Soybean Research Articles

First Report of Chili Anthracnose Caused by Colletotrichum sojae in South Korea.

Chili (Capsicum annuum L.) is an economically important crop worldwide, valued for its culinary uses. In South Korea, anthracnose caused by Colletotrichum spp. including C. truncatum, C. gloeosporioides, C. coccodes, C. acutatum, and C. scovillei incurs on substantial economic loss (Kim et al. 2008; Oo and Oh 2020). In August 2022, somewhat different types of symptoms that was not typical on chilli fruits were observed in a field in Yereonggwang (GPS: 35.2579° N, 126.4742° E), South Korea. The disease symptoms appeared as sunken, necrotic lesions with dense black spore masses forming in concentric rings. The estimated disease incidence the 0.2 ha field showing up to 1% of fruits affected. To isolate the pathogen, six symptomatic chilli fruits were collected. Small pieces (5 mm²) were cut from the margins of the lesions, surface-sterilized in 70% ethanol for 30 sec, followed by 1% sodium hypochlorite for 1 minute, and then rinsed three times in sterile distilled water. The tissue pieces were placed on potato dextrose agar (PDA) plates and incubated at 25°C in the dark. After 3 to 5 days, emerging fungal colonies were sub-cultured to obtain pure isolates. A total of five isolates were obtained and initially identified as Colletotrichum spp. based on morphological characteristics. Seven-day old colonies were initially white, turning light orange with age on PDA. Setae (observed on lesion) were dark brown, verruculose and septate. Conidia were cylindrical, hyaline, and measured 14.8 to 19.9 × 4.2 to 6.5 µm (mean 16.7 × 5.6 μm, n = 70) in size; appressoria were brown to dark brown and irregularly shaped. These morphological characteristics of the isolates agree with those reported for the morphology of C. sojae by Damm et al. (2019). To confirm the identity of the isolates, DNA was extracted and specific gene regions were amplified and sequenced using the following primer sets: ITS (ITS1 and ITS4), GAPDH (GDF1 and GDR1), ACT (ACT-512F and ACT-783R), TUB (T1 and Bt2b), HIS3 (CYLH3F and CYLH3R), and CHS-1 (CHS-79F and CHS-345R). The resulting sequences were deposited in the NCBI GenBank with accession numbers (LC830742 to LC830766). Maximum likelihood phylogenetic analysis using combine sequences of ITS, GAPDH, ACT, TUB, HIS3 and CHS-1 in MEGA X confirmed the isolates as C. sojae, marking the first report of this pathogen on chilli in South Korea, previously known to infect soybean. Pathogenicity tests were conducted on wound and nonwounded healthy and mature-green chili fruits (cv. Bicksita) to confirm the pathogenicity of the isolated C. sojae. The fruits were surface-sterilized using 70% ethanol and then rinsed with sterile distilled water. The fruits were wounded using a sterile needle to facilitate infection. A conidial suspension (1x106 conidia/mL) was prepared from 7-day-old PDA cultures. Each fruit was inoculated by placing a 10 µL drop of the conidial suspension onto the wounded and nonwounded sites (4 to 5) of the wound and unwound fruits, respectively. Control fruits were inoculated with sterile water. A total of 40 fruits per treatment were used and the experiment repeated twice. The fruits were placed in plastic box lined with moist paper towels to maintain high humidity and incubated at 25°C. Anthracnose symptoms developed on the inoculated fruits within 7 days, while control and unwounded fruits remained symptom-free. Colletotrichum sojae was successfully reisolated from the symptomatic fruits, fulfilling Koch's postulates and confirming its role as the causal agent of the disease. Colletotrichum sojae is known to infect Fabaceae species worldwide such as Glycine max, Medicago sativa, Phaseolus vulgaris, Atractylodes ovata and Vigna unguiculata (Damm et al. 2019; Talhinhas and Baroncelli 2021), Atractylodes ovata in South Korea (Hassan et al. 2021) and chili pepper in China (Zhanget al. 2023). The first report of C. sojae causing chili anthracnose in South Korea represents a new challenge for chili growers. Integrated disease management strategies need to be developed and implemented to mitigate its impact.

