variation of 12 SSR markers. Populations show different history, management, and levels of disturbance. FF is highly disturbed and fragmented by agricultural activity and stock-breeding. Although no significant differences were observed in genetic variability parameters, highly significant genetic differentiation was detected with virtually no admixture between populations. SGS was positive and significant at short distances only in the non-disturbed population of CD. Accordingly, estimated neighborhood size and effective gene dispersal are higher in FF than in CD. This result might be explained by the higher incidence of livestock in seed dispersal and the patchy structure favoring longer pollen movement and artificial thinning and selection in FF. The results are relevant to conservation and breeding programs, suggesting that the distance between seed trees to be sampled should be larger than 22 m, the estimated distance of significant SGS in P. alba.

Spatially structured morphological and molecular diversity amongDioscorea cayenensisandD. rotundatayam accessions

AbstractYams (Dioscoreaspp.) are one of the main root and tuber crops in the world, especially within the species complexDioscorea cayenensis/D. rotundata. Few studies have been conducted in Brazil with these species, including genetic diversity. The objective of this study was to characterize the genetic diversity of local varieties ofD. cayenensisandD. rotundatausing morphological and molecular markers, and provide information on the management and use of the crop by family farmers from different regions in Brazil. Thus, yam tubers were sampled from several municipalities in the South, Southeast and Northeast regions. Eighteen morphological traits and ten microsatellite loci were used to analyse 47 yam accessions (23D. cayenensisand 24D. rotundata). Species identification was carried out after field morphological evaluation. Spatial genetic analysis indicated significant structure among the local varieties, mostly between regions and species. Both cluster and Bayesian analyses showed a separation of the accessions into two distinct groups: group I with accessions originated from the Southeast region and group II with accessions originated from the Northeast region, while accessions from the South region were intermediate or included in either group. The results showed a separation betweenD. cayenensisandD. rotundataaccessions in Brazil, and thatD. cayenensisoccurs predominantly in the Southeast region, whileD. rotundataoccurs in the Northeast region. Further studies with larger sampling would be welcome in order to confirm these findings. Also, this study highlights the importance of family farmers in the genetic diversity conservation of these species in Brazil.

Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study.

The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatellite data set was analysed with a) spatial and non-spatial Bayesian individual-based clustering (IBC) approaches (STRUCTURE, TESS, BAPS and GENELAND), and b) multivariate methods [discriminant analysis of principal components (DAPC) and spatial principal component analysis (sPCA)]. Additionally, because isolation by distance (IBD) is a common spatial genetic pattern in mobile and continuously distributed species and it may represent a challenge to the performance of the above methods, the microsatellite data set was tested for its presence. Overall, the genetic structure of the stone marten in the Iberian Peninsula was characterized by a NE-SW spatial pattern of IBD, and this may explain the observed disagreement between clustering solutions obtained by the different IBC methods. However, there was significant indication for contemporary genetic structuring, albeit weak, into at least three different subpopulations. The detected subdivision could be attributed to the influence of the rivers Ebro, Tagus and Guadiana, suggesting that main watercourses in the Iberian Peninsula may act as semi-permeable barriers to gene flow in stone martens. To our knowledge, this is the first phylogeographic and population genetic study of the species at a broad regional scale. We also wanted to make the case for the importance and benefits of using and comparing multiple different clustering and multivariate methods in spatial genetic analyses of mobile and continuously distributed species.

The effect of sex-biased dispersal on opposite-sexed spatial genetic structure and inbreeding risk.

