Soil Habitats Research Articles

Urban soil quality deteriorates even with low heavy metal levels: An arthropod-based multi-indices approach.

Urban-induced habitat conversion drastically changes soil life in a variety of ways. Soil sealing, human disturbance, habitat fragmentation, industrial and vehicular pollution are the main causes of urban soil degradation. Soil arthropods, as one of the most abundant and diverse group of soil fauna, are involved in many soil processes that are of great importance in maintaining soil health and multifunctionality. Nevertheless, soil quality is still mainly characterized by physical, chemical, and microbiological parameters. Here, we assessed and compared the biological soil quality in woody (REF: reference forest, REM: remnant forest) and nonwoody (TURF: public turfgrass, and RUD: ruderal habitat) types of urban green spaces along a disturbance and management intensity gradient in the Budapest metropolitan area (Hungary), using community metrics and soil arthropod-based indicators. Vegetation cover and landscape characteristics of study sites were quantified through vegetation and urbanization indices, respectively. Basic soil properties, total and bioavailable concentrations of the main heavy metals (Cd, Co, Hg, Ni, Zn) were also measured. Acari, Collembola, and Hymenoptera (mainly Formicidae) were the most abundant groups. Litter-dweller taxa, particularly Protura, proved to be the most sensitive to urban disturbance. Representatives of Hemiptera, Diptera, Symphyla, and Pauropoda were common in low densities. The taxonomic diversity of soil arthropod assemblages in nonwoody and woody habitats was similar. Although the integrated faunal indices showed no differences among soil habitat types, they provided different responses and, consequently, different information. Our findings demonstrated that the biological quality and arthropod community structure of soils were strongly impacted by soil C/N and heavy metal contamination. We found that low and moderate levels of pollution have adverse effects on edaphic fauna, suggesting biological degradation of soils, even below pollution limits. Nevertheless, more disturbed urban green spaces have been shown to play a significant role in maintaining belowground biodiversity, thereby soil functions.

Soil habitat condition shapes Tamarix chinensis community diversity in the coastal saline-alkali soils.

Unfavorable coastal saline-alkali soil habitats degrade plant community diversity and reduce terrestrial ecological functions. Previous studies have been conducted on the mechanisms by which certain saline-alkali soil properties determine plant community diversity, however, how those properties synergistically affect plant community diversity remains unclear. Here, 36 plots of typical Tamarix chinensis communities were investigated for a range of parameters at three different distances (10, 20, and 40 km) from the coastline in the Yellow River Delta between 2020 and 2022, and corresponding soil samples were taken and analyzed. Our results suggest that although T. chinensis density, ground diameter, and canopy coverage significantly increased (P<0.05) with increasing distance from the coast, the communities with the most plant species were found at 10 to 20 km distance from the coastline, indicating the effects of soil habitat on T. chinensis community diversity. Simpson dominance (species dominance), Margalef (species richness), and Pielou indices (species evenness) differed significantly among the three distances (P<0.05) and were significantly correlated with soil sand content, mean soil moisture, and electrical conductivity (P<0.05), indicating that soil texture, water, and salinity were the main factors governing T. chinensis community diversity. Principal component analysis (PCA) was performed to construct an integrated soil habitat index (SHI) representing the synthesis of the soil texture-water-salinity condition. The estimated SHI quantified a 64.2% variation in the synthetic soil texture-water-salinity condition and was significantly higher at the 10 km distance than at the 40 and 20 km distances. The SHI linearly predicted T. chinensis community diversity (R2 = 0.12-0.17, P<0.05), suggesting that greater SHI (coarser soil texture, wetter soil moisture regime, and higher soil salinity) was found closer to the coast and coincided with higher species dominance and evenness and lower species richness in the T. chinensis community. These findings on the relationship between T. chinensis communities and soil habitat conditions will be valuable in planning the restoration and protection of the ecological functions of T. chinensis shrubs in the Yellow River Delta.

