Conservation Of Sites Research Articles

Timurid, Ottoman, Safavid and Qajar Ceramics: Raman and Composition Classification of the Different Types of Glaze and Pigments

Raw materials significantly determine the final composition and properties of a fired ceramic. Raman analysis which characterizes micro- and nanostructures of (coloured) glazes, opacified or not, was applied to shards mostly collected before the 1960s, currently at the Louvre Museum, originated in Anatolia, the Caucasus, Iran and Central Asia, which are, for most of them, characterized by the use of black lines to separate coloured areas, and dated to the period between the 12th and 19th centuries. Measurements were carried out in the laboratory with a blue laser excitation and/or on the conservation site with a mobile device (green laser). Three types of glazes were identified by their nanostructure of the silicate network: (i) a lead-rich glaze analogous to that of Byzantine, Zirid to Hafsid and al-Andalus productions, (ii) a lead-alkali glaze typical of the Ottoman productions of Iznik-Kütahya, and (iii) a mixed (poor lead/lead-free)-alkali glaze typical of Safavid productions. The colour determines the precise composition of the glaze. The identification is not only based on the signature of the stretching mode of the SiO4 tetrahedron (position of the wavenumber of the component(s)) but also on the position and shape of the continuous luminescence of the Raman background, characteristic of the raw materials used. Lead-tin yellow, Fe-rich, Mn-rich and Cr-rich black pigments and opacifiers made of cassiterite and wollastonite were also identified. The results (type of glaze and deduced processing temperature) were discussed in the light of the ternary phase diagrams visualizing elemental composition determined in previous works and the microstructure examination on the polished section (defining single or multistep firing cycles). Continuity was highlighted on the one hand between the tiles of Bursa, Edirne and Istanbul (Ottoman Iznik-like production) and on the other hand between those of Samarkand area (Timurid) and Iran. The procedure was then applied in the study of three objects (two dishes and a bowl) which are very representative of the productions of the Turkish-Persian cultural areas: a polychrome mina’i cup with decoration representing a rider, an Ottoman Iznik fritware with polychrome floral decoration, and a blue-and-white Safavid ceramic with a decoration representing a shrub.

Comparative Analysis of Rhizospheric Fungi Using High-Throughput Sequencing between Wild, Ex Situ, and Reintroduced Pinus squamata, a Plant Species with Extremely Small Populations in Yunnan Province, China

Pinus squamata is a rare and endangered tree endemic to northeastern Yunnan Province, China, and it is listed as a Plant Species with Extremely Small Populations (PSESP) in China for requiring urgent conservation. Furthermore, the actions of ex situ conservation and reintroduction based on artificial propagation have been carried out since some 15 years ago. The rhizosphere microbiome plays an important role in soil quality and plant health. However, how the fungal communities of the rhizosphere differ between wild, ex situ, and reintroduced examples of Pinus squamata remains unclear. Illumina sequencing of the internal transcribed spacer 2 (ITS2) region was used to investigate fungal communities in the P. squamata rhizosphere soil. Rhizospheric fungal community composition, structure, diversity, and ecological function in the soil surrounding wild, ex situ, and reintroduced P. squamata individuals were elucidated. The ex situ site Kunming (EK) had the highest fungal community richness and diversity. The samples collected from six different sites were well separated (R = 0.95, p = 0.001), suggesting significant differences between the sites. Soil total potassium (TK), available phosphorus (AP), and pH were the main factors driving fungal community (0.01 < p ≤ 0.05). Prediction of fungal functional guild in the P. squamata rhizosphere demonstrated that the fungi could be classified as ectomycorrhizal, endophyte, and plant pathogenic fungi. Our research will provide a basis to guide the further selection of conservation sites for P. squamata based on fungal diversity and offer guidance on the antagonistic fungi and plant pathogenic fungi that may be of relevance to the conservation of this rare plant.

