Solution-state 1H Research Articles

Towards shorter composite 180° refocusing pulses for NMR

Novel composite 180° pulses are designed for use in nuclear magnetic resonance (NMR) and verified experimentally using solution-state 1H NMR spectroscopy. Rather than being constructed from 180° pulses (as in much recent work), the new composite pulses are constructed from 90° pulses, with the aim of finding sequences that are shorter overall than existing equivalents. The primary (but not exclusive) focus is on composite pulses that are dual compensated – simultaneously broadband with respect to both inhomogeneity of the radiofrequency field and resonance offset – and have antisymmetric phase schemes, such that they can be used to form spin echoes without the introduction of a phase error. In particular, a new antisymmetric dual-compensated refocusing pulse is presented that is constructed from ten 90° pulses, equivalent to just five 180° pulses.

Complete 1H and 13C NMR assignment of cellulose oligomer in LiCl/DMSO

High-resolution solution-state 1H, 13C, and various 2D nuclear magnetic resonance (NMR) spectra of cellulose were obtained using cellulose oligomer dissolved in LiCl/dimethyl sulfoxide, which enabled the assignment of all 1H and 13C resonances. The observed resonances were classified into four groups of glucose rings, corresponding to internal residue, non-reducing end, and reducing ends with α- and β-anomeric configurations. This assignment included the OH protons, which are difficult to assign in cellulose using other solvent systems. NMR measurements and assignments were performed using different LiCl concentrations because information on the hydroxy protons is important for understanding the interaction between cellulose and the solvent. The resonances from the OH protons shifted downfield with increasing LiCl concentration, suggesting that LiCl was attracted to the hydroxy groups of cellulose in solution. Moreover, the magnitude of the shifts varied depending on the positions of the hydroxy groups, which indicated the regioselectivity of the interaction between LiCl and the cellulose hydroxy groups.Graphical abstract

Cryogenic and Dissolution DNP NMR on γ-Irradiated Organic Molecules.

Nuclear magnetic resonance (NMR) plays a central role in the elucidation of chemical structures but is often limited by low sensitivity. Dissolution dynamic nuclear polarization (dDNP) emerges as a transformative methodology for both solution-state NMR and metabolic NMR imaging, which could overcome this limitation. Typically, dDNP relies on combining a stable radical with the analyte within a uniform glass under cryogenic conditions. The electron polarization is then transferred through microwave irradiation to the nuclei. The present study explores the use of radicals introduced via γ-irradiation, as bearers of the electron spins that will enhance 1H or 13C nuclides. 1H solid-state NMR spectra of γ-irradiated powders at 1-5 K revealed, upon microwave irradiation, signal enhancements that, in general, were higher than those achieved through conventional glass-based DNP. Transfer of these samples to a solution-state NMR spectrometer via a rapid dissolution driven by a superheated water provided significant enhancements of solution-state 1H NMR signals. Enhancements of 13C signals in the γ-irradiated solids were more modest, as a combined consequence of a low radical concentration and of the dilute concentration of 13C in the natural abundant samples examined. Nevertheless, ca. 700-800-fold enhancements in 13C solution NMR spectra of certain sites recorded at 11.7 T could still be achieved. A total disappearance of the radicals upon performing a dDNP-like aqueous dissolution and a high stability of the samples were found. Overall, the study showcases the advantages and limitations of γ-irradiated radicals as candidates for advancing spectroscopic dDNP-enhanced NMR.

Characterization of natural organic matter in Wyoming-type bentonites irradiated at varied moisture levels