On the relative importance of resource availability and habitat connectivity as drivers of soil biodiversity in Mediterranean ecosystems

Abstract Soil biota influences nutrient cycling and climate regulation and represents an important fraction of global biodiversity, yet we know very little about how this soil biota responds to habitat fragmentation and degradation of habitat quality. We studied the response of different soil trophic groups (microbes and soil fauna), and their trophic structure, to changes in their habitat derived from forest long‐term management and extensive tree die‐off in a Mediterranean ecosystem. Specifically, we evaluated changes in (i) habitat size, (ii) habitat resource availability and heterogeneity and (iii) habitat connectivity. To do this, we sampled the soil biota of 43 holm oak trees (and five open interspaces) differing in size, quality, heterogeneity, connectivity and the effect of die‐off (healthy or affected). We sorted soil biota by trophic group and related their richness to habitat characteristics. Seven of the 12 trophic groups evaluated increased their species richness with soil organic carbon content, which was the most frequently selected driver of soil biota (both microbial and faunal richness). Habitat connectivity positively affected the richness of larger organisms (fauna) and plant attributes (richness, productivity and specific leaf area) also showed significant but contrasting effects depending on the group evaluated. Due to the idiosyncratic responses of different groups, the entire trophic structure (microbes and fauna) was affected by a more complex set of factors than most trophic groups in isolation, including interactions between habitat size and resource availability or connectivity. A major factor influencing habitat resource availability was the die‐off of the dominant tree species (drastically altering tree productivity). We found weaker and more negative relationships between trophic groups under trees suffering from die‐off than beneath healthy trees, particularly between microbial rather than faunal groups. Synthesis. We provide a comprehensive assessment of the response of key members of the soil food web to habitat fragmentation and tree die‐off (landscape‐level plant–soil interactions), illustrating the major role of soil carbon, habitat connectivity and tree die‐off in driving soil biodiversity and trophic structure.

Natural grassland conversion to cultivated pastures increases soil microbial niche specialization with consequences for ecological processes

The conversion of natural grasslands to cultivated pastures has a profound effect on the soil habitat conditions, influencing the proportion of soil specialist and generalist microbes, with consequences for the assembly of microbial communities. This often leads to the homogenization of the microbial community and thus favoring stochastic assembly processes. However, there is still a gap in understanding the effect of conversion from natural grasslands to cultivated pastures on soil microbial ecological processes. Therefore, we aimed to investigate the assembly patterns of microbial communities and evaluate the ecological models for generalists and specialist microbes along a grassland management intensification gradient. Through 16S rRNA amplicon sequencing, we found that the conversion of natural grasslands to cultivated pastures has increased the number of microbial specialists, resulting in stochastic assembly processes due to the decrease in plant diversity. Moreover, the ecological processes governing the assembly of microbial communities were affected by soil and vegetation management. The perennial pasture was more affected by homogenizing selection, owing to the lower plant diversity and uniform plant covering and root development. We have found that the generalists in the grasslands are shaped by niche-based models, while the specialists in natural grasslands are more stochastic in nature. For improved pastures, we have found that lognormal and preemption models are more predominant, suggesting that homogenizing dispersal is more predominant than variable selection. We highlight it is essential to comprehend these assembly models and ecological processes to ensure plant-microbe supporting and provisioning ecosystem services for cattle, and humans while establishing management strategies and conservation policy priorities.

Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass

Nitrogen (N) is frequently limiting to plant growth, in part because most soil N is present as polymeric organic compounds that are not readily taken up by plants. Microbial depolymerization of these large macromolecular N-substrates gradually releases available inorganic N. While many studies have researched and modeled controls on soil organic matter formation and bulk N mineralization, the ecological—spatial, temporal and phylogenetic—patterns underlying organic N degradation remain unclear. We analyzed 48 time-resolved metatranscriptomes and quantified N-depolymerization gene expression to resolve differential expression by soil habitat and time in specific taxonomic groups and gene-based guilds. We observed much higher expression of extracellular serine-type proteases than other extracellular N-degrading enzymes, with protease expression of predatory bacteria declining with time and other taxonomic patterns driven by the presence (Gammaproteobacteria) or absence (Thermoproteota) of live roots and root detritus (Deltaproteobacteria and Fungi). The primary chitinase chit1 gene was more highly expressed by eukaryotes near root detritus, suggesting predation of fungi. In some lineages, increased gene expression over time suggests increased competitiveness with rhizosphere age (Chloroflexi). Phylotypes from some genera had protease expression patterns that could benefit plant N nutrition, for example, we identified a Janthinobacterium phylotype and two Burkholderiales that depolymerize organic N near young roots and a Rhizobacter with elevated protease levels near mature roots. These taxon-resolved gene expression results provide an ecological read-out of microbial interactions and controls on N dynamics in specific soil microhabitats and could be used to target potential plant N bioaugmentation strategies.

