Small-scale Genetic Structure Research Articles

Genetic structure shows the presence of small-scale management units in a relict tree species.

Identifying conservation units is crucial for the effective conservation of threatened species. Previous cases are almost exclusively based on large-scale but coarse sampling for genetic structure analyses. Significant genetic structure can occur within a small range, and thus multiple conservation units may exist in narrowly distributed plants. However, small-scale genetic structure is often overlooked in conservation planning especially for wind-pollinated and wind-dispersed trees, largely due to the absence of dense and elaborate sampling. In this study, we focused on a representative endangered relict plant, Metasequoia glyptostroboides. Using both nuclear microsatellites (nSSRs) and chloroplast DNA (cpDNA) fragments, we sampled across the narrow distribution range of this species and determined its conservation units by exploring its genetic structure and historical demography. cpDNA haplotypes were classified into two groups, but mixed in space, suggesting that the existent wild trees of M. glyptostroboides cannot be divided into different evolutionarily significant units. However, using nSSRs, we detected strong spatial genetic structure, with significant genetic differentiation and weak gene flow between the samples in the east of the species' distribution range and other samples. The divergence between the two nSSR groups was dated to the Last Glacial Maximum (c. 19.6 kya), suggesting that such spatial genetic structure has been maintained for a long term. Therefore, these two nSSR groups should be considered as different conservation units, that is, management units, to protect intergroup genetic variations, which is likely to be the outputs of local adaptation. Our findings highlight the necessity to reveal small-scale genetic structure and population demography to improve the conservation strategies of evolutionary potential of endangered plants.

Small-scale genetic structure of populations of the bulb mite Rhizoglyphus robini.

Bulb mites are an economically significant pest of subterranean parts of plants and a versatile laboratory animal. However, the genetic structure of their populations remains unknown. To fill this gap in our knowledge of their biology, we set up a field experiment in which we allowed mites to colonize onion bulbs, and then determined the genetic structure of colonisers based on a panel of microsatellite loci. We found moderate but significant population structure among sites separated by ca. 20m (FST range 0.03-0.21), with 7% of genetic variance distributed among sites. Allelic richness within some bulbs was nearly as high as that in the total population, suggesting that colonisation of bulbs was not associated with strong population bottlenecks. The significant genetic structure we observed over small spatial scales seems to reflect limited dispersal of mites in soil.

Small-scale genetic structure of coral populations in Palau based on whole mitochondrial genomes: Implications for future coral resilience.

The ability of local populations to adapt to future climate conditions is facilitated by a balance between short range dispersal allowing local buildup of adaptively beneficial alleles, and longer dispersal moving these alleles throughout the species range. Reef building corals have relatively low dispersal larvae, but most population genetic studies show differentiation only over 100s of km. Here, we report full mitochondrial genome sequences from 284 tabletop corals (Acropora hyacinthus) from 39 patch reefs in Palau, and show two signals of genetic structure across reef scales from 1 to 55 km. First, divergent mitochondrial DNA haplotypes exist in different proportions from reef to reef, causing PhiST values of 0.02 (p=0.02). Second, closely related sequences of mitochondrial Haplogroups are more likely to be co-located on the same reefs than expected by chance alone. We also compared these sequences to prior data on 155 colonies from American Samoa. In these comparisons, many Haplogroups in Palau were disproportionately represented or absent in American Samoa, and inter-regional PhiST=0.259. However, we saw three instances of identical mitochondrial genomes between locations. Together, these data sets suggest two features of coral dispersal revealed by occurrence patterns in highly similar mitochondrial genomes. First, the Palau-American Samoa data suggest that long distance dispersal in corals is rare, as expected, but that it is common enough to deliver identical mitochondrial genomes across the Pacific. Second, higher than expected co-occurrence of Haplogroups on the same Palau reefs suggests greater retention of coral larvae on local reefs than predicted by many current oceanographic models of larval movement. Increased attention to local scales of coral genetic structure, dispersal, and selection may help increase the accuracy of models of future adaptation of corals and of assisted migration as a reef resilience intervention.

