Soybean Research Articles

Identification of Flavor Compounds from Soybean Peel Flour (Glycine max L. Merr) with the Addition of Kaffir Lime Leaves in the Blanching Process

Identification of Flavor Compounds from Soybean Peel Flour (Glycine max L. Merr) with the Addition of Kaffir Lime Leaves in the Blanching Process

Soybean ethylene response factors GmENS1 and GmENS2 promote nodule senescence.

The final phase in root nodule development is nodule senescence. The mechanism underlying the initiation of nodule senescence requires further elucidation. Here, we investigated the intrinsic signals governing soybean (Glycine max L. Merr.) nodule senescence, uncovering ethylene as a key signal in this intricate mechanism. Two AP2/ERF transcription factor genes, GmENS1 and GmENS2 (Ethylene-responsive transcription factors required for Nodule Senescence), exhibit heightened expression levels in both aged nodules and nodules treated with ethylene. Overexpression of either GmENS1 or GmENS2 accelerated senescence in soybean nodules, whereas the knockout or knockdown of both genes delayed senescence and enhanced nitrogenase activity. Furthermore, our findings indicated that GmENS1 and GmENS2 directly bind to the promoters of GmNAC039, GmNAC018, and GmNAC030, encoding three NAC transcription factors essential for activating soybean nodule senescence. Notably, the nodule senescence process mediated by GmENS1 or GmENS2 overexpression was suppressed in the soybean nac039/018/030 triple mutant compared with the wild-type control. These data indicate GmENS1 and GmENS2 as pivotal transcription factors mediating ethylene-induced nodule senescence through the direct activation of GmNAC039/GmNAC018/GmNAC030 expression in soybean.

Effects of Salinity on Physicochemical Properties, Flavor Compounds, and Bacterial Communities in Broad Bean Paste-Meju Fermentation.

Broad bean paste (BBP) is a traditional fermented soy food, and its high salt content not only prolongs the fermentation time but also threatens human health. In this study, three BBP-meju with different salt concentrations were prepared, and the effects of varying salinity on fermentation were comprehensively compared. The results showed that salt-reduced fermentation contributed to the accumulation of amino acid nitrogen, reducing sugars, free amino acids, and organic acids. Alcohols, esters, aldehydes, and acids were the main volatile flavor compounds in BBP-meju, and the highest total volatile flavor compounds were found in medium-salt meju. Bacillus, Staphylococcus, Aspergillus, and Mortierella were the dominant microbial communities during fermentation, and there were also three opportunistic pathogens, Enterobacter, Pantoea, and Brevundimonas, respectively. According to Spearman correlation analysis, Wickerhamomyces, Bacillus, Staphylococcus, and Mortierella all showed highly significant positive correlations with ≥3 key flavor compounds, which may be the core functional flora. Furthermore, the dominant microbial genera worked synergistically to promote the formation of high-quality flavor compounds and inhibit the production of off-flavors during salt-reduced fermentation. This study provides a theoretical reference for the quality and safety control of low-salt fermented soy foods.

Recommended Diet Therapy of Mediterranean Diet (MD) and Low Carbohydrate Diet (LCD)

To maintain health and achieve longevity, an adequate diet is crucial, such as the Mediterranean diet (MD) and the low-carbohydrate diet (LCD). The MD is characterized by whole grains, fruits, vegetables, less red meat, more fish, and four eggs per week. The MD may reduce the risk of heart disease, stroke, dementia, and depression. The LCD shows remarkable weight reduction in a short period, but there may be a probable rebound effect within six months. In Japanese cuisine, the intake of fermented soy foods such as natto and miso can lower the risk of death. As a recommendation, the LCD can be started first, followed by the MD for the long term.