Natal sex-biased dispersal has long been thought to reduce the risk of inbreeding by spatially separating opposite-sexed kin. Yet, comprehensive and quantitative evaluations of this hypothesis are lacking. In this study, we quantified the effectiveness of sex-biased dispersal as an inbreeding avoidance strategy by combining spatially explicit simulations and empirical data. We quantified the extent of kin clustering by measuring the degree of spatial autocorrelation among opposite-sexed individuals (FM structure). This allowed us to systematically explore how the extent of sex-biased dispersal, generational overlap, and mate searching distance, influenced both kin clustering, and the resulting inbreeding in the absence of complementary inbreeding avoidance strategies. Simulations revealed that when sex-biased dispersal was limited, positive FM genetic structure developed quickly and increased as the mate searching distance decreased or as generational overlap increased. Interestingly, complete long-range sex-biased dispersal did not prevent the development of FM genetic structure when generations overlapped. We found a very strong correlation between FM genetic structure and both FIS under random mating, and pedigree-based measures of inbreeding. Thus, we show that the detection of FM genetic structure can be a strong indicator of inbreeding risk. Empirical data for two species with different life history strategies yielded patterns congruent with our simulations. Our study illustrates a new application of spatial genetic autocorrelation analysis that offers a framework for quantifying the risk of inbreeding that is easily extendable to other species. Furthermore, our findings provide other researchers with a context for interpreting observed patterns of opposite-sexed spatial genetic structure.

Spatial genetic analyses reveal strong genetic structure in two populations of the outcrossing tree fernAlsophila firma(Cyatheaceae)

The development of spatial genetic structure (SGS) in seed plants has been linked to several biological attributes of species, such as breeding system and life form. However, little is known about SGS in ferns, which together with lycopods are unique among land plants in having two free-living life stages. We combined spatial aggregation statistics and spatial genetic autocorrelation analyses using five plastid microsatellites and one nuclear gene to investigate SGS in two populations of the outcrossing tree fern Alsophila firma (Cyatheaceae). We assessed how the observed patterns compare with those estimated for other ferns and seed plants. Populations of A. firma exhibited strong SGS, spatial clustering of individuals, substantial clonal diversity and no inbreeding. SGS in ferns appears to be higher than in most seed plants analysed to date. Contrary to our expectations, an outcrossing breeding system, wind dispersal and an arborescent life form did not translate into weak or no SGS. In ferns, SGS is probably being affected by the life cycle with two free-living life stages. The reproductive biology of ferns appears to be more complex than previously thought. This implies that SGS in ferns is affected by some factors that cannot be inferred from the study of flowering plants. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 177, 439–449.

Spatial genetic structure of dusky dolphin, Lagenorhynchus obscurus, along the argentine coast: preserve what scale?

Abstract The dusky dolphin (Lagenorhynchus obscurus) represents one of the most abundant species of small cetacean in Argentine waters. During the 1980s and 1990s, high levels of incidental mortality in purse and trawl fisheries were documented, and in recent decades tourism activities have been added as a potential source of disturbance. The study objectives were to identify spatial genetic structure and regional genetic patterns of dusky dolphins along the Argentine coast. The variation of 413bp of the control region of 119 individuals over six locations spread along 2800 km (38°40'S to 54°30'S) was examined. Spatial genetic analyses, SAMOVA, genetic landscape shapes and autocorrelation analyses were conducted. The most probable configuration was K=2, island population vs. continental populations (FCT = 0.774) and the spatial autocorrelation analysis showed a strong regional genetic structure, defining an operational unit at &lt; 50 km. The results provide valuable information that should be taken into account in the development of conservation strategies and management of the species; making the efforts focus on conserving vulnerable dusky dolphin groups by protecting their preferred coastal shallow habitat and by monitoring and regulating the dolphin watching and fishing activities, acting upon local populations along the Argentine coast. Copyright © 2015 John Wiley &amp; Sons, Ltd.

Influence of Pleistocene glacial/interglacial cycles on the genetic structure of the mistletoe cactus Rhipsalis baccifera (Cactaceae) in Mesoamerica.