Small-scale population structuring results in differential susceptibility to pesticide exposure

Central European riverine networks are subject to widely varying local anthropogenic pressures, forcing species with limited dispersal abilities to adapt or become locally extinct. Previous catchment-wide studies have shown that some invertebrates tend to have pronounced population structuring throughout mountainous river networks, raising the question of whether this also translates into small-scale phenotypic differentiation and adaptation to local stressors. One such species is the headwater crustacean species Gammarus fossarum clade 11 (or lineage B), which we restudied in terms of population structure four years after first assessment. Our aim was not only to document the temporal stability/dynamics of the population structure, but we asked whether a small-scale genetic structuring also results in phenotypic differentiation and different susceptibility to a commonly applied pesticide. Therefore, we re-assessed population structure based on COI haplotypes and their frequencies, and quantified key parameters related to morphological and life-history differentiation. Furthermore, we examined the difference in sensitivity towards the pyrethroid insecticide deltamethrin. COI haplotype patterns were found to be stable over time and confirmed the small-scale population structuring within the catchment, with isolated headwater populations and connected downstream populations. While little life-history differentiation was observed, marked differences in susceptibility to the pyrethroid insecticide were found. Populations from pristine sites responded significantly more tolerant than populations from anthropogenically impacted sites—showing that prior exposure to a spectrum of stressors does not automatically increase tolerance to a specific stressor. Therefore, our study demonstrates that limited dispersal capacity is reflected not only in population structure, but also in small-scale variation in susceptibility to anthropogenic disturbance. The system thus provides a suitable experimental landscape to test the impact of further stressors (e.g., other novel entities, including pesticides with other modes of action) on locally isolated populations. Based on these findings, important recommendations for the protection of riverine species and their intraspecific genetic variation can be developed.

Temporally stable small-scale genetic structure of Northern pike (Esox lucius) in the coastal Baltic Sea

The Northern pike (Esox lucius) is an important predator in freshwater and brackish water environments. In the Baltic Sea, Northern pike follows isolation by distance pattern across wide geographical scale. However, relatively little is known about the fine-scale population divergence and temporal genetic variation of Baltic pike, especially for populations inhabiting the eastern part of the Baltic Sea. Here, we characterize the population genetic structure of Northern pike and its temporal stability in six freshwater and one brackish water locations on the Island of Saaremaa (Estonia). To accomplish this, we collected 274 young-of-the-year (YOY) of two consecutive cohorts and 218 older specimens that were genotyped using ten microsatellite loci. Our results indicate a temporally stable population differentiation between geographically close locations and reduced diversity of the north-western Saaremaa populations. Furthermore, the correspondence analysis and a discriminant analysis of principal components showed a clear differentiation between north-western and the Gulf of Riga spawning grounds. Our findings support the idea that natal homing behavior, limited dispersal and facultative anadromy in Baltic pike likely promotes the existence of temporally stable genetic divergence among different populations at small geographical scale, representing an essential prerequisite for development of local adaptations. Thus, conservation, management and restoration efforts of coastal Baltic Sea pike should preserve the existing genetic differences between different populations and avoid actions, which potentially increase genetic homogenization.

A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing.

African swine fever virus (ASFV) is the etiological agent of the devastating disease African swine fever (ASF), for which there is currently no licensed vaccine or treatment available. ASF is defined as one of the most serious animal diseases identified to date, due to its global spread in regions of Africa, Europe and Asia, causing massive economic losses. On the Italian island of Sardinia, the disease has been endemic since 1978, although the last control measures put in place achieved a significant reduction in ASF, and the virus has been absent from circulation since April 2019. Like many large DNA viruses, ASFV mutates at a relatively slow rate. However, the limited availability of whole-genome sequences from spatial-localized outbreaks makes it difficult to explore the small-scale genetic structure of these ASFV outbreaks. It is also unclear if the genetic variability within outbreaks can be captured in a handful of sequences, or if larger sequencing efforts can improve phylogenetic reconstruction and evolutionary or epidemiological inference. The aim of this study was to investigate the phylogenetic patterns of ASFV outbreaks between 1978 and 2018 in Sardinia, in order to characterize the epidemiological dynamics of the viral strains circulating in this Mediterranean island. To reach this goal, 58 new whole genomes of ASFV isolates were obtained, which represents the largest ASFV whole-genome sequencing effort to date. We provided a complete description of the genomic diversity of ASFV in terms of nucleotide mutations and small and large indels among the isolates collected during the outbreaks. The new sequences capture more than twice the genomic and phylogenetic diversity of all the previously published Sardinian sequences. The extra genomic diversity increases the resolution of the phylogenetic reconstruction, enabling us to dissect, for the first time, the genetic substructure of the outbreak. We found multiple ASFV subclusters within the phylogeny of the Sardinian epidemic, some of which coexisted in space and time.