Effect of row distance on plant architecture, weed suppression and yield of silage maize (Zea mays L.) and soybean (Glycine max (L.) Merr.) in a pesticide-free cultivation system in Southern Germany

Conventional farming prioritizes monocultures and synthetic chemicals to secure high yields. However, there are a growing number of initiatives worldwide to reduce or eliminate the use of pesticides. One option for pesticide-free weed management is the adjustment of sowing pattern (row distance, plant arrangement, sowing density). This study investigated the effects of an equal distance sowing versus a normal distance sowing (EDS and NDS1) at constant sowing density on plant morphology, growth and yield of silage maize (Zea mays L.) and soybean (Glycine max (L.) Merr.) as well as the weed occurrence. Therefore, a 3-year (2020-2022) pesticide-free, field experiment was conducted at the Heidfeldhof Research Station, University of Hohenheim, Germany. In silage maize, neither plant architecture nor biomass yield showed significant differences between EDS with 0.375 m and NDS with 0.75 m row distance. In contrast, soybean developed a bushier plant architecture with more branches and shorter petioles in EDS with 0.15 m compared to plants in NDS with 0.50 m row distance, demonstrating phenotypic plasticity. A higher number of pods per plant (EDS: 28.05; NDS: 22.73) and seed yield (EDS: 406.58 g m-2; NDS: 389.34 g m-2) indicated the potential for increased yields applying EDS. Crop competitiveness against weeds was higher in EDS than in NDS, especially early in the growing season. The results highlight the importance of EDS as a valuable tool for pesticide-free, non-organic cropping systems through positive effects on crop yield and efficient weed control.

Protein homeostasis and cell wall remodeling in response to jasmonate and gibberellin signals improve flood tolerance in soybean (Glycine max L.)

The establishment of soybean seedlings is sensitive to flooding, and colocalization of proteins and quantitative trait loci (QTLs) advances to narrow down the hub genes. To reveal soybean seedling tolerance to flooding, Qihuang34 (QH34), Jidou17(JD17), and their recombinant inbred lines were used in this study. Severe plant death, shorter root length, and more stress-induced proteins were observed in JD7 compared to QH34 under flooding. The major functional categories of proteins altered by flooding were similar in both cultivars, and formed a cohesive network. Protein abundance and gene expression of ribosomal protein S3 decreased in flooded JD17 compared to QH34. Through proteomics and QTL mapping, beta-glucosidase 44 and dehydrin were involved in flood tolerance. Beta-glucosidase 44 abundance, beta-glucosidase activity, and glucose content decreased in QH34 compared to JD17 during flooding. The dehydrin contained the cis-acting elements of methyl jasmonate (Me-JA) and gibberellin (GA), accompanied by increased levels of Me-JA and GA3 in flooded QH34 and JD17, respectively. These findings suggest that integrating proteomics with QTL is advantageous to identify genes associated with flood tolerance, proposing that enhanced protein homeostasis and cell wall stiffening in root tips may confer soybean seedling tolerance to flooding via GA and JA signals.

The Effect of some Herbicides and Spraying Periods on the Growth and Weeds of a Soybean Crop (Glycin max L.)

The Effect of some Herbicides and Spraying Periods on the Growth and Weeds of a Soybean Crop (Glycin max L.)

Registration of high‐yielding, high‐protein soybean germplasm USDA‐N7007 derived from wild soybean PI 366122

AbstractUSDA‐N7007 is a non‐GM, maturity group (MG) VII soybean [Glycine max (L.) Merr.] (Reg. no. GP‐529, PI 705147) germplasm released by the USDA Agricultural Research Service in conjunction with the North Carolina Agricultural Research Service in December of 2023. USDA‐N7007 is a high‐yielding, high‐protein germplasm derived from wild soybean (Glycine soja Siebold & Zucc; PI 366122) and small‐seeded MG VII USDA cultivar N7103. Over 47 combined testing environments of the USDA Southern Uniform and USB Protein Diversity Tests (2018–2021), USDA‐N7007 yielded 98% of the check mean and 102% of the test mean. The average protein content of USDA‐N7007 was significantly higher (432 g kg−1) than the average check means of 402 g kg−1 and 413 g kg−1 in the USDA Southern Uniform and USB Protein Diversity Tests, respectively. Across both tests (2019–2021), the release was significantly (p < 0.05) higher in protein (+7 g kg−1), with 9% higher seed yield (+242 kg ha−1) than the recurrent parent N7103. USDA‐N7007 is resistant to lodging, southern root‐knot nematode, and stem canker. To the best of our knowledge, this is the first US release clearly demonstrating that the wild soybean genome can be incorporated into an elite cultivar to increase seed protein without a negative effect on seed yield. This release is a truly novel and valuable resource for development of future US soybean cultivars because it will be useful to improve both genetic diversity and seed protein simultaneously without a negative effect on seed yield.