Enhancing semi-aquatic species representativeness beyond protected areas: dragonflies in networks of conservation corridors

Complementarity is crucial when prioritizing sites for biodiversity conservation. Networks of conservation corridors (CCs) can contribute to regional representativeness by complementing biodiversity features included in existing protected areas (PAs). We ask whether criteria important for CC management and design are effective at prioritizing complementary sites, and how the consideration of species represented in PAs influence criteria performance. We focused on species turnover of generalist and specialist dragonflies across 88 riverine sites. Criteria assessed included site-level estimates of dragonfly species richness, estimates of local habitat quality and corridor width. Measures of local habitat quality were based on either dragonfly indicator species or proportion of alien vegetation. Results showed that CCs complement dragonfly diversity in PAs by contributing unrepresented generalist species. Of the criteria, corridor width was the most efficient at prioritizing complementary sites, while prioritization based on dragonfly indicator species or species richness underperformed. When aiming to prioritize CC sites that also complement sites situated in established PAs, wide corridors with low levels of alien vegetation should be favoured.

NewsPanda: Media Monitoring for Timely Conservation Action

Non-governmental organizations for environmental conservation have a significant interest in monitoring conservation-related media and getting timely updates about infrastructure construction projects as they may cause massive impact to key conservation areas. Such monitoring, however, is difficult and time-consuming. We introduce NewsPanda, a toolkit which automatically detects and analyzes online articles related to environmental conservation and infrastructure construction. We fine-tune a BERT-based model using active learning methods and noise correction algorithms to identify articles that are relevant to conservation and infrastructure construction. For the identified articles, we perform further analysis, extracting keywords and finding potentially related sources. NewsPanda has been successfully deployed by the World Wide Fund for Nature teams in the UK, India, and Nepal since February 2022. It currently monitors over 80,000 websites and 1,074 conservation sites across India and Nepal, saving more than 30 hours of human efforts weekly. We have now scaled it up to cover 60,000 conservation sites globally.

Effects of intensive agriculture and urbanization on water quality and pesticide risks in freshwater ecosystems of the Ecuadorian Amazon

The Ecuadorian Amazon has experienced a significant land use change due to the demographic increase and the expansion of the agricultural frontier. Such changes in land use have been associated to water pollution problems, including the emission of untreated urban wastewater and pesticides. Here we provide the first report on the influence of urbanization and intensive agriculture expansion on water quality parameters, pesticide contamination and the ecological status of Amazonian freshwater ecosystems of Ecuador. We monitored 19 water quality parameters, 27 pesticides, and the macroinvertebrate community in 40 sampling locations of the Napo River basin (northern Ecuador), including a nature conservation reserve and sites in areas influenced by African palm oil production, corn production and urbanization. The ecological risks of pesticides were assessed using a probabilistic approach based on species sensitivity distributions. The results of our study show that urban areas and areas dominated by African palm oil production have a significant influence on water quality parameters, affecting macroinvertebrate communities and biomonitoring indices. Pesticide residues were detected in all sampling sites, with carbendazim, azoxystrobin, diazinon, propiconazole and imidacloprid showing the largest prevalence (>80% of the samples). We found a significant effect of land use on water pesticide contamination, with residues of organophosphate insecticides correlating with African palm oil production and some fungicides with urban areas. The pesticide risk assessment indicated organophosphate insecticides (ethion, chlorpyrifos, azinphos-methyl, profenofos and prothiophos) and imidacloprid as the compounds posing the largest ecotoxicological hazard, with pesticide mixtures potentially affecting up to 26–29% of aquatic species. Ecological risks of organophosphate insecticides were more likely to occur in rivers surrounded by African palm oil plantations, while imidacloprid risks were identified in corn crop areas as well as in natural areas. Future investigations are needed to clarify the sources of imidacloprid contamination and to assess its effects for Amazonian freshwater ecosystems.