The LTAR Cropland Common Experiment at Upper Mississippi River Basin-St. Paul.

The Soil and Water Management Research Unit of the USDA-Agricultural Research Service is located in St. Paul, MN, and conducts long-term research at the University of Minnesota Research and Outreach Center located at Rosemount, MN. As part of USDA's Long-Term Agroecosystem Research (LTAR) network, the croplands common experiment (CCE) at this location is focused on integration of a kura clover (Trifolium ambiguum M. Bieb.) living mulch (KCLM) system into the prevailing 2-year rotation of corn (Zea mays L.) and soybean (Glycine max L.) that is typical of the midwestern Corn Belt. The LTAR-CCE conducted at Rosemount, MN, aims to compare the long-term environmental and agronomic performance of KCLM while identifying challenges and developing management strategies for this alternative practice. The use of a living mulch for this region is advantageous because, once established, it does not require additional time for fall field operations typically associated with winter cover crops. Results from LTAR-CCE studies at this site show that KCLM results in a substantial increase in soil field-saturated hydraulic conductivity and decreases in leaching of nitrate-nitrogen (NO3 --N). Disadvantages of the KCLM system include potential for increased emissions of nitrous oxide (N2O) and reduced crop yields, particularly during drought. Also, the optimal approach for crop row establishment in the spring remains uncertain. Ongoing LTAR-CCE research with KCLM aims to better understand and quantify both benefits and risks across conditions of interannual weather variability and changing climate to develop guidance for suitable adoption and management of this alternative practice.

Molecular Regulation of Shoot Architecture in Soybean.

Soybean (Glycine max [L.] Merr.) serves as a major source of protein and oil for humans and animals. Shoot architecture, the spatial arrangement of a plant's above-ground organs, strongly affects crop yield and is therefore a critical agronomic trait. Unlike wheat and rice crops that have greatly benefitted from the Green Revolution, soybean yield has not changed significantly in the past six decades owing to its unique shoot architecture. Soybean is a pod-bearing crop with pods adhered to the nodes, and variation in shoot architecture traits, such as plant height, node number, branch number and number of seeds per pod, directly affects the number of pods and seeds per plant, thereby determining yield. In this review, we summarize the relationship between soybean yield and these major components of shoot architecture. We also describe the latest advances in identifying the genes and molecular mechanisms underlying soybean shoot architecture and discuss possible directions and approaches for breeding new soybean varieties with ideal shoot architecture and improved yield.

The soybean NUCLEAR FACTOR-Y C4 and α-EXPANSIN 7 module influences phosphorus uptake by regulating root morphology

Abstract Soybean (Glycine max) is a globally important crop; however, its productivity is severely impacted by phosphorus (P) deficiency. Understanding the transcriptional regulation of low P (LP) response mechanisms is essential for enhancing soybean P use efficiency. In this study, we found that the Nuclear Factor-Y (NF-Y) transcription factor GmNF-YC4, in addition to its previously discovered role in regulating flowering time, possesses other functions in modulating root morphology and P uptake. Knockout of GmNF-YC4 notably boosted root proliferation and P uptake while also influencing the expression of genes related to LP stress. GmNF-YC4 acts as a specific DNA-binding transcriptional repressor, modulating the expression of the soybean α-EXPANSIN 7 (GmEXPA7) gene, which encodes a cell-wall-loosening factor, through direct binding to its promoter region. Further investigation revealed that GmEXPA7 expression is predominantly root-specific and induced by LP. Moreover, overexpression of GmEXPA7 in soybean hairy roots enhanced LP tolerance by stimulating root growth and P uptake. We further screened and obtained more potential target genes of GmNF-YC4 via DNA affinity purification sequencing, including those related to LP stress. These findings underscore the pivotal role of the GmNF-YC4-GmEXPA7 module as a key regulator in mitigating LP stress in soybeans.

