Straw return is an effective management practice for improving physical and chemical properties of saline–sodic soil in Northeast China. Straw decomposition and nutrient release are deeply influenced by soil and climatic factors. In Northeast China, straw decomposes slowly due to the long winter with low temperatures. Therefore, the season of straw return may be a key issue affecting rice. However, the impact of returning straw in different seasons on rice is disregarded and not commonly researched. We conducted a 2-year field experiment, including two residue management treatments: spring straw return treatment (SR) and autumn straw return treatment (AR), each containing five different N rates (0, 90, 180, 270, and 360 kg ha−1) as sub-treatments. The results reveal that, compared with the spring straw returning treatment, the autumn straw returning treatment significantly improved root morphology and root vigor and increased the number of spikes per unit area, which directly increased rice yield by 4.76% (2020) and 6.62% (2021). In addition, rice yield showed an increasing and then decreasing trend with the increase in N fertilizer application, and it was at its maximum when the N application rate was 270 kg ha−1. Compared to the spring straw return treatment, the autumn straw return treatment was able to reduce 31.46% (2020) and 38.48% (2021) of N fertilizer application without decreasing rice yield. Our findings demonstrate that straw return combined with nitrogen fertilization may be a promising management practice for improving rice root systems and yield in saline–sodic soils, and under the conditions of the autumn straw returning treatment, the best nitrogen fertilizer application rate was 270 kg ha−1.