Alternative ecotourism perspectives within the protected conservation sites and farming communities amid environmental degradation and climate change-bound rural exercises

PurposeThis study aims to examine the latent capability of alternative-responsible tourism and ecotourism management in sustainable tourism and rural communities' livelihoods in Musina Municipality in Limpopo Province, South Africa, and benchmark the capability with other African countries amid climate change and environmental degradation dilemmas. Hence, the aforementioned objective coordinates with various agrarian locations elsewhere abroad.Design/methodology/approachLiterature reviews, document reviews, interviews, and focus group discussions were employed to gather data, which was enriched by field observation views. To this end, potential climate change-linked environmental degradation, rural tourism, agricultural, and environmental management issues came to the fore.FindingsEnvironmental degradation poses a possible threat to natural resource management, as evidenced by the rural development, ecotourism and agricultural activities within the study region. Thereupon, environmental degradation supplements the probability of adverse effects from climate change and precarious incomes. According to the research, responsible tourism and ecotourism are vital to promoting sustainability in rural localities.Originality/valueThe plenteous biodiversity of the municipality offers a better scenario for sustainable ecotourism in tandem with agritourism efforts to address the identified ongoing and liability issues. These issues have therefore symbolized the need for an adequate and allied tourism strategy to boost the local people in Musina Municipality and, conceivably, throughout the continent.

Integrating ecological niche and hydrological connectivity models to assess the impacts of hydropower plants on an endemic and imperilled freshwater turtle

Abstract Hydropower is the main renewable energy source around the globe; however, cumulative impacts of hydropower plants (HPPs) come with vast environmental concerns. As freshwater species are susceptible to hydrodam‐induced environmental modifications, an understanding of how HPPs change species distribution is required to predict and mitigate the impacts of the expansion of hydroelectric matrices generation, securing energy provision and biodiversity conservation. We assessed the impacts of HPPs on the distribution of an endemic and imperilled freshwater turtle with very unique ecological requirements, the Williams' side‐necked turtle Phrynops williamsi. To prevent and mitigate impacts, we prioritized sites for species conservation by classifying planned HPP locations according to their predicted adverse effects on species distribution. We built ecological niche models to estimate the distribution of the species. Then, we contrasted the species distribution with current and planned HPPs in Brazil to (i) verify whether HPPs locations coincide with high suitability areas; (ii) assess the difference in the magnitude of impacts on species caused by HPPs regarding their licensing stage and type; and (iii) identify priority areas for species conservation over the sites where new HPPs are planned based on an integrative analysis of ecological niche and hydrological connectivity models. Finally, we assessed the risk of species extinction at multiple levels according to IUCN criteria. HPPs overlap areas of high suitability for the species, independently of type or licensing stage. Differences in adverse impacts among HPP types were determined by the affected area and the degree of disruption in connectivity. In the future, the area impacted by small HPPs will nearly equal those of large HPPs, which currently have the highest impacts on species. The conservation status of the species partially corroborated previous assessments and suggested that its extinction risk was underestimated at some levels. Synthesis and applications. Our modelling approach highlights potential conflicts between hydropower generation and species conservation. This analysis can be a complementary tool to drive decisions on the ecological sustainability of HPPs; it can reveal the patterns of cumulative impacts of HPPs on riverine species and freshwater ecosystems, informing the planning of sustainable energy provision.

THE WALLED CITY OF VERONA. INTEGRATED SURVEY SYSTEMS FOR THE ENHANCEMENT AND PROMOTION OF VERONA'S CITY WALLS

Abstract. The present study concerns the digital documentation of the city wall of Verona. The "Verona Città Murata" project began in 2015 thanks to the research agreement between the Municipality of Verona (UNESCO office) and the Department of Civil Engineering and Architecture of the University of Pavia. The project stems from the request to develop tools to document the site's conservation to initiate timely restoration, management, and maintenance studies. Measures for protecting, conserving, and enhancing a comprehensive and impressive cultural and natural heritage, such as the Magistral Walls and the Veronese Park, are complex and multifaceted. The multi-disciplinary aspect and the use of flexible tools to manage the information and analyses obtained during the study phase are fundamental. The research aims to optimize the fortified system's acquisition process by validating integrated survey methods and assessing point cloud data's potential, limitations, and planimetric and elevation accuracy (TLS, MLS, UAVs). On the one hand, the research products are aimed to structure a methodology of valuable representation for the documentation and diagnostic and conservative analysis of the artifact; on the other hand, they will become a helpful tool for the narrative description of Verona's fortifications to disseminate and valorize the fabric of military technology.