Morphological, physiological, and biochemical responses of three different soybean (Glycine max L.) varieties under salinity stress conditions.

Salinity is one of the most detrimental factors for the growth performance and productivity of crops worldwide. Therefore, understanding crop responses or growth potentials and their effectiveness in salinity mitigation is highly important for the selection of salinity-tolerant plant varieties. In this study, the effects of salinity at various stress levels (0 mM, 50 mM, 100 mM, and 150 mM NaCl) on the morphological, physiological, and biochemical parameters of three soybean varieties ('Afigat', 'Gishama', and 'Pawi-2') were investigated. The results showed that salinity significantly reduced morphological traits including plant height, number of leaves per plant, stem thickness, shoot and root length, and fresh and dry weight. This reduction was more prominent in the 'Afigat' variety for all of these traits except shoot and root length. The concentrations of chlorophyll a and b decreased with increasing salinity. In addition, salinity significantly increased leaf electrolyte leakage (EL), lipid peroxidation, proline accumulation, and phenol and flavonoid content. The 'Pawi-2' variety was more tolerant than the other studied varieties in terms of membrane stability (less EL and a low malondialdehyde content) and proline, phenol, and flavonoid accumulation. Therefore, 'Pawi-2' may be considered as the most salt-tolerant variety in comparison with the other studied soybean varieties. Further complementary studies in field conditions including anatomical parameters are needed to confirm these findings.

8-Prenylgenistein Isoflavone in Cheonggukjang Acts as a Novel AMPK Activator Attenuating Hepatic Steatosis by Enhancing the SIRT1-Mediated Pathway.

8-Prenylgenistein (8PG), a genistein derivative, is present in fermented soybeans (Glycine max), including cheonggukjang (CGJ), and exhibits osteoprotective, osteogenic, and antiadipogenic properties. However, the hepatoprotective effects of 8PG and its underlying molecular mechanisms remain largely unexplored. Here, we identified the high binding affinity of 8PG with AMP-activated protein kinase (AMPK) and sirtuin 1 (SIRT1), which acts as a potent AMPK activator that counteracts hepatic steatosis. Notably, 8PG exhibited better pharmacokinetics with greater absorption and higher plasma binding than the positive controls for the target proteins. Moreover, 8PG exerted non-carcinogenic activity in rats and significantly increased AMPK phosphorylation. Compound C, an AMPK inhibitor, did not antagonize 8PG-activated AMPK in HepG2 cells. 8PG significantly attenuated palmitate-induced lipid accumulation and enhanced phosphorylated AMPK and its downstream target, acetyl-CoA carboxylase. Further, 8PG activated nuclear SIRT1 at the protein level, which promoted fatty acid oxidation in palmitate-treated HepG2 cells. Overall, 8PG acts as a potent AMPK activator, further attenuating hepatic steatosis via the SIRT1-mediated pathway and providing new avenues for dietary interventions to treat metabolic dysfunction-associated steatotic liver disease (MASLD).

Effects of Organic Compost and Trichoderma harzianum Spores on Soil Fertility and Agronomic Performance of Soybean (Glycine max (L.) Merr.)

Effects of Organic Compost and Trichoderma harzianum Spores on Soil Fertility and Agronomic Performance of Soybean (Glycine max (L.) Merr.)

Traditionally produced tempeh harbors more diverse bacteria with more putative health-promoting properties than industrially produced tempeh