Role of Endemism and Other Factors in Determining the Introduction Success of Rare and Threatened Species in Tashkent Botanical Garden

Although rare and threatened species are maintained in many botanical gardens around the world, detailed reports on the success or failure of their introduction appear infrequently, which makes it difficult to understand the major constraints of growing imperilled species in botanical garden living collections. Though intuitively, a level of endemism appears to be important, its role as a predictor of species cultivation success in the garden living collections has never been tested. This paper summarizes the experience of the Tashkent Botanical Garden in creating and maintaining living collections of rare and threatened species of Uzbekistan, trying to understand the role of endemism and other factors in the success and failure of these species cultivation. We found that out of 100 rare and threatened species introduced, the cultivation of 26 failed. Most of these species were endemic to the country, occupying soil types and habitats different from those of the garden site. However, surprisingly, the introduction of many analogous species has been successful. This implies that some narrow endemics can be successfully grown in botanical gardens, but to predict which can and which cannot is impossible, and there are no alternatives to introduction trials. Overall, the large number of rare and threatened species for which introductions were successful confirms the important role of ex situ conservation in preserving critically endangered biodiversity and should stimulate further work in this direction. The future efforts of the garden staff will focus on two major objectives: (i) collecting seeds of endangered species that have so far skipped attention or their collection missions have not been successful; and (ii) propagating those species that have proven cultivation success and using the propagated material for in situ actions.

Prioritizing forest conservation strategies using a multi-attribute decision model to address concerns with the survival of the endangered dragon tree (Dracaena ombet Kotschy and Peyr.)

The globally endangered Dracaena ombet is one of the ten dragon multipurpose tree species in arid ecosystems. Anthropogenic and natural factors are now impacting the sustainability of the species. This study was conducted to prioritize criteria and alternative strategies for conservation of the species using the Analytical Hierarchy Process (AHP) model by involving all relevant stakeholders in the Desa'a dry Afromontane forest, northern Ethiopia. Information about the potential alternative strategies and the criteria for their evaluation were first collected from experts, personal experiences and literature reviews. Afterwards, they were validated using stakeholders' focus group discussions. Five candidate strategies with three evaluation criteria were considered for prioritization using the AHP techniques. The overall priority ranking value of the stakeholders showed that the ecological criterion was deemed as the most essential factor for the choice of the alternative strategies, followed by the economic and social criteria. The minimum cut-off strategy, combining exclosures with collection of only 5% of plant parts from the species, soil and water conservation and habitat protection management options, was selected as the best alternative strategy for sustainable D. ombet conservation. The livelihood losses due to the selected strategy should be compensated by the collection of non-timber forest products, poultry farming, home gardens, rearing small ruminants, beekeeping and agroforestry. This approach may be extended to study other dragon tree species and explore strategies for the conservation of other arid ecosystems.

Trophic interrelationships of bacteria are important for shaping soil protist communities.

Protists occupy multiple trophic positions in soil food webs and significantly contribute to organic matter decomposition and biogeochemical cycling. Protists can ingest bacteria and fungi as main food sources while being subjected to predation of invertebrates, but our understanding of how bottom-up and top-down regulations structure protists in natural soil habitats is limited. Here, we disentangle the effects of trophic regulations to the diversity and structure of soil protists in natural settings across northern and eastern Australia. Bacterial and invertebrate diversity were identified as important drivers of the diversity of functional groups of protists. Moreover, the compositions of protistan taxonomic and functional groups were better predicted by bacteria and fungi, than by soil invertebrates. There were strong trophic interconnections between protists and bacteria in multiple organismic network analysis. Altogether, the study provided new evidence that, bottom-up control of bacteria played an important role in shaping the soil protist community structure, which can be derived from feeding preferences of protists on microbial prey, and their intimate relationships in soil functioning or environmental adaptation. Our findings advance our knowledge about the impacts of different trophic groups on key soil organismic communities, with implications for ecosystem functions and services.

Bacterial communities in the phyllosphere are distinct from those in root and soil, and sensitive to plant species changes in subtropical tree plantations.