Long-Term Changes in a Pygmy Cormorant Microcarbo pygmaeus Wintering Population in Southern Bulgaria

Waterbirds are declining globally due to different threats that affect their abundance and shift both their breeding and wintering ranges. Cormorants disperse over vast distances during winter and are suitable indicators of the impacts of human-wildlife interactions and abiotic factors. During wintering periods, Pygmy Cormorants Microcarbo pygmaeus use regular roosts where they overnight on suitable perches, a refuge from adverse weather conditions and disturbances. Our study aimed to determine the wintering population size of the Pygmy Cormorant and its dynamics across 23-years (1996–2019) at seven roosting sites in the Maritsa River valley, Southern Bulgaria. This is a critical site for the species conservation where 3065–8180 birds are wintering annually. The wintering Pygmy Cormorant population showed a tendency to increase between 1996 and 2019 (λ = 1.03 ± 0.001). Each year Pygmy Cormorants were most abundant in December (mean ± SE, 2609 ± 185 individuals), while the lowest numbers were recorded in March (1207 ± 106). Pygmy Cormorants aggregated to roost between 4:00 PM and 5:30 PM throughout the study. The area of wintering foraging habitat of the Pygmy Cormorant increased significantly across all roosting sites in the study period from 2675.97 ha to 22564.35 ha. The number of Pygmy Cormorants at the roost was positively affected by the drop in the daily air mean temperatures and the decrease of the day length. Despite the global population increase, the Pygmy Cormorant faces a high risk of human-induced mortality during wintering and is thus regionally classified as endangered.

The marine avifauna of Matthew and Hunter Islands, two remote volcanoes of the New Hebrides chain

The marine avifauna of Matthew and Hunter Islands, two remote volcanoes of the New Hebrides chain Breeding birds recorded on Matthew and Hunter Islands in the tropical southwestern Pacific between 1973 and 2018 are summarised from a compilation of reports, for which various methods were used for counting seabirds. These methods included line transects, or direct observations using telescope or binoculars, or exhaustive counts, depending on the species observed and its nesting habitat. Population size estimates and reproductive periods are given. The total number of seabird species recorded breeding on the two islands was n = 14. This total includes seabird species breeding on both islands (n = 7): black-winged petrel Pterodroma nigripennis, wedge-tailed shearwater Ardenna pacifica, red-tailed tropicbird Phaethon rubricauda, masked booby Sula dactylatra, brown booby S. leucogaster, brown noddy Anous stolidus, and grey noddy A. albivitta. Hunter island also harbours a small colony of Herald petrel Pterodroma heraldica, and colonies of lesser and great frigatebirds (Fregata ariel and F. minor), red-footed booby S. sula and, black noddy A. minutus and white tern Gygis alba. Matthew Island harbours a large colony of sooty tern Onychoprion fuscatus; an undetermined storm petrel may also breed there. Differences between the two islands regarding community composition of seabirds are explained by the absence of trees on Matthew Island and the presence of the Polynesian rat Rattus exulans on Hunter Island. Brown noddies bred exclusively during the austral summer, as did black-winged petrels and wedge-tailed shearwaters, while the Herald petrel and the two frigatebirds seemed to preferentially breed in the winter. The red-tailed tropicbird, the three boobies, the grey noddy and the sooty tern appeared to reproduce year-round. Disturbance caused by human activities was irregular but devastating to seabird colonies. The diversity and abundance of seabird species breeding on these islands makes them regionally important sites for conservation. Key words: Seabird, Population, Reproduction, Threats, Polynesian rat; Helicopters

Review on Selected Church Forests of Ethiopia: Implication for Plant Species Conservation and Climate Change Mitigation