Wyoming-type bentonite clay (MX-80; Wyoming, USA) will be used in a deep geological repository (DGR) for the long-term storage of used nuclear fuel in Canada. The natural organic matter (NOM) found in bentonite may serve as a microbial nutrient source and potentially compromise the performance of the used fuel containers. Previous investigations indicate that NOM is present in low concentrations in MX-80 and has undergone extensive diagenetic alteration, though limited knowledge is available regarding NOM chemistry under simulated DGR conditions. Of particular concern is the possibility for gamma-radiation to alter NOM dissolution and reactivity due to the presence of reactive species generated by water radiolysis in Wyoming-type bentonites. In this study, NOM chemistry was investigated using complementary molecular-level techniques following exposure to a total gamma-radiation dose of 100 kGy (1.08 kGy/h for 93 h) at varied moisture levels (20%, 40%, 60% and 80%) and room temperature. Treated samples exhibited relatively low total organic carbon concentrations (0.074–0.232%), with no evidence of any major changes in total, organic, and inorganic carbon concentrations. Solid-state 13C NMR spectroscopy detected no changes in solid-phase NOM chemistry after irradiation. Solubilization of NOM increased significantly with radiation exposure at 80% moisture, suggesting higher levels of water saturation may enhance dissolved organic matter (DOM) production. Solution-state 1H nuclear magnetic resonance (NMR), and UV–Vis analyses did not identify any significant differences in DOM composition. More sensitive, targeted compound analysis revealed significant decreases in total n-alkanol concentration at lower moisture content levels (20% and 40%). Several individual compound concentrations also differed significantly at the nanogram-level, including n-octacosanol and several n-alkanoic acids at elevated moisture levels (60% and 80%). These findings suggest the majority of NOM in MX-80 remains chemically stable under the anticipated initial conditions of the proposed DGR.

Quantitative analysis of the β-1 structure in lignin by administration of [ring-1-13C]coniferin

Abstract Lignin dimeric units are characterized by various inter-unit linkage types such as β-O-4, β-5, β-β, and β-1. Spirodienones are the native form of the β-1 structures, but the content in lignin has not been clarified. In this study, the ring-1-13C labeled coniferin was synthesized and administered to Ginkgo biloba shoots, obtaining ring-1 selectively labeled xylem samples. Enzymatically saccharified lignin (EL) samples were prepared from the xylem sample (400–600 µm distant region from the cambial zone), and solution-state quantitative 13C NMR and solid-state CP/MAS NMR measurements were conducted. Acetylated EL (ELAc) was also prepared from the xylem sample (600–800 µm distant region from the cambial zone), and solution-state quantitative 13C NMR and 1H–13C 2D NMR measurements were conducted. Difference spectra obtained by subtracting the unlabeled spectra from the ring-1 labeled spectra showed that the ring-1 was responsible for broad signals at 134 ppm and signals of the spirodienone structure at 56.11 ppm (in solid-state), 54.70 ppm (EL in solution-state), and 54.72 ppm (ELAc in solution-state). The ratio of spirodienone structure was evaluated as 0.68 % (EL) and 0.72 % (ELAc) by the solution-state quantitative 13C difference spectra, and 2.3 % (ELAc) by HSQC volume ratio of Cα′-H to G2-H.

Contrasting a series of bidentate amido phosphine oxide, sulfide, or selenide ligands and complexes of dimethyl aluminum and indium.

A series of EP(V)-imine phosphine-imine ligands (Dipp-NC(CH3)-(CH2)-PE(Ph2)) (Dipp = 2,6-diisopropylphenyl, E = O, S, Se) and corresponding dimethyl aluminum and indium complexes were prepared and characterized using multi-nuclear NMR spectroscopy and SC-XRD. Solution-state 1H and 31P NMR spectroscopy indicate a mixture of isomers in solution (C6D6, CDCl3, and CD3CN). Solid state structures of both the imine and (E)-enamine isomers of the oxygen-based ligand have been observed. These three ligands (L) were then deprotonated with M(CH3)3 (M = Al or In), with methane loss forming a 6-membered ring via bidentate chelation ((κ2-L)M(CH3)2). The indium/oxide complex also crystallized as a 12-membered ring.

Assessment of salinity and heat impacts on natural organic matter composition in bentonite for used nuclear fuel storage