Deciphering the local diversity and community composition of plant-associated microorganisms is crucial to predict their ecological functions in forest ecosystems. The differences in microbial diversity and community composition between the aboveground and belowground tree compartments remain largely unknown. Here we examined bacterial communities in the leaf surface (phyllosphere) and root-associated (root and rhizospheric soil) habitats of 13 tree species. Bacterial richness substantially differed across the three compartments, with the highest value observed in rhizospheric soil. Tree species exerted a significant effect on α-diversity of leaf- and soil- but not root-inhabiting bacteria. Bacterial communities were distinct across habitats and were significantly more divergent in leaf- than in root-associated habitats. Leaf nutrients and soil pH and NH4+-N were the main factors regulating leaf- and root-related community composition, respectively. This study highlights that host selection effects on bacterial community structure were more prominent in aboveground than in belowground habitats. Our findings contribute to a better understanding of the effect of compartments and subtropical tree species on microbial diversity, with crucial implications for sustainable forest plantation management.

Source, occurrence, distribution, fate, and implications of microplastic pollutants in freshwater on environment: A critical review and way forward

The generation of microplastics (MPs) has increased recently and become an emerging issue globally. Due to their long-term durability and capability of traveling between different habitats in air, water, and soil, MPs presence in freshwater ecosystem threatens the environment with respect to its quality, biotic life, and sustainability. Although many previous works have been undertaken on the MPs pollution in the marine system recently, none of the study has covered the scope of MPs pollution in the freshwater. To consolidate scattered knowledge in the literature body into one place, this work identifies the sources, fate, occurrence, transport pathways, and distribution of MPs pollution in the aquatic system with respect to their impacts on biotic life, degradation, and detection techniques. This article also discusses the environmental implications of MPs pollution in the freshwater ecosystems. Certain techniques for identifying MPs and their limitations in applications are presented. Through a literature survey of over 276 published articles (2000–2023), this study presents an overview of solutions to the MP pollution, while identifying research gaps in the body of knowledge for further work. It is conclusive from this review that the MPs exist in the freshwater due to an improper littering of plastic waste and its degradation into smaller particles. Approximately 15–51 trillion MP particles have accumulated in the oceans with their weight ranging between 93,000 and 236,000 metric ton (Mt), while about 19–23 Mt of plastic waste was released into rivers in 2016, which was projected to increase up to 53 Mt by 2030. A subsequent degradation of MPs in the aquatic environment results in the generation of NPs with size ranging from 1 to 1000 nm. It is expected that this work facilitates stakeholders to understand the multi-aspects of MPs pollution in the freshwater and recommends policy actions to implement sustainable solutions to this environmental problem.

The Construction of Ecological Security Pattern under Rapid Urbanization in the Loess Plateau: A Case Study of Taiyuan City

Taiyuan City in the eastern Loess Plateau has experienced severe ecological problems caused by urban expansion. For cities undergoing rapid urbanization, building an ecological security pattern (ESP) is an effective means to improve urban resilience. Here, geographic information systems (GIS) were used to analyze, manipulate, and visualize urban ecological multi-source information and remote sensing (RS) for the history of land use/land-cover (LULC) changes and the structure of the urban ecological system. Four important ecosystem service functions were estimated: soil conservation, habitat quality, water yield, and carbon storage. The minimum cumulative resistance (MCR) model was combined with the circuit theory method to determine the ecological corridors, pinch points, and barrier points. Our results showed that: (1) from 1980 to 2020, Taiyuan’s built-up area showed increased construction land and enhanced landscape fragmentation. The decline in cultivated land was mainly attributed to construction land. During the period from 2000 to 2010, a greater amount of land was changed in Taiyuan than in other periods; (2) The ecosystem service evaluation based on the LULC in 2020 revealed that the central urban area was lower than the other areas; (3) 38 ecological source sites were identified, accounting for 16% of the total study area. An area of 106 km2 was allocated to construct 79 ecological corridors. We identified 31 ecological pinch points and 6 ecological barrier points; (4) an ESP optimization governance model of “two rings, four zones, and nine corridors” was proposed. Our study provides theoretical guidance for sustainable development and ecological design in Taiyuan City and other regions.