Delayed photosynthesis response causes carbon assimilation reduction in soybean under fluctuating light

Plants experience dynamic light environments in the field, and the mechanisms for physiological and biochemical acclimation to fluctuating light (FL) vary among species. How soybean (Glycine max (L.) Merr.) integrates multiple physiological changes to acclimate to FL remains unclear. This study evaluated the impact of FL conditions on soybean morphology and photosynthetic characteristics by analyzing changes in photosynthetic gas exchange parameters and chlorophyll (Chl) a fluorescence parameters under alternating high and low light conditions. Results showed that soybeans subjected to FL conditions had low dry matter mass, small and thin leaves, and a low Chl a to Chl b ratio, resembling the traits of soybeans grown in low-light environments. However, their photosynthetic gas exchange rates and photosynthetic capacity remained constant, which was not the case under consistent low-light conditions. The adaptation processes for fluctuating and lowlight conditions are distinct. Correlation analyses indicated that the drop in carbon assimilation under FL primarily resulted from two aspects: the speed of recovery in stomatal conductance when transitioning to bright light and the slow relief of nonphotochemical quenching as light levels decreased. Thus, the decrease in carbon assimilation under FL conditions cannot be ascribed to adjustments during low-light phases but is due to a lag in photosynthetic response.

Mechanisms of Lanthanum-mediated mitigation of salt stress in soybean (Glycine max L.).

Salinity is considered one of the abiotic stresses that have the greatest impact on soybean production worldwide. Lanthanum (La) is a rare earth element that can reduce adverse conditions on plant growth and productivity. However, the regulatory mechanism of La-mediated plant response to salt stress has been poorly studied, particularly in soybeans. Therefore, our study investigated the mechanisms of La-mediated salt stress alleviation from the perspectives of the antioxidant system, subcellular structure, and metabolomics responses. The results indicated that salt stress altered plant morphology and biomass, resulting in an increase in peroxidation, inhibition of photosynthesis, and damage to leaf structure. Exogenous La application effectively promoted the activity of superoxide dismutase (SOD) and peroxidase (POD), as well as the soluble protein content, while decreasing the Na+ content and Na+/K+ ratio in roots and leaves, and reducing oxidative damage. Moreover, transmission electron microscopy (TEM) demonstrated that La prevented the disintegration of chloroplasts. Fourier-transform infrared spectroscopy (FTIR) analysis further confirmed that La addition mitigated the decline in protein, carbohydrates, and pectin levels in the leaves. Lanthanum decreased the leaf flavonoid content and synthesis by inhibiting the content of key substances in the phenylalanine metabolism pathway during NaCl exposure. Collectively, our research indicates that La reduces cell damage by regulating the antioxidant system and secondary metabolite synthesis, which are important mechanisms for the adaptive response of soybean leaves, thereby improving the salt tolerance of soybeans.

The bZIP gene family in the halophyte Limonium bicolor: Identification, expression analysis, and regulation of salt stress tolerance