Bentonite clay (MX-80, Wyoming, USA) is a proposed sealing material for the safe and long-term management of Canada's used nuclear fuel in a deep geological repository (DGR). Due to the physiochemical properties of bentonite, this buffer layer can limit radionuclide mobilization, and minimize air and water circulation, and hence suppress microbial activity near the used fuel container. However, natural organic matter (NOM) in mined Wyoming-type bentonite (MX-80) may serve as microbial substrates and cause further corrosion to the used fuel container. In the proposed DGR, bentonite will be exposed to high salinity due to saline groundwater and heat released from radioactive decay of radionuclide inventory of the used nuclear fuel. There is limited knowledge about how NOM quantity and quality in MX-80 may change after being exposed to the anticipated levels of salinity and heat in a DGR, especially at the molecular-level. To explore this, organic carbon contents and NOM composition (both soluble- and solid-phase) in MX-80 after exposure to different saline (NaCl) solutions (1 M, 2 M, 3 M, 4 M and 5 M) with and without heat exposure (90 °C) were analyzed. Dissolved organic carbon (DOC) solubility decreased with increasing salinity but these differences were not statistically significant when compared to the control (P < 0.05). DOC solubilization was not significantly altered with heat (P < 0.05). Dissolved organic matter (DOM) composition was analyzed with solution-state 1H nuclear magnetic resonance (NMR) and ultraviolet–visible (UV–Vis) spectroscopy. The NMR results indicated that DOM samples with varied salinities and heat exposure had similar chemical signatures. The results from UV–Vis analysis revealed a small decrease in less unsaturated components in DOM with NaCl solution compared to deionized water. The chemistry of solid-phase NOM that remained in MX-80 after DOM isolation was similar and suggests an insensitivity to either heat and/or salinity. The solubilized DOC contributes less than 1% to the total organic carbon in MX-80, thus, the anticipated level of salinity and heat in a DGR is unlikely to enhance NOM solubilization and change NOM chemistry in the bentonite markedly. As the bentonite in this study was only exposed to the heat and salinity in a short-term experiment, further studies examining NOM composition and reactivity under long-term saline and heat conditions are recommended.

Taming the Dichalcogenides: Isolation, Characterization, and Reactivity of Elusive Perselenide, Persulfide, Thioselenide, and Selenosulfide Anions.

Reactive sulfur species (RSS) and reactive selenium species (RSeS) play integral roles in hydrogen sulfide (H2S) and hydrogen selenide (H2Se) biological signaling pathways, and dichalcogenide anions are proposed transient intermediates that facilitate a variety of biochemical transformations. Herein we report the selective synthesis, isolation, spectroscopic and structural characterization, and fundamental reactivity of persulfide (RSS-), perselenide (RSeSe-), thioselenide (RSSe-), and selenosulfide (RSeS-) anions. The isolated chalcogenides do not rely on steric protection for stability and have steric profiles analogous to cysteine (Cys). Simple reduction of S8 or Se by potassium benzyl thiolate (KSBn) or selenolate (KSeBn) in the presence of 18-crown-6 afforded [K(18-crown-6)][BnSS] (1), [K(18-crown-6)][BnSeSe] (2), [K(18-crown-6][BnSSe] (3), and [K(18-crown-6][BnSeS] (4). The chemical structure of each dichalcogenide was confirmed by X-ray crystallography and solution-state 1H, 13C, and 77Se NMR spectroscopy. To advance our understanding of the reactivity of these species, we demonstrated that reduction of 1-4 by PPh3 readily generates E═PPh3 (E: S, Se), and reduction of 1, 3, and 4 by DTT readily produces HE-/H2E. Furthermore, 1-4 react with CN- to produce ECN-, which is consistent with the detoxifying effects of dichalcogenide intermediates in the Rhodanese enzyme. Taken together, this work provides new insights into the inherent structural and reactivity characteristics of dichalcogenides relevant to biology and advances our understanding of the fundamental properties of these reactive anions.

Preparation of a ternary amorphous solid dispersion using hot-melt extrusion for obtaining a stable colloidal dispersion of amorphous probucol nanoparticles