In recent years, there has been a significant shift towards industrialization in food production, resulting in the implementation of higher hygiene standards globally. Our study focused on examining the impact of hygiene standards on tempeh, a popular Rhizopus-based fermented soybean product native to Indonesia, and now famous around the world. We observed that tempeh produced with standardized hygiene measures exhibited a microbiome with comparable bacterial abundances but a markedly different community structure and function than traditionally produced tempeh. In detail, we found a decreased bacterial abundance of lactobacilli and enterobacteria, bacterial diversity, different indicator taxa, and significantly changed community structure in industrial tempeh. A similar picture was found for functional analysis: the quantity of bacterial genes was similar but qualitative changes were found for genes associated with human health. The resistome of tempeh varied based on its microbiome composition. The higher number of antimicrobial resistance genes in tempeh produced without standardized hygiene measures mainly belong to multidrug efflux pumps known to occur in plant-based food. Our findings were confirmed by functional insights into genomes and metagenome-assembled genomes from the dominant bacteria, e.g. Leuconostoc, Limosilactobacillus, Lactobacillus, Enterococcus, Paenibacillus, Azotobacter and Enterobacter. They harboured an impressive spectrum of genes important for human health, e.g. for production of vitamin B1, B7, B12, and K, iron and zinc transport systems and short chain fatty acid production. In conclusion, industrially produced tempeh harbours a less diverse microbiome than the traditional one. Although this ensures production at large scales as well as biosafety, in the long-term it can lead to potential effects for human gut health.

Genome-Wide Identification of the Soybean AlkB Homologue Gene Family and Functional Characterization of GmALKBH10Bs as RNA m6A Demethylases and Expression Patterns under Abiotic Stress.

Soybean (Glycine max (L.) Merr) is one of the most important crops worldwide, but its yield is vulnerable to abiotic stresses. In Arabidopsis, the AlkB homologue (ALKBH) family genes plays a crucial role in plant development and stress response. However, the identification and functions of its homologous genes in soybean remain obscured. Here, we identified a total of 22 ALKBH genes in soybean and classified them into seven subfamilies according to phylogenetic analysis. Gene duplication events among the family members and gene structure, conserved domains, and motifs of all candidate genes were analyzed. By comparing the changes in the m6A levels on mRNA from hair roots between soybean seedlings harboring the empty vector and those harboring the GmALKBH10B protein, we demonstrated that all four GmALKBH10B proteins are bona fide m6A RNA demethylases in vivo. Subcellular localization and expression patterns of the GmALKBH10B revealed that they might be functionally redundant. Furthermore, an analysis of cis-elements coupled with gene expression data demonstrated that GmALKBH10B subfamily genes, including GmALKBH10B1, GmALKBH10B2, GmALKBH10B3, and GmALKBH10B4, are likely involved in the cis-elements' response to various environmental stimuli. In summary, our study is the first to report the genome-wide identification of GmALKBH family genes in soybean and to determine the function of GmALKBH10B proteins as m6A RNA demethylases, providing insights into GmALKBH10B genes in response to abiotic stresses.

Foraging of Honeybees from Different Ecological Areas Determined through Melissopalynological Analysis and DNA Metabarcoding.

The environment significantly impacts the lives of bees and their feeding. This study aimed to investigate bee foraging using melissopalynological analysis and DNA metabarcoding in intensive farming, reserved, and urbanized areas. The highest alpha diversity was observed in the reserved and intensive farming areas. The urbanized area had less diversity. In the intensive farming area, Sinapis, Helianthus, and Fagopyrum predominated; in the reserved area, Melilotus, Helianthus, and Brassica predominated. In the urbanized area, garden plants, namely radish (Raphanus sativus) and cucumber (Cucumis hystrix), and agricultural plants, namely soybean (Glycine max) and melon (Cucumis melo), were often found. The most significant agreement was between the rbcL and the melissopalynological analysis. The ITS2 revealed equal matches with both rbcL and melissopalynology, but this marker missed or underestimated some genera. Trifolium pretense and Brassica nigra were identified simultaneously by the melissopalinology method and two genetic markers in DNA metabarcoding. The species Convolvulus arvensis, Melilotus officinalis, Echium vulgare, Brassica rapa, Helianthus divaricatus, and Onobrychis viciifolia were found in all ecological areas. Imperfect databases impose some limits in the identification of some taxa using metabarcoding. The further research and expansion of plant databases is needed. Studying the food preferences of bees in different environmental conditions and landscapes is necessary to develop measures to preserve their populations.