Forests are known to play an important role in the conservation of biodiversity and regulation of global climate. Global climate is regulated through sequestering and storing much more carbon from the atmosphere due to the presence of forests. However, loss of forest cover and biodiversity due to anthropogenic activities are a growing concern in many parts of the world. The problem of deforestation and loss of biodiversity is more pronounced in developing countries like Ethiopia. Because of deforestation, the species diversity and climate mitigation potential of natural forests are going to be reduced. Thus, patches of Church forests are left and found throughout the degraded landscapes. Because of their religious significance, these forests have been conserved by local communities. They are the only refuge for different plant species and store high amounts of atmospheric carbon. This is due to local communities do have higher respect and trust in them than other local institutions, which has made the Church the central institution and platform for socio-economic issues of the people. As stated by different scholars, around the Church areas, numerous indigenous and International Union for Conservation of Nature red list species existed. In terms of the diversity of species, the forest around the Church has compared to that of a natural forest. Next to the conservation role, the conserved plant species have a significant contribution to climate change mitigation through carbon stock in biomass and soil. Trees in the Church areas have long life history and are higher in stand structure parameters such as height, diameter at breast height, crown diameter, and their carbon storage potential has been maximum. Overall, Church forests are serving as hot spot sites for biodiversity conservation and have a significant role in mitigating climate change by limiting greenhouse gas emissions and increasing the amount of carbon stored in forests.

Nutritional ecology of European rabbit (Oryctolagus cuniculus): Factors affecting chemical composition of gastric content.

Nutritional ecology seeks to unravel the extensive web of nutritional links that directs animals in their interactions with their ecological and social environments. European rabbit (Oryctolagus cuniculus) populations its endemic locations are declining and it is considered a keystone species of the Mediterranean ecosystem prompteing the interest in its conservation. The main aim of this study was to determine the nutritional composition of the diet of European rabbits through the relative and absolute chemical composition of the gastric content. To address this objective, gastric content was collected from 80 European rabbits in a Mediterranean area for the analysis of its chemical composition. To this end, gastric content was analyzed for dry matter (DM), organic matter (OM), ash, crude protein (CP), highly digestible nonnitrogenous nutrients (HDNN), neutral detergent fibre (NDF), acid detergent fibre (ADF) and lignin. The rabbits were divided into two groups: EMPTY and FULL, depending on the level of stomach filling, directly related to food intake. Our results revealed a positive correlation between the rabbits weight with DM in the gastric content, total gastric content with DM in the gastric content, and DM in gastric content with all chemical parameters analysed. The mean relative values obtained were 8.8%, 25.5%, 40.4% and 25.4%, for ash, CP, NDF and HDNN, respectively. Moreover, EMPTY rabbits had both a proportional (+19%, p = 0.002 and -40%; p = 0.004, on NDF and HDNN, respectively) and absolute (-38%, p = 0.014, -52%; p = 0.012, -52%; p = 0.011 and +83%; p = 0.008 for OM, ash, HDNN, and lignin, respectively) different proportion of nutrients in gastric contents than FULL animals. Since there is a connection between this availability and the fitness of this species, understanding the chemical composition of the rabbit's diet can be utilised to delve into its biology. Our study provides information that will help elucidate the factors affecting the chemical composition of the gastric content of European rabbits to assist land use planners and conservationists in identifying sites for conservation in Mediterranean ecosystems.

The role of Indigenous Peoples and local communities in assessment of forest condition, pressures and conservation actions at key forest sites in tropical Asia and New Guinea

Forests in tropical Asia and New Guinea provide local and global benefits to people and are exceptionally rich in biodiversity but they have receded by more than 75% in the past 100 years. This project set out to strengthen effective engagement of non-state actors in forest monitoring, planning and policy processes in Malaysia, Indonesia, the Philippines, and New Guinea, and hence reduce the rate of loss of tropical forests and biodiversity. Monitoring assessments of state, pressure and response were undertaken at key sites for biodiversity conservation using a monitoring protocol established for Important Bird and Biodiversity Areas. Indigenous Peoples and local communities participated in a range of surveillance activities. These assessments were supported by global datasets on tree cover loss and forest integrity. The inputs from Indigenous Peoples and local communities were especially valuable in implementing actions, informing national and regional policies, and in helping them manage their local environment and resources.