In our previous reports, ternary amorphous solid dispersions (ASDs) of probucol (PBC)/polymer/surfactant were prepared by spray-drying and cryo-grinding, and colloidal dispersions of amorphous PBC nanoparticles were obtained by dispersing the ternary ASD into water. In this study, hot-melt extrusion, which is a practical method for preparing ASD formulations, was utilized to obtain ternary ASDs and colloidal dispersions of amorphous PBC nanoparticles. Polyvinylpyrrolidone K12 (PVP) with a relatively low Tg (below 100 °C) was used as a polymer, while poloxamer P407 (P407), which is chemically stable during the hot-melt extrusion process, was utilized as a surfactant. Ternary ASDs were successfully produced with high weight ratios of PVP and P407. A hydrogen bond between the PBC hydroxyl proton and PVP carbonyl oxygen in the ternary ASD was detected using solid-state NMR spectroscopy, suggesting that amorphous PBC was stabilized mainly by PVP. Stable colloidal dispersions of amorphous PBC nanoparticles were obtained from the PBC/PVP/P407 ASD at a weight ratio of 1:4:2. The mean particle size was below 200 nm and the amorphous state of PBC remained stable upon storage at 25 °C for 14 d. Solution-state 1H NMR and zeta-potential measurements suggested that P407 mainly stabilized the colloidal dispersion of amorphous PBC nanoparticles by steric hindrance at the solid/liquid interface. The findings of this study demonstrate that hot-melt extrusion can form practical ternary ASDs that provide colloidal dispersion of amorphous drug nanoparticles. Thus, this study advocates for the use of hot-melt extrusion in the design of an amorphous formulation for a variety of poorly water-soluble drugs.

NMR relaxation and diffusion studies to probe the motional dynamics of risperidone within PLGA microsphere

The present study aims to investigate the motional dynamics of risperidone within polylactic co-glycolic acid (PLGA) microsphere by employing solution state 1H and 19F nuclear magnetic resonance (NMR) measurements. Risperidone, a second-generation fluorinated antipsychotic drug used for the treatment of schizophrenia is commercially marketed as PLGA microsphere formulation resulting in prolonged release of the drug in solution. Although the current trend in the pharmaceutical market is to develop drug formulation with long-acting release (LAR) products, complete physicochemical characterization of such formulations are scarce. Especially the effects of microsphere encapsulation on the motional properties and diffusion behavior of the drugs are not discussed adequately in any of the earlier reports. We therefore, have employed NMR relaxation and diffusion measurements to decipher the interaction of PLGA cavity water with risperidone. A detailed analysis of NMR relaxation rates confirmed the event of encapsulation and the presence of local motion in the non-fluorinated end of risperidone. Further, the relaxation data indicated a significant alteration in 19F chemical shift anisotropy (CSA) and CSA/dipole-dipole (DD) cross-correlated relaxation mechanism and decreased effect of solvent relaxation pointing out reduced water concentration within the microsphere cavity. 1H and 19F diffusion coefficients of risperidone led to the information about hydrodynamic radius of risperidone in free and encapsulated states. Measurement of hydrodynamic radius supported the presence of limited water in PLGA cavity allowing higher translational mobility of risperidone after the encapsulation.

Co-amorphous formulation of dipyridamole with p-hydroxybenzoic acid: Underlying molecular mechanisms, physical stability, dissolution behavior and pharmacokinetic study

Coamorphization has been proven to be an effective approach to improve bioavailability of poorly soluble active pharmaceutical ingredients (APIs) by virtue of solubilization, and also contributes to overcome limitation of physical stability associated with amorphous drug alone. In current work, a co-amorphous formulation of dipyridamole (DPM), a poor solubility drug, with p-hydroxybenzoic acid (HBA) was prepared and investigated. At a molar ratio of 1:2, DPM and HBA were melted result in the formation of a binary co-amorphous system. The DPM-HBA co-amorphous was structurally characterized by powder X-ray diffraction (PXRD), temperature modulated differential scanning calorimetry (mDSC), high performance liquid chromatography (HPLC) and solution state 1H nuclear magnetic resonance (1H NMR). The molecular mechanisms in the co-amorphous were further analysed via Fourier-transform infrared (FTIR) and Raman spectroscopies, as well as density functional theory (DFT) calculation. All the results consistently revealed the presence of hydrogen bonding interactions between –OH of DPM and −COOH on HBA. Accelerated test and glass transition kinetics showed excellent physical stability of DPM-HBA co-amorphous compared with amorphous DPM along with glass transition temperatures (Tg). The phase-solubility study indicated that complexation occurred between DPM and HBA in solution, which contributed to the solubility and dissolution enhancement of DPM in co-amorphous system. Pharmacokinetic study of co-amorphous DPM-HBA in mouse plasma revealed that the DPM exhibited 1.78-fold and 2.64-fold improvement in AUC0‑∞ value compared with crystalline and amorphous DPM, respectively. This current study revealed coamorphization is an effective approach for DPM to improve the solubility and biopharmaceutical performance.