Effects of titanium oxide nanoparticles and 24-epibrassinosteroid to mitigate the toxicity of cadmium (Cd) and improve physio-morphological traits of soybean (Glycine max L.) cultivated under Cd-contaminated soil

Cadmium (Cd) toxicity is a serious environmental threat to living organisms. Nanoparticles (NPs) and plant growth regulators are able to mitigate Cd toxicity and restore crop growth in heavy metals-contaminated soils. However, the synergistic potential of combining 24-epibrassinosteroid (24-epiBRs) and titanium oxide nanoparticles (TiO2-NPs) to alleviate Cd toxicity and restore soybean (Glycine max L.) production remains unexplored. Thus, a pot-based experimental trial was conducted to assess the effects of applying TiO2-NPs (15 mg L−1) and 24-epiBRs (10−7 M), individually and in combination, on soybean growth in soil cultivated with 30 ppm of Cd. The study revealed that Cd toxicity significantly inhibited soybean root length (11.0 %), root dry biomass (63.5 %), root fresh biomass (84.9 %), shoot length (11.7 %), shoot dry biomass (49.0 %), and shoot fresh biomass (27.3 %), compared to the control. Additionally, the toxicity of Cd enhanced the oxidative stress and lowered the photosynthetic efficiency, gas exchange characteristics, and antioxidant defense system of soybeans. Interestingly, the combined application of TiO2-NPs and 24-epiBRs ameliorated the Cd toxic effects and improved the agronomic traits, photosynthesis efficiency, and antioxidant activity in soybeans by lowering oxidative stress. Specifically, the dual application of 24-epiBRs and TiO2-NPs effectively lowered the Cd levels in roots, shoots, and leaves of soybean plants by 62.5, 162.7, and 87.1 %, respectively, relative to the control soybean plants grown under Cd stress. Overall, the combined treatment of TiO2-NPs and 24-epiBRs synergistically reduced Cd uptake and restored soybean physiology in Cd-contaminated soils. Moving forward, further research should include field trials to assess the effectiveness and economic viability of this novel method.

A conserved protein family in mirid bug Riptortus pedestris plays dual roles in regulating plant immunity.

The mirid bug (Riptortus pedestris), a major soybean pest, migrates into soybean fields during the pod filling stage and causes staygreen syndrome, which leads to substantial yield losses. The mechanism by which R. pedestris elicits soybean (Glycine max) defenses and counter-defenses remains largely unexplored. In this study, we characterized a protein family from R. pedestris, designated Riptortus pedestris HAMP 1 (RPH1) and its putative paralogs (RPH1L1, 2, 3, 4, and 5), whose members exhibit dual roles in triggering and inhibiting plant immunity. RPH1 and RPH1L1 function as herbivore-associated molecular patterns (HAMPs), activating pattern-triggered immunity (PTI) in tobacco (Nicotiana benthamiana) and G. max. Furthermore, RPH1 stimulates jasmonic acid and ethylene biosynthesis in G. max, thereby enhancing its resistance to R. pedestris feeding. Additionally, RPH1 homologs are universally conserved across various herbivorous species, with many homologs also acting as HAMPs that trigger plant immunity. Interestingly, the remaining RPH1 putative paralogs (RPH1L2-5) serve as effectors that counteract RPH1-induced PTI, likely by disrupting the extracellular perception of RPH1. This research uncovers a HAMP whose homologs are conserved in both chewing and piercing-sucking insects. Moreover, it unveils an extracellular evasion mechanism utilized by herbivores to circumvent plant immunity using functionally differentiated paralogs.

Enhancing soybean cultivation sustainability: impact of limestone mining co-products on soil and plant chemical attributes