Phylogeographical work on cloud forest-adapted species provides inconsistent evidence on cloud forest dynamics during glacial cycles. A study of Rhipsalis baccifera (Cactaceae), a bird-dispersed epiphytic mistletoe cactus, was conducted to investigate genetic variation at sequence data from nuclear [internal transcribed spacer (ITS), 677 bp] and chloroplast (rpl32-trnL, 1092bp) DNA for 154 individuals across the species range in Mesoamerica to determine if such patterns are consistent with the expansion/contraction model of cloud forest during glacial cycles. We conducted population and spatial genetic analyses as well as gene flow and divergence time estimates between 24 populations comprising the distribution of R. baccifera in Mexico and Guatemala to gain insight of the evolutionary history of these populations, and a complementary species distribution modeling approach to frame information derived from the genetic analyses into an explicit paleoecological context. The results revealed a phylogeographical break at the Isthmus of Tehuantepec, and high levels of genetic diversity among populations and cloud forest areas. Despite the genetic differentiation of some R. baccifera populations, the widespread ITS ribotypes suggest effective nuclear gene flow via pollen and population differentiation shown by the rpl32-trnL suggests more restricted seed flow. Predictions of species distribution models under past last glacial maximum (LGM) climatic conditions and a significant signal of demographic expansion suggest that R. baccifera populations experienced a range expansion tracking the conditions of the cloud forest distribution and shifted to the lowlands with population connectivity during the LGM.

Genetic Identity, Ancestry and Parentage in Farmer Selections of Cacao from Aceh, Indonesia Revealed by Single Nucleotide Polymorphism (SNP) Markers

Cacao (Theobroma cacao L.), the source of cocoa powder and cocoa butter used for chocolate, originated in the rainforests of South America. Indonesia is the 3rd largest cocoa producer in the world with an annual cocoa output of 0.84 million tons. The main objective of this study was to examine the genetic background of superior farmer-selected clones from farmers’ fields, in order to provide a scientific basis to support cacao rehabilitation in Aceh, Indonesia. The pilot experiment assessed 136 genotypes, including 80 Aceh farmer selections and 56 reference international clones, using 53 single nucleotide polymorphism (SNP) markers. Principle coordinates analysis revealed that the Aceh farmer selections were largely hybrids between Upper Amazon Forastero and Trinitario. Bayesian clustering analysis further specified the germplasm groups of the ancestral contributors. Of the 80 farmer selections, parentage analysis identified 30 parent-offspring relationships contributed by 16 progenitors. Spatial genetic analysis showed no significant global spatial correlation, but local spatial correlation was detected. These results suggest that only a fraction of cacao germplasm from Upper Amazon has been incorporated into farmers’ fields, despite the use of diversie progenitors in breeding programs and seed gardens. This relatively narrow genetic background was likely due either to limited access to diverse hybrids by local farmers or to the over-emphasis on selecting for yield and morphological appearance, such as pods and bean size. Based on the results, a subset of farmer selections with diverse genetic background are chosen and evaluated in field trials.

Phylogeographical structure within Boa constrictor imperator across the lowlands and mountains of Central America and Mexico

AbstractAimTo evaluate the genetic diversity and phylogeographical structure of Boa constrictor imperator, in order to identify the key historical events responsible for its current distribution and diversity.LocationThe Neotropical region of Mexico and mainland Central America.MethodsWe used data from the mitochondrial cytochrome b gene, nuclear ornithine decarboxylase intron and microsatellites to perform spatial genetic analyses, and coalescence methods to infer phylogeographical structure, divergence times and historical demography.ResultsCytochrome b results revealed two main reciprocally monophyletic lineages, one along the Mexican Pacific coast and another along the Gulf of Mexico, Yucatán Peninsula and Central America, diverging c. 5.2 Ma. Both lineages are subdivided into haplogroups and show steady historical growth and a more recent population expansion. High genetic diversity was observed for both cytochrome b (h = 0.944) and microsatellites (HNei = 0.810–0.900).Main conclusionsWe demonstrate deep phylogeographical structure with two reciprocally monophyletic lineages and five genetic clusters in Mexico and Central America. Our results suggest that several geographical barriers (including the Trans‐Mexican Volcanic Belt and the Motagua–Polochic–Jocotán faults) and ecological features generated this structure. We report genetic diversity values for the boa at a regional scale and suggest that the two lineages may be considered distinct species.