Spatiotemporal evolution of ecosystem services and its potential drivers in coalfields of Shanxi Province, China

Coal contributes considerably to economic and social development. Its economic benefits have been in focus, whereas the ecosystem services (ESs) that coalfields provide have been largely neglected, and the research on driving force is not deep enough. We estimated soil conservation level, water yield, and habitat quality using the Integrated Valuation of Ecosystem Services and Tradeoffs model; evaluated carbon sequestration using the Carnegie-Ames-Stanford approach; and quantified windbreak and sand fixation using the revised wind erosion equation, based on multi-source data from coalfields in Shanxi Province, China, from 1986 to 2020. Additionally, we identified the dominant effects of the single drivers, and their interactions on ESs, using the geographical detector model. Thereafter, the relative contribution of natural factors and anthropogenic disturbance to ESs was quantified. The results showed that (1) The functions of soil conservation, water yield, carbon sequestration, and windbreak and sand fixation greatly improved, whereas the habitat quality decreased slightly from 1986 to 2020. (2) Changes in soil conservation were mainly influenced by temperature, precipitation, digital elevation model (DEM), population size, construction land area, coal mining intensity, industrial output, and land use intensity. Variations in water yield were mainly governed by temperature, precipitation, DEM, population size, construction land area, industrial output, and coal mining intensity. Variations in carbon sequestration were mainly affected by temperature, precipitation, slope, and coal mining intensity. Changes in windbreak and sand fixation services were mainly influenced by temperature, precipitation, slope, DEM, construction land area, coal mining intensity, industrial output, and land use intensity. Changes in habitat quality were mainly influenced by precipitation, slope, DEM, population size, coal mining intensity, industrial output, and land use intensity. (3) The impacts of the interactions between natural and human factors on ESs were more remarkable than those of a single factor. Furthermore, the contribution of natural factors to changes in ESs was dominant, whereas that of human factors was relatively small. Efficient coordination between natural and human forces, as well as ESs, is essential for the long-term evolution of the coalfield ecosystem. Such efforts will provide a scientific foundation for developing land reclamation and ecological restoration.

Fossil diversity in ‘dawn’ hexapods (Diplura: Projapygoidea), with direct evidence for being chemically predaceous in the Cretaceous

Abstract Diplurans are among the earliest hexapods in the geological record. These primitively wingless relatives of insects are infrequently encountered despite being pervasive in soil habitats. Two groups have disparate adaptations for hunting, one mechanical and the other chemical, in Japygoidea and Projapygoidea, respectively. Here, we report three genera (two new) and four species of fossil Projapygidae preserved in Mesozoic and Cenozoic ambers: Electroprojapyx alchemicus gen. et sp. nov. in mid-Cretaceous Myanmar amber, and Symphylurinopsis punctatus gen. et sp. nov. and two species (unnamed) of Symphylurinus in Miocene Dominican amber. The exceptionally preserved specimens possess cerci that are morphologically specialized for expelling a glandular substance on prey. The new Cretaceous E. alchemicus is a stem group to all living species of the family and provides conclusive Mesozoic evidence for a rare type of predation involving offensive (vs. defensive) secretions. The specimen was fossilized in a preying-and-spraying position with its presumptive meal, a Symphypleona springtail (Collembola), reflecting the behavioural predatory repertoire of modern relatives. Apart from one Cenozoic species, these rare specimens represent the only fossil record of the family Projapygidae. Our findings demonstrate that these basal hexapods were predators of small arthropods of ancient forest soils and enrich our understanding of palaeoecological associations and behavioural strategies paramount for the survival of species.

OPTIMISATION OF MEDIA FOR PRODUCTION OF COST- EFFECTIVE RHIZOBIUM [BIOFERTILIZER

Rhizobium is a soil habitat, gram negative bacterium associated symbiotically with the roots of leguminous plants. Rhizobium helps in the process of nitrogen fixation. Screening and selecting the most effective strain play a key role in the process of biological nitrogen fixation. The present work was undertaken to bring into light different characteristics, growth, isolation, and secretion ofrhizobial strains (bradyrhizobium). These are found in the root region of the leguminous plants where it forms nodules and fix nitrogen. The study revealed that the species used was non-spore forming, rod-shaped, motile, aerobic, gram- negative soil bacterium. These rod-shaped bacteria are 0.8um in diameter and 2um in length, and often have flagellae. These species are non-pathogenic to humans. The rhizobium bacteria were grown on three different types of medias namely – nutrient broth, CRYEMA( Congo Red Yeast Extract Mannitol Agar), and modified media containing jaggery. The common ingredients of the culture media includedPeptone, Meat Extract, Mineral Salts, Carbohydrates and Water. Growth analysis, substrate estimation and biomass estimation was done and yield coefficient was calculated. Rhizobium was then applied as a biofertilizer for good improvement in plant growth and yield. Key Words: Biofertilizers, Biological Nitrogen Fixation, Bradyrhizobium, Inoculants, Leguminous plants, Optimized Media.

Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae.

