Single walled carbon nanotubes (SWNTs) are one of the promising nanomaterials for various applications in nanotechnology. In biomedical fields, hybrids of DNA and SWNT (DNA-SWNT hybrids) are expected to be attractive nanodevices for drug delivery and DNA sensors. For preparing DNA-SWNT hybrids, mixture of SWNT and DNA solutions are prepared via sonication. Although DNA-SWNT hybridization techniques have been established, the diverse sonication conditions in every paper may affect structures of DNA-SWNT hybrids. Here we report a method of monitoring adsorption process of DNA to SWNT surfaces using fluorescent labeled single-stranded DNA (Fluor-ssDNA). It is known that fluorescent emission of fluorescent dyes is quenched when the dye is adsorbed on SWNT surfaces. Using this unique quenching phenomenon, we evaluated adsorption process of Fluor-ssDNA on SWNT surfaces. In the experiments, 0.25 mg of SWNT powder, 50 uL of Fluor-ssDNA solution (1.0 mg/mL in tris (hydroxymethyl aminomethane buffer solution, 200mM, pH 7.5)), and 450 uL of the buffer were mixed, and then sonicated under three different sonication conditions as follows: probe type with amplitude 60% of 130 W (P60), probe type with amplitude 20% of 130 W (P20), and bath type with 80 W (B80). In order to monitor the adsorption process, samples were characterized by fluorescent spectroscopy and atomic force microscopy. In the case of P60, fluorescent intensity of Fluor-ssDNA decreased 98% within 2 min. This suggests that most of Fluor-ssDNA rapidly adsorbed on SWNT surfaces. However, AFM images demonstrated that it took more time to form mono-dispersed DNA-SWNT hybrids. In the case of P20 and B80, 30 min was needed for 98% quenching. In addition, reproducibility of the B80 data was much higher than that of P20. This is an advantage of bath type sonicator.
Read full abstract