The concentrations of Pb and Cd in the needles and twigs of fir and spruce collected from 26 sites in the Eastern Tibetan Plateau were measured and analyzed in this study. The mean concentrations of Cd and Pb were 0.034 and 1.291 mg/kg, respectively, in the needles and 0.101 and 2.511 mg/kg, respectively, in the twigs. These concentrations increased significantly with needle and twig age and peaked at 5 years. The twigs were significantly enriched in Pb and Cd compared with the needles. The spatial distributions of Pb and Cd were determined using the inverse-distance-weighted spatial interpolation method on the basis of the mean concentration of the elements in the needles and twigs from each site. The highest concentrations of Pb and Cd in twigs and needles were found in Yunnan Province and Gongga Mountain. They showed a tendency to decline from Yunnan Province to the northern direction, as well as from Gongga Mountain to the western area. Principal component analysis showed that Pb and Cd originated from the anthropogenic activities in this area. The mining activities and climatic factors may be the main sources of Pb and Cd in this area. Combining the HYSPLIT (The Hybrid Single-Particle Lagrangian Integrated Trajectory) model and PCA, the results implied that exterior Pb and Cd sources from Southeast Asia and the eastern developed cities in China can infiltrate the ecosystem through long-range transportation and accumulate in timberline forests, with atmospheric deposition in the Eastern Tibetan Plateau. This plateau suffers from severe Pb pollution but slight Cd contamination.