The increasing demand for sustainable agricultural practices necessitates innovative solutions for soil fertilization. This study aimed to assess the viability of using limestone mining co-products from the Irati and Corumbataí Formations as multi-nutrient sources for Glycine max cultivation. The experiment utilized a double factorial design (7 × 2) with five replications, randomly arranged and placed in pots within a greenhouse. The factors examined were the type of co-product (sedimentary rocks from the Irati Formation: rhythmite and bituminous shale; and the Corumbataí Formation: clayey siltstone) and the soil type (Haplic Arenosol and Rhodic Ferralsol). Soil ion content was assessed at 21 and 140 days after treatment application. Each pot housed four G. max plants, with leaf harvest occurring after 42 days of growth. Macronutrient content, leaf production, and soil ion availability were determined thereafter. Overall, co-product application led to increased soil pH and availability of essential ions, including K+, Mg2+, Ca2+, P, S-SO42−, and Si. At 140 days, rhythmite was notably effective in increasing pH, Ca2+, and Mg2+ in Haplic Arenosol, with respective increases of 22%, 224%, and 696%. Bituminous shale, on the other hand, significantly increased S-SO42− content by 67% and 426% in Rhodic Ferralsol and Haplic Arenosol, respectively. Moreover, the application of co-products resulted in enhanced accumulation of K, Ca, Mg, and S in G. max plants, alongside increased leaf production. In conclusion, the utilization of mining co-products positively influenced soil and plant chemical attributes, particularly enhancing leaf production in G. max. These findings highlight the potential of co-products as environmentally friendly solutions for soil fertilization, supporting sustainable agricultural practices. This research highlights a significant step towards sustainable agriculture by recycling mining waste into valuable soil amendments, which can improve crop yields and reduce the environmental impact of both mining and agricultural activities.Graphical

Intakes of Dairy and Soy Products and 10-Year Coronary Heart Disease Risk in Korean Adults.

Dairy and soy products are healthy food. However, studies have reported conflicting results associating their intake with coronary heart disease (CHD). Thus, this study determined the association between intake of dairy or soy products and 10-year CHD risk. Participants aged 40~69 years were grouped into those who consumed dairy products (more or less than twice a week) and those who consumed soy products (more or less than twice a week). Ten-year CHD risk (%), atherogenic index (AI), and atherogenic index of plasma (AIP) were calculated. The CHD risk, according to the level of dairy and soy product intake, was expressed as an odds ratio (OR) and a confidence interval (CI). Significant differences were observed in sex, age, education, income, and living area according to dairy intake frequencies, whereas only age showed significant differences according to soy products' intake frequencies. Relative effects of Framingham Risk Score (FRS) factors on 10-year CHD risk in Korean adults were found to be significant in the order of age, high-density lipoprotein cholesterol (HDL-C), smoking, blood total cholesterol (TC), systolic blood pressure (SBP), diabetes, and sex. Overall, participants who consumed dairy products ≥2/week had a significantly lower OR of 10-year CHD risk compared to those who consumed dairy products <2/week after adjusting for confounding factors (OR: 0.742, 95% CI: 0.619 to 0.890). Otherwise, intake of soy products ≥2/week tended to decrease the OR of 10-year CHD risk, although the decrease was not statistically significant. In conclusion, Korean adults who consumed dairy products ≥2/week had higher HDL-C and lower 10-year CHD risk than those who consumed dairy products <2/week. However, these results did not appear when consuming soy products.

Differential symbiotic compatibilities between rhizobium strains and cultivated and wild soybeans revealed by anatomical and transcriptome analyses.

Various species of rhizobium establish compatible symbiotic relationships with soybean (Glycine max) leading to the formation of nitrogen-fixing nodules in roots. The formation of functional nodules is mediated through complex developmental and transcriptional reprogramming that involves the activity of thousands of plant genes. However, host transcriptome that differentiate between functional or non-functional nodules remain largely unexplored. In this study, we investigated differential compatibilities between rhizobium strains (Bradyrhizobium diazoefficiens USDA110 Bradyrhizobium sp. strain LVM105) and cultivated and wild soybeans. The nodulation assays revealed that both USDA110 and LVM105 strains effectively nodulate G. soja but only USDA110 can form symbiotic relationships with Williams 82. LVM105 formed pseudonodules on Williams 82 that consist of a central nodule-like mass that are devoid of any rhizobia. RNA-seq data revealed that USDA110 and LVM105 induce distinct transcriptome programing in functional mature nodules formed on G. soja roots, where genes involved in nucleosome assembly, DNA replication, regulation of cell cycle, and defense responses play key roles. Transcriptome comparison also suggested that activation of genes associated with cell wall biogenesis and organization and defense responses together with downregulation of genes involved in the biosynthesis of isoprenoids and antioxidant stress are associated with the formation of non-functional nodules on Williams 82 roots. Moreover, our analysis implies that increased activity of genes involved in oxygen binding, amino acid transport, and nitrate transport differentiates between fully-developed nodules in cultivated versus wild soybeans.