Inventory of on-farm sorghum landrace diversity and climate adaptation in Tigray, Northern Ethiopia: implications for sorghum breeding and conservation

The study was conducted with the aim of inventorying and assessing the level of sorghum landraces richness, estimating the extent and patterns of phenotypic diversity, identifying race type, and predicting suitable areas of production using future climate scenarios in Tigray, Northern Ethiopia. Overall, 358 landraces from 125 independent farmers’ fields in 20 districts belonging to four zones of Tigray were surveyed. Landraces richness, frequency of character states, and diversity levels were estimated via Margalef’s, Menhinick’s and Shannon–Weaver (H′) indices for each zone and altitude classes. Suitable areas for sorghum cultivation in the future were predicted using DIVA-GIS. Altogether, 140 distinctly named landraces were identified and collected. Southern zone has the highest richness (DMg = 10.74, DMn = 5.0) followed by central (DMg = 8.54, DMn = 3.80). The estimated H′ for the phenotypic character states ranged from 0.24 (seed form) to 0.95 (rachis branch length). Highest diversity estimate was found in northwest (H′ = 0.71) followed by central zone (H′ = 0.64). Respectively, H′ was 0.70, 0.68, and 0.61 in lowland, intermediate, and highland elevations. In general, lowlands of northwest, central, and southern zones are identified as potential sites for germplasm conservation and utilization. The races durra, bicolor, caudatum, and durra-bicolor were found with durra as the dominant race (79%). All the currently surveyed areas and many other sites in Tigray are predicted to be suitable for future sorghum production under the changing climate scenario. Copies of all the 358 sorghum landraces are deposited in the national gene bank for use in future sorghum breeding work. The wealth of sorghum landraces diversity could be used in sorghum improvement programs.

Penerapan Konsep Solid Nature pada Penataan Ekowisata Mangrove di Gunung Anyar Surabaya

A mangrove forest is an ecosystem that mostly supports life in coastal areas. Its existence is very important because a mangrove forest has a great potential to support the economy, local societies, and environments. Far from the heart of town, there is a region that preserves the biological diversity that is located in Pantai Timur Surabaya in the form of a mangrove forest conservation site. One such example is “Wisata Anyar Mangrove” that was proposed to be the first Mangrove Great Park in Indonesia by the Surabayan Government. Nowadays, sadly we can see that its condition is miserable. Therefore reordering of the “Wisata Anyar Mangrove” to maintain it is a must to mend and improve the “Wisata Anyar Mangrove” area, considering the region will be developed into Mangrove Great Park as an continuous mangrove forest conservation endeavor.

An In silico Approach towards Finding the Cancer-Causing Mutations in Human MET Gene.

Mesenchymal-epithelial transition (MET) factor is a proto-oncogene encoding tyrosine kinase receptor with hepatocyte growth factor (HGF) or scatter factor (SF). It is found on the human chromosome number 7 and regulates the diverse cellular mechanisms of the human body. The impact of mutations occurring in the MET gene is demonstrated by their detrimental effects on normal cellular functions. These mutations can change the structure and function of MET leading to different diseases such as lung cancer, neck cancer, colorectal cancer, and many other complex syndromes. Hence, the current study focused on finding deleterious non-synonymous single nucleotide polymorphisms (nsSNPs) and their subsequent impact on the protein's structure and functions, which may contribute to the emergence of cancers. These nsSNPs were first identified utilizing computational tools like SIFT, PROVEAN, PANTHER-PSEP, PolyPhen-2, I-Mutant 2.0, and MUpro. A total of 45359 SNPs of MET gene were accumulated from the database of dbSNP, and among them, 1306 SNPs were identified as non-synonymous or missense variants. Out of all 1306 nsSNPs, 18 were found to be the most deleterious. Moreover, these nsSNPs exhibited substantial effects on structure, binding affinity with ligand, phylogenetic conservation, secondary structure, and post-translational modification sites of MET, which were evaluated using MutPred2, RaptorX, ConSurf, PSIPRED, and MusiteDeep, respectively. Also, these deleterious nsSNPs were accompanied by changes in properties of MET like residue charge, size, and hydrophobicity. These findings along with the docking results are indicating the potency of the identified SNPs to alter the structure and function of the protein, which may lead to the development of cancers. Nonetheless, Genome-wide association study (GWAS) studies and experimental research are required to confirm the analysis of these nsSNPs.