Assessment of heat and radiation impacts on natural organic matter composition in bentonite for used nuclear fuel disposal

Bentonite clay (Wyoming, USA) is proposed as a buffer layer for the engineered barrier system for the deep geologic repository to store Canada's used nuclear fuels in the long-term. The presence of natural organic matter (NOM) in the mined bentonite may support microbial activity which may promote the corrosion of used fuel containers. The NOM found in Wyoming-type bentonite is diagenetically altered, however, there is limited knowledge about how NOM chemistry may change with heat and radiation when exposed to the proposed deep geologic repository conditions. To investigate this further, molecular-level techniques were used to analyze NOM compositional differences in bentonite with different heat (30–105 °C for 3 days, and 90 °C for 14, 28 and 42 days) and gamma-radiation exposure (100 kGy for 3 days). Elemental analysis results indicated that all bentonite samples exhibited low total organic carbon concentrations (0.15–0.27%) and 1.6–3.3% of these were in the form of extractable dissolved organic carbon. Solution-state 1H nuclear magnetic resonance (NMR) and solid-state 13C NMR analyses revealed that chemical signatures of dissolved organic matter and overall NOM composition did not vary between samples. Slightly increased concentrations of short-chain (C9-C19) n-alkanoic acids were observed with heat (14, 28 and 42 days at 90 °C), which is likely due to the oxidation of long-chain (≥C20) n-alkanes or n-alkanols. However, the broader assessment of NOM composition via principal component analysis of forty-four targeted NOM compounds indicated no significant differences after heat or radiation exposure. Collectively, the molecular-level analyses indicate that heat and radiation only imparted nanogram-level differences in some targeted compound concentrations, but the overall NOM chemistry was not altered. These results expand the understanding of NOM chemistry in bentonite clay and suggest that under the conditions tested, NOM composition in bentonite was largely insensitive to heat and radiation exposure. Further work is warranted to investigate longer exposure durations and the overall stability of NOM in a deep geologic repository setting.

Real-Time 1H NMR reveals position and sequence dependences of amino acid isomerization in amyloid beta fragments in situ

Amino acid isomers and their biologically relevant functions have been found in a variety of peptides and proteins in a living system. It is challenging, however, to specify how such isomerization proceeds at each amino acid independently in situ. In this work, the amino acid isomerization was quantified simultaneously at multiple residues in real time, by using solution-state 1H NMR in situ. The ability of NMR to distinguish isomerization product and reactant was demonstrated at different positions of aspartyl (Asp) residues in amyloid beta (Aβ) 1–40 fragments, as well as the glutamyl (Glu) residue. This enabled us to compare the isomerization of Asp1, Asp7, and Asp23, and Glu3 systematically in various Aβ fragments, in terms of the kinetics of isomerization in real time. It was found that Asp1 and Asp7 were prone to convert to iso-aspartyl (isoAsp) form, although Asp23 and Glu3 showed limited reactivity. The analysis demonstrated the role of histidine (His) in regulating Asp isomerization; His6 and His13/14 showed an inhibitory effect on the progress of isomerization at Asp1 and Asp7, respectively, by forming Asp-His complex that serves to slow down the conversion from Asp to isoAsp.

Characterization of Phenolic Plant Exudates by Nuclear Magnetic Resonance Spectroscopy.

The class of plant exudates that contain the phenol functionality, termed phenolics, is defined, surveyed, and characterized by solid-state 13C NMR spectroscopy and by solution-state 1H NMR spectroscopy. Materials in this group are identified by the phenolic 13C resonance (from the ipso carbon of ArOH) at δ 145-160 (δ 160-167 for ArOR). The resonance patterns define several subclasses based on the collective similarity of their 13C spectra, specifically, aloetics from the genus Aloe, guaiacs from the genus Guaiacum and other eurosid and conifer genera, xanthics from the genus Garcinia, and kinos from the genus Eucalyptus and many other genera. Phenolic exudates often are mixed with terpenoid materials (the building block of exudates known as resins) and carbohydrates (the building block of exudates known as gums) to form hybrid subgroups such as guaiac gums, guaiac resins, and kino resins. There are numerous phenolic exudates not affiliated with any of these groups, both as pure phenolics and as hybrids (phenolic resins, phenolic gum resins, and phenolic waxes).

