Over a billion tons of high-sulfur bauxite has not been utilized effectively currently in China, because the pyrite existing in the bauxite poses a range of hazards during the Bayer process. A novel idea was proposed to remove sulfur by the silicon-containing minerals in bauxite reacting with sulfur species in sodium aluminate solution to form sulfur-bearing desilication products (SDSP) for discharge with the red mud in the Bayer process. This study investigated the reaction behavior between kaolinite and different sulfur-containing ions under the simulated Bayer process conditions, elucidating the desulfurization rate variation and formation mechanism of SDSPs. The thermodynamic calculations suggest that the reaction between kaolinite and sulfur-bearing sodium aluminate solution to form SDSPs can occur spontaneously. The experimental results demonstrated that various SDSPs can be produced through the reaction of kaolinite and sulfur-containing ions in sodium aluminate solution during the simulated Bayer process, resulting in various desulfurization efficiencies, while the desulfurization process will not result in additional alkali consumption. Increasing the kaolinite dosage, extending the reaction time, and elevating the reaction temperature all contribute positively to enhancing desulfurization efficiency. Kaolinite reacted with S2O32− in sodium aluminate solution to generate Na8Al6Si6O24S2O3·2H2O, achieving a desulfurization rate exceeding 90% under optimized conditions. Under the simulated Bayer digestion process conditions at elevated temperature, the desulfurization rates of kaolinite ranked in ascending order as S2− < SO32− < SO42− < S2O32−. Kaolinite reacted with SO42− and S2O32− to form cancrinite type SDSPs, and a superior desulfurization rate can be achieved. This work can provide a theoretical foundation and technological support for the efficient utilization of high-sulfur bauxite by the Bayer process.