Identifying priority sites for the on-farm conservation of landraces and systematic diversity monitoring through an integrated multi-level hotspot analysis: the case of potatoes in Peru

IntroductionEffective monitoring of the in situ conservation status and change dynamics of landrace populations in their centers of origin ideally requires the identification of sites that are complementary in terms of the richness, uniqueness and coverage of genetic diversity.MethodsWe applied a 4-step approach to identify sites of high potato landrace diversity which will guide the set-up of a network of complementary prospective conservation observatories in Peru, the potato center of origin. A GIS mapping approach was used to determine which combination of sites would provide the most comprehensive and complementary genepool coverage. A landrace inventory was developed from 49 sources, comprising 47,272 landrace records, 97.1% with coordinates, which was used to derive landrace, cultivated species, and cultivar group richness. Data on known indicators of agrobiodiversity, including potato wild relative concurrence, cultivated area, ecogeographic diversity, and ethnolinguistic diversity were included in the spatial overlay analysis, which was used in conjunction with expert opinion data to provide further insight to hotspot selection.ResultsThirteen hotspots with high, unique, and complementary levels of landrace diversity were identified. We recommend that robust baselines are established, documenting current diversity in these sites using semi-standardized methods and metrics for future tracking.DiscussionOur results, while being the most robust of their kind to date, were inevitably affected by data gaps, infrastructure and hotspot biases. New documentation efforts should record landrace diversity in uncovered regions, as well as explore complementary mechanisms to track the conservation status of unique endemic landraces that occur in coldspots.

Green zones in urban area as potential sites for bird diversity conservation

Green zones in urban area as potential sites for bird diversity conservation

Modelling fish co-occurrence patterns in a small spring-fed river using a machine learning approach

Stopping biodiversity loss due to human activities is of great concern for ensuring ecosystem services for sustainable development. While species-habitat relationships are an important aspect of species conservation, considering species interactions remains challenging in habitat suitability modelling due to the complex nature of the species’ ecology and uncertainties present in ecological data. To cope with this challenge, a Random Forests (RF) multi-class classifier is built using a data set comprised of monthly fish habitat surveys conducted over a period of two years for analyzing the 16 co-occurrence patterns among four fish species, including endangered species and translocated domestic alien species, in a small spring-fed river in Japan. This multi-class habitat suitability model allows for assessing the instream habitat conditions under which multiple species co-occur. Variable importance and partial dependence plots are generated to extract ecological information for a deeper understanding of the species co-occurrence patterns. Results show that the model performance is greatly influenced by data prevalence as reported for single-species habitat suitability models. Ecological information extracted from the RF model illustrates instream habitat conditions that are important for each of the co-occurrence patterns. Such information can be used for prioritizing conservation sites and better designing habitat conditions in order for multiple native species to co-occur or for preventing non-native species to expand their distribution ranges.

An In Silico Functional Analysis of Non-Synonymous Single-Nucleotide Polymorphisms of Bovine CMAH Gene and Potential Implication in Pathogenesis.

The sugar molecule N-glycolylneuraminic acid (Neu5Gc) is one of the most common sialic acids discovered in mammals. Cytidine monophospho-N-acetylneuraminic acid hydroxylase (CMAH) catalyses the conversion of N-acetylneuraminic acid (Neu5Ac) to Neu5Gc, and it is encoded by the CMAH gene. On the one hand, food metabolic incorporation of Neu5Gc has been linked to specific human diseases. On the other hand, Neu5Gc has been shown to be highly preferred by some pathogens linked to certain bovine diseases. We used various computational techniques to perform an in silico functional analysis of five non-synonymous single-nucleotide polymorphisms (nsSNPs) of the bovine CMAH (bCMAH) gene identified from the 1000 Bull Genomes sequence data. The c.1271C>T (P424L) nsSNP was predicted to be pathogenic based on the consensus result from different computational tools. The nsSNP was also predicted to be critical based on sequence conservation, stability, and post-translational modification site analysis. According to the molecular dynamic simulation and stability analysis, all variations promoted stability of the bCMAH protein, but mutation A210S significantly promoted CMAH stability. In conclusion, c.1271C>T (P424L) is expected to be the most harmful nsSNP among the five detected nsSNPs based on the overall studies. This research could pave the way for more research associating pathogenic nsSNPs in the bCMAH gene with diseases.