Free-living amoebae of the Naegleria genus belong to the major protist clade Heterolobosea and are ubiquitously distributed in soil and freshwater habitats. Of the 47 Naegleria species described, N. fowleri is the only one being pathogenic to humans, causing a rare but fulminant primary amoebic meningoencephalitis. Some Naegleria genome sequences are publicly available, but the genetic basis for Naegleria diversity and ability to thrive in diverse environments (including human brain) remains unclear. Herein, we constructed a high-quality Naegleria genus pangenome to obtain a comprehensive catalog of genes encoded by these amoebae. For this, we first sequenced, assembled, and annotated six new Naegleria genomes. Genome architecture analyses revealed that Naegleria may use genome plasticity features such as ploidy/aneuploidy to modulate their behavior in different environments. When comparing 14 near-to-complete genome sequences, our results estimated the theoretical Naegleria pangenome as a closed genome, with 13,943 genes, including 3,563 core and 10,380 accessory genes. The functional annotations revealed that a large fraction of Naegleria genes show significant sequence similarity with those already described in other kingdoms, namely Animalia and Plantae. Comparative analyses highlighted a remarkable genomic heterogeneity, even for closely related strains and demonstrate that Naegleria harbors extensive genome variability, reflected in different metabolic repertoires. If Naegleria core genome was enriched in conserved genes essential for metabolic, regulatory and survival processes, the accessory genome revealed the presence of genes involved in stress response, macromolecule modifications, cell signaling and immune response. Commonly reported N. fowleri virulence-associated genes were present in both core and accessory genomes, suggesting that N. fowleri's ability to infect human brain could be related to its unique species-specific genes (mostly of unknown function) and/or to differential gene expression. The construction of Naegleria first pangenome allowed us to move away from a single reference genome (that does not necessarily represent each species as a whole) and to identify essential and dispensable genes in Naegleria evolution, diversity and biology, paving the way for further genomic and post-genomic studies.

Assessing and monitoring the effects of land cover changes in biodiversity. Case study: Mediterranean coastal region, Sousse, Tunisia

In the Mediterranean regions, habitat degradation, alteration, and even destruction were major causes of the rarefaction of species in their natural environment. In the last decade, these phenomena are further amplified by the reduction of natural vegetation cover, urban sprawl, and climate change. In addition, the degradation of plant cover through cropping, and intensive agricultural practices causes soil erosion, habitat destruction, and loss of biodiversity. While to reduce these risks, it is necessary to assess and monitor Land Use Land Cover changes that will be crucial information for managing natural resources and guiding decision-making processes in their development plans. This is the case of a Mediterranean coastal region, Sousse, Tunisia which is characterized by its landscape diversity and the richness enhanced by the coastal and marine fauna and flora. The methodology is based on the use of Remote Sensing and Geographical Information System where different tools and functions have been employed such as Maximum Likelihood classification validated with field truth, thematic changes using classification change matrix, etc.The establishment of a multi-scalar landscape approach revealed changes in land use on a regional scale between 2007 and 2017. The landscape of Sousse region has been strongly modified by the action of Man where we note a significant growth of built-up areas and a regression of cultivated areas.From 11.84 % to 14.14 %, and from 28.83 % to 21.70 %; respectively. Hence, the growing risk of fragmentation of natural habitats, forests and agricultural areas.The development plan proposed in favor of biodiversity conservation offers a concrete example and can be useful for developing appropriate land use policy for sustainable region in Tunisia and similar Mediterranean regions. This is an essential study for all land use planning proposals as a guide to landscape conservation, enhancement and protection.

A trade-off between space exploration and mobilization of organic phosphorus through associated microbiomes enables niche differentiation of arbuscular mycorrhizal fungi on the same root.

Ecology seeks to explain species coexistence, but experimental tests of mechanisms for coexistence are difficult to conduct. We synthesized an arbuscular mycorrhizal (AM) fungal community with three fungal species that differed in their capacity of foraging for orthophosphate (P) due to differences in soil exploration. We tested whether AM fungal species-specific hyphosphere bacterial assemblages recruited by hyphal exudates enabled differentiation among the fungi in the capacity of mobilizing soil organic P (Po). We found that the less efficient space explorer, Gigaspora margarita, obtained less 13C from the plant, whereas it had higher efficiencies in Po mobilization and alkaline phosphatase (AlPase) production per unit C than the two efficient space explorers, Rhizophagusintraradices and Funneliformis mosseae. Each AM fungus was associated with a distinct alp gene harboring bacterial assemblage, and the alp gene abundance and Po preference of the microbiome associated with the less efficient space explorer were higher than those of the two other species. We conclude that the traits of AM fungal associated bacterial consortia cause niche differentiation. The trade-off between foraging ability and the ability to recruit effective Po mobilizing microbiomes is a mechanism that allows co-existence of AM fungal species in a single plant root and surrounding soil habitat.