Chemical Perspective of the Mechanism of Action of Antiamyloidogenic Compounds Using a Minimalistic Peptide as a Reductionist Model.

The diphenylalanine (FF) residue which is present at the 19 and 20 positions of the amyloid beta (1-42) (Aβ42) peptide sequence is considered as a reductionist model for studying Aβ42 aggregation. FF self-assembles into well-ordered tubular structures via aromatic π-π stacking. Herein the manuscript, we have presented a chemical perspective on the mechanism of action of antiamyloid compounds by assessing their interaction with FF. Therefore, we first coincubated FF fibers with single amino acids, since they are constituted of different R side chains yet have a common structural unit. This study revealed a crucial role of aromatic rings and functional groups like thiol (-SH) in causing destabilization of FF assembly via their interaction with π-electrons participating in π-π stacking present in FF. We further studied the interaction of different nonsteroidal anti-inflammatory drugs (NSAIDs), other known antiamyloidogenic compounds, and host-guest inclusion compounds like cyclodextrin (CD) to assess their mechanism of action and to decipher the functional moiety present in these compounds which could cause destabilization of π-π stacking. From the coincubation experiments, we could surmise a crucial role of aromatic rings present in these compounds for causing interference in aromatic stacking. We further consolidated our observations through microscopy analysis by various spectroscopic methods such as aggregation-induced emission enhancement (AIEE), fluorescence spectroscopy, solution-state 1H NMR, FTIR, and circular dichroism. The studies presented in the manuscript thus provide significant insights into the role of functional groups in imparting antiamyloid action and open new avenues for an efficient design of antiamyloid drugs in the future.

The Research of G-Motif Construction and Chirality in Deoxyguanosine Monophosphate Nucleotide Complexes.

A detailed understanding of the mismatched base-pairing interactions in DNA will help reveal genetic diseases and provide a theoretical basis for the development of targeted drugs. Here, we utilized mononucleotide fragment to simulate mismatch DNA interactions in a local hydrophobic microenvironment. The bipyridyl-type bridging ligands were employed as a mild stabilizer to stabilize the GG mismatch containing complexes, allowing mismatch to be visualized based on X-ray crystallography. Five single crystals of 2′-deoxyguanosine–5′–monophosphate (dGMP) metal complexes were designed and obtained via the process of self-assembly. Crystallographic studies clearly reveal the details of the supramolecular interaction between mononucleotides and guest intercalators. A novel guanine–guanine base mismatch pattern with unusual (high anti)–(high anti) type of arrangement around the glycosidic angle conformations was successfully constructed. The solution state 1H–NMR, ESI–MS spectrum studies, and UV titration experiments emphasize the robustness of this g–motif in solution. Additionally, we combined the methods of single-crystal and solution-, solid-state CD spectrum together to discuss the chirality of the complexes. The complexes containing the g–motif structure, which reduces the energy of the system, following the solid-state CD signals, generally move in the long-wave direction. These results provided a new mismatched base pairing, that is g–motif. The interaction mode and full characterizations of g–motif will contribute to the study of the mismatched DNA interaction.

Isomerization of Aspartyl Residue in Amyloid Beta Fragments: The Kinetics by Real-Time 1H NMR Under Neutral and Basic Conditions

Isomers of aspartyl (Asp) residues have been found in various proteins in aged human tissues. Isomerization of Asp is considered as one of the potential factors to facilitate amyloidosis via the oligomerization of amyloid beta (Aβ) peptides. It is still challenging to analyze such isomerization in real time, and no information has been provided about Asp isomerization in situ. In this work, we report a real-time quantitation of the isomerization at Asp in Aβ fragment peptides, Aβ2−9 (A2EFRHD7SG9) and Aβ2−16 (A2EFRHD7SGYEVHHQK16) by using solution-state 1H NMR in situ. The simultaneous NMR detection of isomerization product and reactant enables us to compare how fast Asp is converted to isoAsp in terms of the kinetics of isomerization in real time. In Aβ2−9, the rate constant, k of the increase of isoAsp7 was almost parallel with the decrease of Asp7; the rate constants were estimated to be (1.3 ± 0.1) × 10−3 h−1 for Asp7 decrease and (1.2 ± 0.1) × 10−3 h−1 for the increase of isoAsp7 at 70 °C. In Aβ2−16, however, k of isoAsp7 increase was much less than the Asp7 decrease. This is due to an inhibitory effect of histidine (His) on the progress of Asp isomerization; the coupling of His imidazole ring with a succinimide (Suc) intermediate makes Suc lifetime longer enough to interfere with the conversion to isoAsp.