Soybean prediction using computationally efficient Bayesian spatial regression models and satellite imagery

AbstractPreharvest yield estimates can be used for harvest planning, marketing, and prescribing in‐season fertilizer and pesticide applications. One approach that is being widely tested is the use of machine learning (ML) or artificial intelligence (AI) algorithms to estimate yields. However, one barrier to the adoption of this approach is that ML/AI algorithms behave as a black block. An alternative approach is to create an algorithm using Bayesian statistics. In Bayesian statistics, prior information is used to help create the algorithm. However, algorithms based on Bayesian statistics are not often computationally efficient. The objective of the current study was to compare the accuracy and computational efficiency of four Bayesian models that used different assumptions to reduce the execution time. In this paper, the Bayesian multiple linear regression (BLR), Bayesian spatial, Bayesian skewed spatial regression, and the Bayesian nearest neighbor Gaussian process (NNGP) models were compared with ML non‐Bayesian random forest model. In this analysis, soybean (Glycine max) yields were the response variable (y), and spaced‐based blue, green, red, and near‐infrared reflectance that was measured with the PlanetScope satellite were the predictor (x). Among the models tested, the Bayesian (NNGP; R2‐testing = 0.485) model, which captures the short‐range correlation, outperformed the (BLR; R2‐testing = 0.02), Bayesian spatial regression (SRM; R2‐testing = 0.087), and Bayesian skewed spatial regression (sSRM; R2‐testing = 0.236) models. However, associated with improved accuracy was an increase in run time from 534 s for the BLR model to 2047 s for the NNGP model. These data show that relatively accurate within‐field yield estimates can be obtained without sacrificing computational efficiency and that the coefficients have biological meaning. However, all Bayesian models had lower R2 values and higher execution times than the random forest model.

Revolutionizing soybean genomics: How CRISPR and advanced sequencing are unlocking new potential.

Soybean Glycine max L., paleopolyploid genome, poses challenges to its genetic improvement. However, the development of reference genome assemblies and genome sequencing has completely changed the field of soybean genomics, allowing for more accurate and successful breeding techniques as well as research. During the single-cell revolution, one of the most advanced sequencing tools for examining the transcriptome landscape is single-cell RNA sequencing (scRNA-seq). Comprehensive resources for genetic improvement of soybeans may be found in the SoyBase and other genomics databases. CRISPR-Cas9 genome editing technology provides promising prospects for precise genetic modifications in soybean. This method has enhanced several soybean traits, including as yield, nutritional value, and resistance to both biotic and abiotic stresses. With base editing techniques that allow for precise DNA modifications, the use of CRISPR-Cas9 is further increased. With the availability of the reference genome for soybeans and the following assembly of wild and cultivated soybeans, significant chromosomal rearrangements and gene duplication events have been identified, offering new perspectives on the complex genomic structure of soybeans. Furthermore, major single nucleotide polymorphisms (SNPs) linked to stachyose and sucrose content have been found through genome-wide association studies (GWAS), providing important tools for enhancing soybean carbohydrate profiles. In order to open up new avenues for soybean genetic improvement, future research approaches include investigating transcriptional divergence processes, enhancing genetic resources, and incorporating CRISPR-Cas9 technologies.

