Site-selective laser spectroscopy has been used to resolve the spectral features of lanthanide fluorescence probe ions in calcium-binding proteins. The capabilities and characteristics of this technique are studied using bovine brain calmodulin where the calcium-binding sites are very similar. Two distinct spectral features are identified. These features were followed during a Eu 3+ titration and were found to fill successively, showing they correspond to the high- and low-affinity sites. One set of spectral features is assigned to domains I and III, which are the high-affinity domains, while the other set is assigned to domains II and IV. Additional nonspecific binding is observed after the domains are filled. Tb 3+ titrations confirmed earlier results that the tyrosine-containing domains fill second and third ( R. W. Wallace, E. A. Tallant, M. E. Duckter, and W. Y. Cheung, 1982, J. Biol. Chem.X 257(4), 1845–1854). Site-selective laser spectroscopy was also used to identify the presence of ethylene glycol bis(β-aminoethyl ether) N,N′-tetraacetic acid contamination that could cause interference in titrations.