Ecological limits can obscure expansion history: patterns of genetic diversity in a temperate mosquito in Hawaii

Because biological invasions can be swift and are rarely examined immediately and/or followed over time, spatial genetic diversity analyses grounded in a well-developed body of theory are often used to reconstruct historical patterns of expansion. Unfortunately, the role of selection in shaping and potentially disrupting such reconstructions has seldom been examined. The mosquito Aedes japonicus japonicus is a temperate, cold-adapted species native to northern Japan that has recently established populations on the island of Hawaii. We used variation at seven microsatellite loci and one mitochondrial locus to examine Hawaiian populations collected in 2004, shortly after its first detection, and then in 2010–2011. Samples were collected along an elevational/temperature gradient, ranging from sea level to 1,200 m. Specimens collected near sea level in 2004 from the earliest detected population exhibited high genetic diversity. Contrary to expectations that diversity would decrease outward from the point of introduction, in 2010–2011 high elevation populations had the greatest genetic diversity, while low elevation populations (including those with high diversity in 2004) now had lower diversity and were significantly differentiated from each other, suggesting severe bottlenecks. We hypothesize that differential survival across temperatures at high versus low elevations has subverted the expected genetic signature of an expanding population.

Spatial genetic pattern in an economically beneficial insect, the cyclical African wild silk moth (Gonometa postica)

The African wild silk moth (Gonometa postica) exhibits large inter-annual population size fluctuations in the Kalahari region of southern Africa. Spent cocoons from this species are currently being utilized in a local silk industry. An understanding of the recolonization dynamics of a particular harvested site, and of the population genetic effects of such dispersal, are crucial for designing a scientifically-based harvesting strategy. I link morphological estimates of flying ability to microsatellite genotyping in the determination of dispersal ability of this species. Morphological results suggest that the moth is a poor disperser with high wing loadings and males are better fliers than females. There is a significant effect of isolation-by-distance. Spatial population genetic analyses of microsatellite data further indicate lower and upper bounds on dispersal of 90 m and 50 km. The combined evidence suggests male-biased dispersal over several dozen kilometers with females that do not disperse over large distances. I discuss the potential influences of large population size fluctuations on patterns of genetic diversity and the implications for the inference of dispersal in my study species.

Spatial Genetic Pattern in an Economically Beneficial Insect, the Cyclical African Wild Silk Moth (Gonometa postica)

Received 12 September 2013. Accepted 22 January 2014 The African wild silk moth (Gonometa postica) exhibits large inter-annual population size fluctuations in the Kalahari region of southern Africa. Spent cocoons from this species are currently being utilized in a local silk industry. An understanding of the recolonization dynamics of a particular harvested site, and of the population genetic effects of such dispersal, are crucial for designing a scientifically-based harvesting strategy. I link morphological estimates of flying ability to microsatellite genotyping in the determination of dispersal ability of this species. Morphological results suggest that the moth is a poor disperser with high wing loadings and males are better fliers than females. There is a significant effect of isolation-bydistance. Spatial population genetic analyses of microsatellite data further indicate lower and upper bounds on dispersal of 90 m and 50 km. The combined evidence suggests male-biased dispersal over several dozen kilometers with females that do not disperse over large distances. I discuss the potential influences of large population size fluctuations on patterns of genetic diversity and the implications for the inference of dispersal in my study species.

Gene flow and immigration: genetic diversity and population structure of lions (Panthera leo) in Hwange National Park, Zimbabwe

The genetic diversity and population structure of a population of African lions in Hwange National Park, Zimbabwe, was studied using 17 microsatellite loci. Spatial genetic analysis using Bayesian methods suggested a weak genetic structure within the population and high levels of gene flow across the study area. We were able to identify a few individuals with aberrant or admixed ancestry, which we interpreted as either immigrants or as descendants thereof. This, together with relatively high genetic diversity, suggests that immigrants from beyond the study area have influenced the genetic structure within the park. We suggest that the levels of genetic diversity and the observed weak structure are indicative of the large and viable Okavango-Hwange population of which our study population is a part. Genetic patterns can also be attributed to still existing high levels of habitat connectivity between protected areas. Given expected increases in human populations and anthropogenic impacts, efforts to identify and maintain existing movement corridors between regional lion populations will be important in retaining the high genetic diversity status of this population. Our results show that understanding existing levels of genetic diversity and genetic connectivity has implications, not only for this lion population, but also for managing large wild populations of carnivores.