Stand out from the Crowd: Small-Scale Genetic Structuring in the Endemic Sicilian Pond Turtle

The geographical pattern of genetic diversity was investigated in the endemic Sicilian pond turtle Emys trinacris across its entire distribution range, using 16 microsatellite loci. Overall, 245 specimens of E. trinacris were studied, showing high polymorphic microsatellite loci, with allele numbers ranging from 7 to 30. STRUCTURE and GENELAND analyses showed a noteworthy, geographically based structuring of the studied populations in five well-characterized clusters, supported by a moderate degree of genetic diversity (FST values between 0.075 and 0.160). Possible explanations for the genetic fragmentation observed are provided, where both natural and human-mediated habitat fragmentation of the Sicilian wetlands played a major role in this process. Finally, some conservation and management suggestions aimed at preventing the loss of genetic variability of the species are briefly reported, stressing the importance of considering the five detected clusters as independent Management Units.

Differential role of a persistent seed bank for genetic variation in early vs. late successional stages.

Persistent seed banks are predicted to have an important impact on population genetic processes by increasing effective population size and storing past genetic diversity. Accordingly, persistent seed banks may buffer genetic effects of disturbance, fragmentation and/or selection. However, empirical studies surveying the relationship between aboveground and seed bank genetics under changing environments are scarce. Here, we compared genetic variation of aboveground and seed bank cohorts in 15 populations of the partially cleistogamous Viola elatior in two contrasting early and late successional habitats characterized by strong differences in light-availability and declining population size. Using AFLP markers, we found significantly higher aboveground than seed bank genetic diversity in early successional meadow but not in late successional woodland habitats. Moreover, individually, three of eight woodland populations even showed higher seed bank than aboveground diversity. Genetic differentiation among populations was very strong (фST = 0.8), but overall no significant differentiation could be detected between above ground and seed bank cohorts. Small scale spatial genetic structure was generally pronounced but was much stronger in meadow (Sp-statistic: aboveground: 0.60, seed bank: 0.32) than in woodland habitats (aboveground: 0.11; seed bank: 0.03). Our findings indicate that relative seed bank diversity (i.e. compared to aboveground diversity) increases with ongoing succession and despite decreasing population size. As corroborated by markedly lower small-scale genetic structure in late successional habitats, we suggest that the observed changes in relative seed bank diversity are driven by an increase of outcrossing rates. Persistent seed banks in Viola elatior hence will counteract effects of drift and selection, and assure a higher chance for the species’ long term persistence, particularly maintaining genetic variation in declining populations of late successional habitats and thus enhancing success rates of population recovery after disturbance events.

The Local Coexistence Pattern of Selfing Genotypes in Caenorhabditis elegans Natural Metapopulations.

To study the interplay of rare outcrossing and metapopulation structure, we focus on the nematode Caenorhabditis elegans. Its remarkably low outcrossing rate is at the extreme end of the spectrum for facultative selfing organisms. At the demographic level, C. elegans natural populations undergo boom and bust dynamics on ephemeral resources, with the dauer diapause larva acting as the dispersal form. Here we investigate the small-scale genetic structure of C. elegans populations in two localities over several years, using 2b restriction-associated DNA sequencing of nearly 1000 individuals. We find a remarkably small number of genome-wide haplotypes, almost exclusively in the homozygous state, confirming the low effective outcrossing rate. Most strikingly, the major haplotypes in a locality remain intact and do not effectively recombine over several years. From the spatial pattern of diversity, we estimate that each subpopulation or deme is seeded by a mean of 3–10 immigrating individuals. Populations are thus formed by clones that compete at two levels, within a subpopulation and at the metapopulation level. We test for the presence of local phenotypic variation in pathogen resistance and dauer larva nictation, which could possibly explain the maintenance of different genotypes by heterogeneous selection in different local environments or lifecycles. This study is the first to address the local spatiotemporal genetic structure of C. elegans on feeding substrates. We conclude that these animals coexist as competing homozygous clones at the smallest population scale as well as in the metapopulation.