Soil saline-alkali heterogeneity is an important factor driving the spatial expansion of clonal plant in grassland

Soil salinity is well known heterogeneous and various within natural soil environment. In Songnen grassland of Northeast China, grazing aggravates the saline-alkali heterogeneity in soil habitat, which led to dominant clonal plant species forming a variety of adaptive strategies. However, based on the previous studies of morphological plasticity and clonal integration in clonal plants, there was a lack of mechanism research on the spatial expansion strategy of clonal plants population subjected to clipping in saline-alkali heterogeneity soil patches. To address this knowledge gap, we carried out an experiment by applying different clipping intensities (0%, 35%, 70% of the above-ground biomass removed) to explore the spatial expansion strategy and morphological plasticity of Leymus chinensis and their belowground rhizomes in different heterogeneous saline-alkali patches. We found that, clipping significantly decreased the plant average height and above-ground biomass in homogeneous patches, especially heavy clipping had a significant adverse impact on plant belowground (rhizome, fine root) biomass and leaf area. However, there was no significant difference in the biomass, average height, and leaf area among the clipping treatments in low saline-alkali heterogeneous patches. In addition, the number of leaves, daughter plants and rhizome internode buds were significantly affected by saline-alkali heterogeneity alone, and low saline-alkali heterogeneity had a positive effect on these parameters. Biomass accumulation and rhizome expansion were gradually inhibited by the increasing of clipping intensity in a homogeneous environment, but the inhibitory effect of clipping was not significant in saline-alkali patches soil. We concluded that L. chinensis can respond to grazing or mowing disturbance by increasing tiller and daughter-plant numbers in a saline-alkali heterogeneous environment. The saline-alkali patches promoted clonal plant population spatial expansion more than grazing or mowing disturbance did. This study emphasizes saline-alkali heterogeneity distribution patterns in grassland soil environment were the primary and important driving factor promoting the spatial expansion of L. chinensis.

Soil bacterial community structure in the habitats with different levels of heavy metal pollution at an abandoned polymetallic mine.

Heavy metal pollution caused by mining activities can be harmful to soil microbiota, which are highly sensitive to heavy metal stress. This study aimed to investigate the response of soil bacterial communities to varying levels of heavy metal pollution in four types of habitats (i.e., tailing, remediation, natural recovery, and undisturbed areas) at an abandoned polymetallic mine by high-throughput 16S rRNA gene sequencing, and to determine the dominant ecological processes and major factors driving the variations in bacterial community composition. The diversity and composition of bacterial communities varied significantly between soil habitats (p<0.05). Heterogeneous selection played a crucial role in shaping the difference of bacterial community composition between distinct soil habitats. Redundancy analysis and Pearson correlation analysis revealed that the total contents of Cu and Zn were key factors causing the difference in bacterial community composition in the tailing and remediation areas, whereas bioavailable Mn and Cd, total nitrogen, available nitrogen, soil organic carbon, vegetation coverage, and plant diversity were key factors shaping the soil bacterial structure in the undisturbed and natural recovery areas. These findings provide insights into the distribution patterns of bacterial communities in soil habitats with different levels of heavy metal pollution, and the dominant ecological processes and the corresponding environmental drivers, and expand knowledge in bacterial assembly mechanisms in mining regions.