The basic region/leucine zipper transcription factors (bZIPs) are one of the largest transcription factor families in eukaryotes, and play a key role in growth, development, and response to abiotic stresses. Limonium bicolor is a typical recretohalophyte, which can excrete excess salts from body to outside through the salt glands located on the stems and leaves to maintain ionic balance in the body. In this study, 58 L. bicolor bZIP members (LbbZIP1–58) were identified, which were unevenly distributed on 8 chromosomes and divided into 11 groups. The bioinformatics analysis revealed strong colinearity between LbbZIPs and GmbZIPs of soybean (Glycine max). And promoter cis-acting elements of LbbZIPs were related to stress responses and phytohormone responses. Most LbbZIP members responded to abiotic stresses such as NaCl, PEG, and ABA. Silencing LbbZIP28 in L. bicolor increased salt glands density and salt secretion capacity of leaves, and salt tolerance by means of up-regulating the expression levels of genes involved in salt gland development and ion transport. These results provide new information for LbbZIPs and help to interpret salt gland development and salt secretion in L. bicolor. Our results will provide a reference for a deeper understanding of the molecular foundation of LbbZIPs in L.bicolor.

Exploring selection signatures in the divergence and evolution of lipid droplet (LD) associated genes in major oilseed crops

BackgroundOil bodies or lipid droplets (LDs) in the cytosol are the subcellular storage compartments of seeds and the sites of lipid metabolism providing energy to the germinating seeds. Major LD-associated proteins are lipoxygenases, phospholipaseD, oleosins, TAG-lipases, steroleosins, caleosins and SEIPINs; involved in facilitating germination and enhancing peroxidation resulting in off-flavours. However, how natural selection is balancing contradictory processes in lipid-rich seeds remains evasive. The present study was aimed at the prediction of selection signatures among orthologous clades in major oilseeds and the correlation of selection effect with gene expression.ResultsThe LD-associated genes from the major oil-bearing crops were analyzed to predict natural selection signatures in phylogenetically close-knit ortholog clusters to understand adaptive evolution. Positive selection was the major force driving the evolution and diversification of orthologs in a lineage-specific manner. Significant positive selection effects were found in 94 genes particularly in oleosin and TAG-lipases, purifying with excess of non-synonymous substitution in 44 genes while 35 genes were neutral to selection effects. No significant selection impact was noticed in Brassicaceae as against LOX genes of oil palm. A heavy load of deleterious mutations affecting selection signatures was detected in T-lineage oleosins and LOX genes of Arachis hypogaea. The T-lineage oleosin genes were involved in mainly anther, tapetum and anther wall morphogenesis. In Ricinus communis and Sesamum indicum > 85% of PLD genes were under selection whereas selection pressures were low in Brassica juncea and Helianthus annuus. Steroleosin, caleosin and SEIPINs with large roles in lipid droplet organization expressed mostly in seeds and were under considerable positive selection pressures. Expression divergence was evident among paralogs and homeologs with one gene attaining functional superiority compared to the other. The LOX gene Glyma.13g347500 associated with off-flavor was not expressed during germination, rather its paralog Glyma.13g347600 showed expression in Glycine max. PLD-α genes were expressed on all the tissues except the seed,δ genes in seed and meristem while β and γ genes expressed in the leaf.ConclusionsThe genes involved in seed germination and lipid metabolism were under strong positive selection, although species differences were discernable. The present study identifies suitable candidate genes enhancing seed oil content and germination wherein directional selection can become more fruitful.

A Potential Anticancer Property of Fermented and Unfermented Soybeans in Human Colorectal Adenocarcinoma Cell Line

A Potential Anticancer Property of Fermented and Unfermented Soybeans in Human Colorectal Adenocarcinoma Cell Line

Assessing the environmental footprint of alternative green biorefinery protein extraction techniques from grasses and legumes

The significant grasslands of Europe and its member states represents a significant feedstock opportunity for circular bioeconomy development. The development of green biorefineries (GBR), to supply protein for the feed industry from grass, could help many European member states to address significant deficits in protein availability and reduce imports. The current study assesses the environmental footprint of alternative GBR protein extraction techniques from grasses and legumes using life cycle assessment. The focus is on comparing feedstock and technology pathways that could displace soya bean imports. The study finds that leaf protein concentrate (LPC) produced from grass had an improved environmental performance when compared to soya bean meal (SBM), across the assessed feedstock (perennial ryegrass or grass-clover mixtures) and technology pathways (one-stage maceration versus multi-stage maceration). For example, in the case of Climate Change the emission intensity for LPC was 57–85 % lower per tonne of crude protein (CP) compared with SBM. Acidification burdens were 54–88 % lower, and Eutrophication: Freshwater burdens were 74–89 % lower. Some scenarios of GBR produced LPC with a larger Energy Resources: Non-Renewable burden than SBM, though this could be mitigated with higher renewable energy (biogas and wind energy) integration within the scenario. Grass-clover scenarios generally achieved a lower intensity of emissions compared to ryegrass scenarios, particularly in the category of Climate Change, where feedstock cultivation represented a significant contributor to impacts. Overall, GBR can produce high quality protein with a lower environmental burden than SBM, but choice of feedstock and system design are critical factors for overall environmental performance.