Identification of compounds from terrestrial dissolved organic matter toxic to cyanobacteria

There is emerging evidence for the phytotoxicity of terrestrial dissolved organic matter (DOM), however its sources, transformations and ecological effects in aquatic ecosystems are poorly understood. DOM characterization by Nuclear Magnetic Resonance (NMR) spectroscopy has typically involved solid-state techniques, but poor resolution has often precluded identification of individual components. This study is the first to directly identify individual phytotoxic components using a novel combined approach of preparative HPLC fractionation of DOM (obtained from leaves of two common riparian trees, Casuarina cunninghamiana and Eucalyptus tereticornis). This was followed by chemical characterization of fractions, using one-dimensional (1D) and two-dimensional (2D) solution-state 1H NMR analyses. Additionally, the phytotoxic effect of the fractions was determined using cultures of the cyanobacteria Raphidiopsis (Cylindrospermopsis) raciborskii. The amino acid, proline, from Casuarina leachate was identified as phytotoxic, while for Eucalyptus leachate, it was gallic acid and polyphenols. These phytotoxicants remained in the leachates when they were incubated in sunlight or the dark conditions over 5 days. Our study identifies phytotoxic compounds with the potential to affect algal species composition, and potentially control nuisance R. raciborskii blooms.

Dissolved organic matter characteristics in soils of tropical legume and non-legume tree plantations

Dissolved organic matter (DOM) drives many fundamental biogeochemical processes (e.g., carbon storage, nutrient cycling, and soil development) in forest soil. However, the molecular-level characteristics of DOM derived from different types of tropical forest soils are poorly understood. Here, water samples at different soil depths (0, 20, and 40 cm) from tropical legume (Acacia auriculiformis, AA) and non-legume (Eucalyptus urophylla, EU) tree plantations were analyzed using absorption and fluorescence spectroscopy, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), and solution-state 1H nuclear magnetic resonance (NMR) spectroscopy. The FT-ICR MS results indicated that DOM persisted in the soil, but its molecular composition notably shifted from low-mass (150–300 Da) and more-aromatic molecules to middle- (300–450 Da) and high-mass (>450 Da) and less-aromatic molecules with increasing soil depth. This was primarily mediated by consumption and mineral sorption of low-mass plant-derived DOM (e.g., low-mass carbohydrates and polyphenols) and further formation of larger microbial products (e.g., protein-like and lipid-like compounds). In addition, a higher abundance of microbial-derived molecules (e.g., protein-like and carboxyl-rich alicyclic molecules) was found at the legume plantation relative to the non-legume plantation, which suggests a faster microbial turnover of DOM. Also, the legume plantation had greater enrichment of middle- and high-mass and condensed aromatic-like DOM components in soils. These findings improve our understanding of the drivers that mediate the response of DOM to soil depth and tree species in tropical plantations.

Synthesis of 4-(2-fluorophenyl)-7-methoxycoumarin: experimental and computational evidence for intramolecular and intermolecular C-F···H-C bonds.

4-(2-Fluorophenyl)-7-methoxycoumarin (6) was synthesized by Pechmann reaction under mild conditions via a three-step reaction. The solution-state 1H NMR spectra of 6 showed a strong intramolecular interaction between F and H5 (JFH = 2.6 Hz) and 13C NMR suggested that this C–F···H–C coupling is a through-space interaction. The 2D 19F-{1H} HOESY and 1H-{19F} 1D experiments were done to confirm this F···H interaction. The single crystal X-ray structure and the DFT-optimized structure showed that the fluorinated phenyl ring favors the orientation with the fluorine atom closer to H5 than H3. The X-ray structure also showed the existence of the intermolecular C–F···H–C interaction.