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish

Habitat loss and fragmentation often result in small, isolated populations vulnerable to environmental disturbance and loss of genetic diversity. Low genetic diversity can increase extinction risk of small populations by elevating inbreeding and inbreeding depression, and reducing adaptive potential. Due to their linear nature and extensive use by humans, freshwater ecosystems are especially vulnerable to habitat loss and fragmentation. Although the effects of fragmentation on genetic structure have been extensively studied in migratory fishes, they are less understood in low-mobility species. We estimated impacts of instream barriers on genetic structure and diversity of the low-mobility river blackfish (Gadopsis marmoratus) within five streams separated by weirs or dams constructed 45–120 years ago. We found evidence of small-scale (<13 km) genetic structure within reaches unimpeded by barriers, as expected for a fish with low mobility. Genetic diversity was lower above barriers in small streams only, regardless of barrier age. In particular, one isolated population showed evidence of a recent bottleneck and inbreeding. Differentiation above and below the barrier (FST = 0.13) was greatest in this stream, but in other streams did not differ from background levels. Spatially explicit simulations suggest that short-term barrier effects would not be detected with our data set unless effective population sizes were very small (<100). Our study highlights that, in structured populations, the ability to detect short-term genetic effects from barriers is reduced and requires more genetic markers compared to panmictic populations. We also demonstrate the importance of accounting for natural population genetic structure in fragmentation studies.

Small-scale genetic structure in an endangered wetland specialist: possible effects of landscape change and population recovery

The effects of anthropogenic landscape change on genetic population structure are well studied, but the temporal and spatial scales at which genetic structure can develop, especially in taxa with high dispersal capabilities like birds, are less well understood. We investigated population structure in the Hawaiian gallinule (Gallinula galeata sandvicensis), an endangered wetland specialist bird on the island of O`ahu (Hawai`i, USA). Hawaiian gallinules have experienced a gradual population recovery from near extinction in the 1950s, and have recolonized wetlands on O`ahu in the context of a rapidly urbanizing landscape. We genotyped 152 Hawaiian gallinules at 12 microsatellite loci and sequenced a 520 base-pair fragment of the ND2 region of mitochondrial DNA (mtDNA) from individuals captured at 13 wetland locations on O`ahu in 2014–2016. We observed moderate to high genetic structuring (overall microsatellite FST = 0.098, mtDNA FST = 0.248) among populations of Hawaiian gallinules occupying wetlands at very close geographic proximity (e.g., 1.5–55 km). Asymmetry in gene flow estimates suggests that Hawaiian gallinules may have persisted in 2–3 strongholds which served as source populations that recolonized more recently restored habitats currently supporting large numbers of birds. Our results highlight that genetic structure can develop in taxa that are expanding their range after severe population decline, and that biologically significant structuring can occur over small geographic distances, even in avian taxa.

Five years investigation of female and male genotypes in périgord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies.

The Périgord black truffle (Tuber melanosporum Vittad.) is a heterothallic ascomycete that establishes ectomycorrhizal symbiosis with trees and shrubs. Small-scale genetic structures of female genotypes in truffle orchards are known, but it has not yet been studied in male genotypes. In this study, our aim was to characterize the small-scale genetic structure of both male and female genotypes over five years in an orchard to better understand the T. melanosporum sexual reproduction strategy, male genotype dynamics, and origins. Two-hundred forty-one ascocarps, 475 ectomycorrhizas, and 20 soil cores were harvested and genotyped using microsatellites and mating type genes. Isolation by distance analysis revealed pronounced small-scale genetic structures for both female and male genotypes. The genotypic diversity was higher for male than female genotypes with numerous small size genotypes suggesting an important turnover due to ascospore recruitment. Larger and perennial female and male genotypes were also detected. Only three genotypes (1.5%) were found as both female and male genotypes (hermaphrodites) while most were detected only as female or male genotype (dioecy). Our results suggest that germinating ascospores act as male genotypes, but we also proposed that soil mycelium could be a reservoir of male genotypes.

The population genetics of the fundamental cytotype-shift in invasive Centaurea stoebe s.l.: genetic diversity, genetic differentiation and small-scale genetic structure differ between cytotypes but not between ranges

Polyploids are overrepresented in invasive species. Yet, the role of genetic diversity and drift in colonization success of polyploids remains unclear. Here, we investigate genetic diversity, genetic differentiation and small-scale genetic structure in our model system, the three geo-cytotypes of Centaurea stoebe: monocarpic diploids and polycarpic (allo)tetraploids coexist in the native range (Eurasia), but only tetraploids are reported from the invasive range (North America). For each geo-cytotype, we investigated 18–20 populations varying in size and habitat type (natural vs. ruderal). Population genetic analyses were conducted at eight microsatellite loci. Compared to diploids, tetraploids revealed higher genetic diversity and lower genetic differentiation, whereas both were comparable in tetraploids between both ranges. Within spatial distances of a few meters, diploid individuals were more strongly related to one another than tetraploids. In addition, expected heterozygosity in diploids increased with population size and was higher in natural than in ruderal habitats. However, neither relationship was found for tetraploids. The higher genetic diversity of tetraploid C. stoebe may have enhanced its colonization abilities, if genetic diversity is correlated with fitness and adaptive capabilities. Furthermore, the inheritance of a duplicated chromosome set as well as longevity and frequent gene flow reduces drift in tetraploids. This counteracts genetic depletion during initial introductions and in subsequent phases of small or fluctuating population sizes in ruderal habitats. Our findings advocate the importance of studying colonization genetic processes to gain a more mechanistic understanding of the role of polyploidy in invasion dynamics.