桢楠幼苗适应喀斯特岩溶裂隙生境及降雨时间格局变化的方式

PDF HTML阅读 XML下载 导出引用 引用提醒 桢楠幼苗适应喀斯特岩溶裂隙生境及降雨时间格局变化的方式 DOI: 10.5846/stxb202112183590 作者: 作者单位: 作者简介: 通讯作者: 中图分类号: 基金项目: 重庆市自然科学基金面上项目（cstc2020jcyj-msxmX0244）；中央高校基本科研业务费专项（XDJK2020B037）；国家自然科学基金项目（31500399） Phoebe zhennan S. Lee seedlings adjust the biomass allocation and root distribution to adapt to the karst fissure habitat and rainfall temporal pattern Author: Affiliation: Fund Project: General Project of Chongqing Natural Science Foundation(cstc2020jcyj-msxmX0244);Special Funds for Fundamental Scientific Research Operation of Central Universities(XDJK2020B037);National Natural Science Foundation of China(31500399) 摘要 | 图/表 | 访问统计 | 参考文献 | 相似文献 | 引证文献 | 资源附件 | 文章评论 摘要:喀斯特生态系统是全球陆地生态系统的重要组成部分，生态环境极为脆弱。由于碳酸盐岩长期强烈的化学溶蚀作用，其基本特征体现为地表土壤和地下岩溶裂隙及洞穴的二元结构。近年来，在全球气候变化下，我国西南地区降雨格局呈现降雨频次减少且单次降雨量增加的趋势。因此，岩溶裂隙和区域降雨时间格局改变将对喀斯特地区的植物生长产生重要影响。通过模拟不同岩溶裂隙生境（S0：24 cm土壤；S1/2：12 cm土壤层+12 cm裂隙层；S3/4：6 cm土壤层+18 cm裂隙层）和不同降雨时间格局（I2d：2 d降雨间隔；I19d：19 d降雨间隔），探究二年生桢楠（Phoebe zhennan S.Lee）幼苗是否通过生物量分配及根系分布的调整来适应变化环境。结果显示：（1）短时间降雨格局下，相比全土生境，少量岩溶裂隙存在并不影响桢楠幼苗生物量的积累，然而随着岩溶裂隙层进一步增厚和降雨时间间隔延长，桢楠降低了总生物量，减少了茎且增大了根和叶的生物量分配。（2）桢楠幼苗的根系垂直分布随着深度增加而下降，且无论在何种降雨时间格局下，两种岩溶裂隙生境下桢楠均增加了岩溶裂隙之上土壤层的根系生物量分配比例。研究表明：赋存有土壤的岩溶裂隙能成为植物幼苗赖以生存的生境，但这种提供生境的能力随岩溶裂隙层增厚以及降雨时间间隔延长而减弱。桢楠幼苗以牺牲对茎生物量的分配投资为代价，提高对根系或者叶片的生物量投资，同时增大界面土层中的根系分布，来保证最大化地利用有限的土壤资源，从而适应喀斯特的岩溶裂隙（及干旱）生境。 Abstract:Karst is one of the most important fragile ecological environments in globally terrestrial ecosystems. It is basically characterized by the dual structure of surface soil and underground karst fissures and caves, due to the long-term strong chemical dissolution of carbonate rocks. In recent years, under global climate change, the rainfall pattern in southwestern China has shown a trend of decreasing rainfall frequency and greater sub-rainfall. The karst region in southwestern China, which belongs to the subtropical monsoon climate, often suffers from more obvious alternating wet and dry conditions. The underground karst fissures and variation in the temporal pattern of regional rainfall will have a significant impact on plant growth and development in this region. In this study, in order to explore whether the seedlings of Phoebe zhennan S. Lee adjust biomass allocation and root distribution to adapt to the changing environment, we simulated different karst fissure habitats (S0:24 cm soil; S1/2:12 cm soil layer+12 cm karst fractured layer; S3/4:6 cm soil layer+18 cm karst fractured layer) and different rainfall temporal patterns (I2d:rainfall interval of 2 days; I19d:rainfall interval of 19 days), and checked the plants biomass accumulation and allocation, root vertical distribution. The results showed that:(1) under the short-term rainfall pattern, compared with the whole soil habitat, the habitat with a small proportion of karst fissures did not affect the biomass accumulation of P. zhennan seedlings. With the thickening of karst fractured layer and the extension of the rainfall interval, P. zhennan reduced the total biomass, allocating less biomass to stems and more to roots and leaves. (2) The vertical distribution of root system of P. zhennan seedlings decreased with the deepen of soil layer, but increased the root biomass allocation ratio in the soil layer above the karst fissures, regardless of the rainfall temporal pattern. The results show that the fissures hosted soil can be a certain habitat for plants. However, with the thickening of fractured layer and extension of the rainfall interval, the fissures weaken the ability of the habitat. P. zhennan seedlings increase investment to root and leaf at the expense of stem biomass, and increase the root distribution in the interface soil layer above the fissures to ensure the maximum use of limited soil resources so as to adapt to the fissure (and arid) habitat in karst. 参考文献 相似文献 引证文献