Phosphate Turnover in Various Parts of Nodulated Soybean (Glycine max (L.) Merr.) Plants and the Relation to the Xylem Transport

Phosphorus is a major essential element in plants, and the absorption and transport of P are related to crop growth and productivity. Phosphate (Pi) is absorbed in the roots and transported to the shoot. Plants store surplus Pi in the vacuoles. The characteristics of Pi storage and turnover in various parts of the nodulated soybeans might be related to plant growth and P-use efficiency. This research focused on the changes in the Pi concentrations and Pi contents in each part of young soybean plants grown in Pi-sufficient (50 μM Pi) or Pi-deficient (0 μM Pi) conditions. Also, the Pi flux rate in xylem sap from roots to shoot was determined. The growth of the plants was the same after 7 days of Pi-sufficient and Pi-deficient treatments. During the Pi-deficient period, the Pi concentrations in the roots, leaves, and stems decreased significantly but did not deplete. The decrease in Pi concentration in nodules was much slower than the other parts. After the re-supply of 50 μM Pi in the solution, the Pi concentration increased only a little in each part of the Pi-deficient plants. The Pi concentration and Pi flux in the xylem sap quickly responded to the changes in the Pi concentration in the culture solution.

Identification of quantitative trait loci of pod dehiscence in a collection of soybean grown in the southeast of Kazakhstan.

Soybean [Glycine max (L.) Merr.] is one of the important crops that are constantly increasing their cultivation area in Kazakhstan. It is particularly significant in the southeastern regions of the country, which are currently predominant areas for cultivating this crop. One negative trait reducing yield in these dry areas is pod dehiscence (PD). Therefore, it is essential to understand the genetic control of PD to breed new cultivars with high yield potential. In this study, we evaluated 273 soybean accessions from different regions of the world for PD resistance in the conditions of southeastern regions of Kazakhstan in 2019 and 2021. The field data for PD suggested that 12 accessions were susceptible to PD in both studied years, and 32 accessions, in one of the two studied years. The genotyping of the collection using a DNA marker for the Pdh1 gene, a major gene for PD, revealed that 244 accessions had the homozygous R (resistant) allele, 14 had the homozygous S (susceptible) allele, and 15 accessions showed heterozygosity. To identify additional quantitative trait loci (QTLs), we applied an association mapping study using a 6K SNP Illumina iSelect array. The results suggested that in addition to major QTL on chromosome 16, linked to the physical location of Pdh1, two minor QTLs were identified on chromosomes 10 and 13. Both minor QTLs for PD were associated with calmodulin-binding protein, which presumably plays an important role in regulating PD in dry areas. Thus, the current study provided additional insight into PD regulation in soybean. The identified QTLs for PD can be efficiently employed in breeding for high-yield soybean cultivars.

Utilization of natural hybridization and intra‐cultivar variations for improving soybean yield, seed weight, and agronomic traits

AbstractSoybean (Glycine max) is a highly self‐pollinated species, but cross‐pollination occasionally occurs and variations within cultivars can be observed under certain conditions. To explore the potential uses of natural hybridization and intra‐cultivar/advanced line variations, 78 of breeding lines derived from the segregants of natural hybridization and the intra‐cultivar/line variations and their 17 source cultivars/lines were evaluated over four crop seasons for yield, seed weight, and other agronomic traits. All the lines were also genotyped using BARCSoySNP6K assays to compare the genetic similarities between the new lines and the source genotypes. Analysis of variance results indicated that genotypic differences, year effects, and genotype × year interactions were significant for all the traits. The broad‐sense heritability of the traits was estimated to be 67.22%–98.80%, suggesting that the traits were mainly affected by genetic factors. Compared with the source materials, yield of 34 breeding lines exceeded by &gt;5%, and 17 of them had yield increases of 11.85%–41.59%. Seed weight increased significantly in 24 lines, and 11 lines showed improvements in both seed weight and yield, although there was a negative correlation between these two traits. In addition, 36 and 29 lines showed a shortened period of flowering and maturity, respectively. Plant height of 20 lines decreased by &gt;8.5 cm. Genotypic matching rate between the new lines and the source materials varied from 48.86% to 99.90%. These results demonstrated that both segregations resulting from natural crossing and intra‐cultivar/line variations could be used to improve important traits in soybean.