Small-scale genetic structure in a stream-dwelling caddisfly in eastern Canada

We used mitochondrial DNA (cytochrome c oxidase subunit I) to examine the population genetic structure and phylogeography for 12 populations of a widely distributed predatory caddisfly (Rhyacophila minor) in small, unconnected streams along a 45-km stretch of North Mountain, Nova Scotia, Canada. We detected patterns of strong genetic subdivision (FST=0.312) with streams separated by &gt;3.5km being significantly different whereas adjacent streams were not (no significant FST values), suggesting some, but very limited, current overland dispersal by adults. A significant phylogeographic break was found between eastern and western populations, corresponding to changes in bedrock and surficial geology. Genetic diversity within the streams was positively correlated with watershed size and the spatial variation in geology. We conclude that genetic divergence among populations of R. minor is a result of dispersal barriers and the accumulation of differences among the streams due to random genetic drift. Our study suggests that a better understanding of how dispersal interacts with landscape features at small spatial scales will improve our ability to link the movement of individuals to ecological and demographic processes.

Population Genetics of Daubenton's Bat (Myotis daubentonii) in the Archipelago Sea, SW Finland

Due to their reclusive nature, information on the population structure of many bat species is lacking or scarce. The pattern of small scale population genetic structure could reveal the degree of gene flow among colonies, and the evolutionary consequences of short-distance dispersal. In this study, we used nine microsatellite loci to assess the small-scale genetic population structure of Daubenton's bats in the Archipelago Sea comparing it to samples from sites elsewhere in Finland and Europe. The Archipelago Sea is a highly variable environment with possible dispersal barriers. Our results indicate a low level of population genetic structuring among the populations sampled. We found significant isolation by distance in both sexes, indicating a gradual increase of population differentiation across a large geographic scale. In Finland alone, isolationby-distance was also found, with high levels of gene flow among local populations. Isolation-by-distance was stronger in females, suggesting that males disper...

Forest fragmentation and edge effects on the genetic structure ofClusia sphaerocarpaandC. lechleri(Clusiaceae) in tropical montane forests

Abstract:Fragmentation of tropical forests influences abiotic and biotic processes that affect the genetic structure of plant populations. In forest fragments, edge effects, i.e. changes of abiotic and biotic factors at forest edges, may be prevalent. In two forest fragments (c. 200 ha atc. 2450 m asl) of tropical montane forest in Bolivia, sympatric populations of the dioecious tree speciesClusia sphaerocarpaandC. lechleriwere used as case study species to compare genetic diversity and small-scale genetic structure (SGS) between edge and interior habitats. Eight microsatellite markers were employed to genotype 343 individuals including adults, juveniles and seedlings ofC. sphaerocarpaand 196 ofC. lechleri. Genetic differentiation was found between habitats in both species (ΦRT= 0.071 forC. sphaerocarpaand ΦRT= 0.028 forC. lechleri) and among ages inC. sphaerocarpa(ΦRT= 0.016). Overall, SGS was weak but significant with more pronounced SGS inC. lechleri(Sp= 0.0128) than inC. sphaerocarpa(Sp= 0.0073). However, positive spatial genetic autocorrelation extended only up to 10 m. ForC. sphaerocarpa, SGS was stronger in seedling and juvenile stages than in adults and in the forest interior than at forest edges. Our results show that edge effects can extend to the genetic level by breaking-up local genetic structures, probably due to increased gene flow and enhanced pollination and seed-dispersal interactions at forest edges.