Genome-wide analysis of soybean hypoxia inducible gene domain containing genes: a functional investigation of GmHIGD3.

The response of Hypoxia Inducible Gene Domain (HIGD) proteins to hypoxia plays a crucial role in plant development. However, the research on this gene family in soybean has been lacking. In this study, we aimed to identify and comprehensively analyze soybean HIGD genes using the Glycine max genome database. As a result, six GmHIGD genes were successfully identified, and their phylogeny, gene structures, and putative conserved motifs were analyzed in comparison to Arabidopsis and rice. Collinearity analysis indicated that the HIGD gene family in soybean has expanded to some extent when compared to Arabidopsis. Additionally, the cis-elements in the promoter regions of GmHIGD and the transcription factors potentially binding to these regions were identified. All GmHIGD genes showed specific responsiveness to submergence and hypoxic stresses. Expression profiling through quantitative real-time PCR revealed that these genes were significantly induced by PEG treatment in root tissue. Co-expressed genes of GmHIGD were primarily associated with oxidoreductase and dioxygenase activities, as well as peroxisome function. Notably, one of GmHIGD genes, GmHIGD3 was found to be predominantly localized in mitochondria, and its overexpression in Arabidopsis led to a significantly reduction in catalase activity compared to wild-type plants. These results bring new insights into the functional role of GmHIGD in terms of subcellular localization and the regulation of oxidoreductase activity.

Diversity, abundance, and domain architecture of plant NLR proteins in Fabaceae

The resistance (R) gene family in plants is a vital component of the plant defense system, enabling host resistance against pathogens through interactions with pathogen effector proteins. These R genes often encode nucleotide-binding (NB-ARC or N) and leucine-rich-repeat (LRR or L) domains, collectively forming the NLR protein family. The NLR proteins have been widely explored in crops from Poaceae and Brassicaceae, but limited studies are available for crops in other families, including Fabaceae. To address this gap, we conducted a comprehensive genome-wide analysis of putative NLR proteins in nine Fabaceae crops, including Glycine max, Lupinus angustifolius, Medicago truncatula, Pisum sativum, Phaseolus vulgaris, Trifolium pratense, Vigna angularis, Vigna radiata, and Vigna unguiculata. Our study revealed a substantial variation in the number of NLR proteins, independent of genome size. Notably, the NB-ARC domain exhibited a preferential co-occurrence with a specific LRR domain (IPR001611) in Fabaceae. Furthermore, through protein signature analysis, we identified both species-specific and shared domains across the nine crops. By classifying the identified proteins into seven distinct classes (N, L, CN, TN, NL, CNL, and TNL), we observed species-specific clustering within the CN, TN, and CNL classes, reflecting the diversification of species within Fabaceae. This genome-wide study enhances our understanding of the NLR protein repertoire and comprehensive protein signatures in nine Fabaceae species and provides valuable insights into plant defense mechanisms.

Alleviation of drought stress damages by melatonin and Bacillus thuringiensis associated with adjusting photosynthetic efficiency, antioxidative system, and anatomical structure of Glycine max (L.)