Dispersal barriers and stochastic reproductive success do not explain small-scale genetic structure in a broadcast spawning marine mussel

Small-scale genetic heterogeneity in marine broadcast spawners is often attributed either to physical factors that constrain larval dispersal or to stochasticity in reproductive success. In females of the mussel Perna perna, it has been attributed to asymmetrical levels of gene flow between bays and the open coast, with bays acting as sources of propagules. If nearshore currents are an important feature constraining dispersal, then genetic heterogeneity should also be identi- fied in other coastal invertebrates with similar dispersal potential, and the amount of genetic struc- ture in adults and juveniles should be similar, whereas temporal changes in reproductive success should manifest themselves in lower genetic diversity of juveniles. We compared sequence data of female P. perna with that of males, juveniles and 3 sympatric marine invertebrates. Congruent genetic structure was only found in a direct developer, suggesting that the region's oceanography does not have a strong structuring effect on species that, like female P. perna, have a planktonic dispersal phase. Furthermore, lack of genetic structure in male and juvenile P. perna indicates that there are no physical barriers that reduce larval exchange. Stochastic reproductive success is also an unlikely explanation for genetic structure in P. perna because levels of genetic diversity are similar in adults and juveniles. Together with the recent finding that the sex ratio in P. perna is skewed toward males, particularly at exposed coastal sites, these results point to a role for selec- tion in driving genetic structure between bays and coastal habitats by eliminating a large propor- tion of adult females from the open coast.

Small-scale genetic structure of Cerastoderma glaucum in a lagoonal environment: potential significance of habitat discontinuity and unstable population dynamics

Environmental heterogeneity in coastal lagoons is expected to facilitate local adaptation in response to different ecological conditions, causing significant genetic structuring within lagoon populations at a small scale and also differentiation between lagoons. However, these patterns and processes of genetic structuring are still poorly understood. The aims of our study were (1) to seek genetic structure at a small scale in Cerastoderma glaucum inside the Mar Menor coastal lagoon using a mitochondrial DNA marker (COI) that has previously detected genetic differentiation inside the lagoon in other species and (2) to evaluate the influence of extreme environmental conditions and habitat discontinuity on its genetic composition. The results indicate high levels of haplotype diversity and low values of nucleotide diversity. COI data provide evidence of significant population differentiation among some localities within the lagoon. Limited gene flow and unstable population dynamics (i.e. fluctuations in population size caused by local extinction and recolonization), probably due to the high environmental heterogeneity, could generate the small-scale genetic divergence detected between populations within the lagoon.

Species diversity and population density affect genetic structure and gene dispersal in a subtropical understory shrub

Aims The dispersal of pollen and seeds is spatially restricted and may vary among plant populations because of varying biotic interactions, population histories or abiotic conditions. Because gene dispersal is spatially restricted, it will eventually result in the development of spatial genetic structure (SGS), which in turn can allow insights into gene dispersal processes. Here, we assessed the effect of habitat characteristics like population density and community structure on small-scale SGS and estimate historical gene dispersal at different spatial scales. Methods In a set of 12 populations of the subtropical understory shrub Ardisia crenata, we assessed genetic variation at 7 microsatellite loci within and among populations. We investigated small-scale genetic structure with spatial genetic autocorrelation statistics and heterogeneity tests and estimated gene dispersal distances based on population differentiation and on within-population SGS. SGS was related to habitat characteristics by multiple regression.

Landscape Dynamics Determine the Small-Scale Genetic Structure of an Endangered Dune Slack Plant Species

Bonte, D.; Breyne, P.; Brys, R.; de la Peña, E.; D'hondt, B.; Ghyselen, C.; Vandegehuchte, M.L., and Hoffmann, M., 2012. Landscape dynamics determine the small-scale genetic structure of an endangered dune slack plant species. Understanding the processes that determine genetic variation within landscapes is a crucial factor for successful management of threatened plant species that are sensitive to both environmental and genetic bottlenecks. While current insights point to the importance of historical landscape processes for the genetic structure of populations at large spatial scales, their relevance at small spatial scales has been largely neglected. In this context, coastal dunes are a typical example of dynamic and geologically young landscapes in which current and historical sand drift may have strong impacts on the spatial dynamics of a large number of plant species. One of these is the endangered plant species Parnassia palustris, typically inhabiting dune slacks formed by recent sand displacements in parabolic dune landscapes. Dune slacks originating from the same sand drift process are located within the same parabola unit. The species is known to suffer from dispersal limitation and from inbreeding when genetic exchange between populations is restricted. By means of amplified fragment length polymorphism, we demonstrate that the species shows a genetic substructuring both at the level of the metapopulation and the local landscape. Populations located within the same parabola unit are much more closely related than expected on the basis of geographic distance. Moreover, population size is related to genetic diversity within populations. The species' population genetic structure should consequently be regarded as a shifting mosaic of genetic variation, mediated by sand drift driven landscape formation. Therefore, the maintenance of sand dynamics is essential to preserve genetic diversity in dynamic dune landscapes.