These experiments were performed to study the effect of exogenous treatment with melatonin at 100 μM and seed treatment with Bacillus thuringiensis (106−8 CFU/cm3) on growth, physio-biochemical characters, antioxidant enzymes, and anatomical features of soybean plants cv. Giza 111 under drought conditions. The findings showed that leaves number, nodules number, branches number, relative water content (RWC), chlorophyll content, and maximum quantum efficiency of PSII (Fv/Fm) were significantly reduced in soybean under drought stress. In addition, anatomical structure of stems and leaves were negatively affected in stressed plants. Moreover, proline, electrolyte leakage (EL%) lipid peroxidation (MDA), superoxide (O2·-), hydrogen peroxide (H2O2), and antioxidant enzymes, such as catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD), were significantly increased under drought stress. However, application of melatonin or Bacillus caused an improvement in growth characters, such as branches number, and increased chlorophyll a and b content, RWC as well as Fv/Fm in drought stressed soybean plants. Furthermore, melatonin and Bacillus treatments showed a significant decrease in EL%, MDA, O2·- and H2O2, besides regulating the activity of antioxidant enzymes under drought stress. The stems and leaves anatomical structure, such as lamina thickness, lower and upper epidermis thickness, number of xylem vessels/bundle, stem diameter, xylem vessels diameter, and phloem thickness, were improved under drought conditions with melatonin and Bacillus treatments. Therefore, the outcomes of this investigation recommended the use of melatonin as foliar spray and Bacillus thuringiensis as seed treatment, which could regulate a number of stress-responsive mechanisms to protect the stressed soybean plants, improve their growth under drought stress.

Identification of fermented soy sauce and blended soy sauce based on dielectric spectra

A new method based on dielectric properties has been developed to distinguish blended soy sauce from fermented soy sauce. Fifty samples of pure fermented soy sauce and blended soy sauce with different contents of hydrolyzed vegetable protein (HVP) were prepared. The dielectric constant and dielectric loss factor of all soy sauce samples in the 30 MHz–3000 MHz frequency range were measured using an impedance analyzer. The sample set was divided into a correction set and a prediction set using the joint x-y distances (SPXY) algorithm, and the partial least squares (PLS) and support vector machine (SVM) models were adopted to distinguish the different samples. The effects of selecting characteristic variables on model prediction using the full spectra (FS), principal component analysis (PCA), and successive projection algorithm (SPA) were compared. Results indicate that the discriminant effect of the PLS model was better than that of the SVM model overall. The SPA–PLS model had the best predictive performance among the six developmental models. The correlation coefficients of the correction set and prediction set were 0.9205 and 0.9096, respectively. The root mean square error of the calibration set was 1.3699 and that of the prediction set was 1.5950. The study demonstrated that the combination of dielectric spectra and stoichiometry can be utilized to determine whether soy sauce has been adulterated.

Studies on synergistic interaction of different sources and levels of sulphur on growth of black soybean

Studies on synergistic interaction of different sources and levels of sulphur on growth of black soybean

The Effect of Adding Nutrients to Rice Washing Waste Water on Growth Results of Yellow Soybean Plant Microgreens (Glycine max (L.) Merill)

Soybeans contain many vitamins and minerals and are low in saturated fatty acids. Food ingredients derived from soybeans are also free from lactose, making them suitable for consumers who suffer from lactose intolerance. It is impossible to separate microgreens growth from their requirement for nutrients and water. Since microgreens are organic, chemical fertilizers are not used to them. Rice washing waste water is one substitute that can be utilized as fertilizer for microgreen plants. The purpose of this study is to ascertain the optimal concentration for maximizing the growth and yield of yellow soybean microgreens (Glycine max) and the impact of giving waste rice washing water on these microgreens. This study conducts quantitative research using an experimental design. A non-factorial randomized block design (RAK) was employed to collect the data, with concentration being the primary variable (P0: Control, P1: 50 ml rice washing water, P2: 100 ml rice washing water, P3: 150 ml rice washing water). Plant height, plant dry weight, plant wet weight, and chlorophyll levels are all significantly impacted by the availability of rice washing water, according to the research findings. The amount of leaves was unaffected by the presence of rice washing water. Plant height, dry weight, wet weight, and chlorophyll content can all be increased with P1 in as much as 50 milliliters of rice washing water.