Single-chain Folding Research Articles

Self-Adaptive Synthesis of Non-Covalent Crosslinkers while Folding Single-Chain Polymers.

Peptide folding is a dynamic process driven by non-covalent cross-linking leading to functional nanostructures for essential biochemical activities. However, replicating this process in synthetic systems is challenging due to the difficulty in mimicking nature's real-time regulation of non-covalent crosslinking for single-chain polymer folding. Here, we address this by employing anionic dithiol building blocks to create macrocyclic disulfides as non-covalent crosslinkers that adapted to the folding process. Initially, small macrocycles facilitated a low degree folding of a polycation. Then, this preorganized structure catalysed the production of larger macrocycles that enhanced the folding conversely. The self-adaptive synthesis was verified through the encapsulation of an anticancer drug, showing an updated production distribution of non-covalent crosslinkers and maximizing drug-loading efficiency against drug-resistant cancer in vitro. Our research advances the understanding of molecular systems by exploring species evolution via the structural dynamics of polymer folding. Additionally, adaptive synthesis enables controlled, sequential folding of synthetic polymers, with the potential to mimic protein functions.

Visible-Light-Induced Control over Reversible Single-Chain Nanoparticle Folding.

We introduce a class of single-chain nanoparticles (SCNPs) that respond to visible light (λmax =415 nm) with complete unfolding from their compact structure into linear chain analogues. The initial folding is achieved by a simple esterification reaction of the polymer backbone constituted of acrylic acid and polyethylene glycol carrying monomer units, introducing bimane moieties, which allow for the photochemical unfolding, reversing the ester-bond formation. The compaction and the light driven unfolding proceed cleanly and are readily followed by size exclusion chromatography (SEC) and diffusion ordered NMR spectroscopy (DOSY), monitoring the change in the hydrodynamic radius (RH ). Importantly, the folding reaction and the light-induced unfolding are reversible, supported by the high conversion of the photo cleavage. As the unfolding reaction occurs in aqueous systems, the system holds promise for controlling the unfolding of SCNPs in biological environments.

Cascade synthesis of architecture-transformable thermo-labile multisite multiblock copolymers

Multisite multiblock copolymers with variable block number and connection mode obtained by one-shot cascade synthesis can be adopted to generate novel single-chain folding and graft polymers.

Competing single-chain folding and multi-chain aggregation pathways control solution-phase aggregate morphology of organic semiconducting polymers.

Understanding the solution-phase behaviour of organic semiconducting polymers is important for systematically improving the performance of devices based on solution-processed thin films of these molecules. Conventional polymer theory predicts that polymer conformations become more compact as solvent quality decreases, but recent experiments have shown the high-performance organic-semiconducting polymer P(NDI2OD-T2) to form extended rod-like aggregates much larger than a single chain in poor solvents, with the formation of these extended aggregates correlated with enhanced electron mobility in films deposited from these solutions. We explain the unexpected formation of extended aggregates using a novel coarse-grained simulation model of P(NDI2OD-T2) that we have developed to study the effect of solvent quality on its solution-phase behaviour. In poor solvents, we find that aggregation through only a few monomers gives effectively inseparable chains, leading to the formation of extended structures of partially overlapping chains via non-equilibrium assembly. This behaviour requires that multi-chain aggregation occurs faster than chain folding, which we show is the case for the chain lengths and concentrations shown experimentally to form rod-like aggregates. This kinetically controlled process introduces a dependence of aggregate structure on concentration, chain length, and chain flexibility, which we show is able to reconcile experimental findings and is generalisable to the solution-phase assembly of other semiflexible polymers.

Single-chain folding and self-assembling of amphiphilic polyethyleneglycol-modified fluorinated styrene homopolymers in water solution

Amphiphilic tetrafluorostyrene monomers (EFSn) carrying in the para position a polyethyleneglycol (PEG) chain with varied lengths (n = 3–13) were synthesized and polymerized by ARGET-ATRP to obtain the corresponding amphiphilic homopolymers pEFSn-x with controlled and tailored polymerization degrees (x = 8–135). All polymers presented a reversible thermoresponsive LCST-type behavior, in water/methanol mixture when n ≤ 4 or in pure water when n ≥ 8, with a cloud point (Cp) temperature in the range 30–40 °C strictly dependent on the length of the PEG side chain. Combined small angle X-scattering (SAXS) and dynamic light scattering (DLS) measurements were used to study the self-assembly behavior in water of the water-soluble amphiphilic homopolymers. SAXS confirmed the formation of compact-sized and spherical single-chain self-folded nanostructures below Cp, that generally presented small hydrodynamic diameters (Dh ≤ 11 nm) as proven by DLS analysis. Above Cp, much larger multi-chain aggregates were formed (Dh ≥ 800 nm), that reversibly turned back to collapsed nanostructures on cooling below the Cp temperature. By contrast, the polymers were not able to self-assemble in THF or DMF solutions, in which they adopted conventional random coil conformations.

100th Anniversary of Macromolecular Science Viewpoint: Re-examining Single-Chain Nanoparticles.

Single-chain nanoparticles (SCNP) are a class of polymeric nanoparticles obtained from the intramolecular cross-linking of polymers bearing reactive pendant groups. The development of SCNP has drawn tremendous attention since the fabrication of SCNP mimics the self-folding behavior in natural biomacromolecules and is highly desirable for a variety of applications ranging from catalysis, nanomedicine, nanoreactors, and sensors. The versatility of novel chemistries available for SCNP synthesis has greatly expanded over the past decade. Significant progress was also made in the understanding of a structure-property relationship in the single-chain folding process. In this Viewpoint, we discuss the effect of precursor polymer topology on single polymer folding. We summarize the progress in SCNP of complex architectures and highlight unresolved issues in the field, such as scalability and topological purity of SCNP.

Controlling the Chain Folding for the Synthesis of Single-Chain Polymer Nanoparticles Using Thermoresponsive Polymers

Synthetic polymer single-chain nanoparticles (SCNPs) are an emerging new class of nanomaterials that possess similar folded structures as natural proteins. However, most SCNPs reported so far are p...

Stealth and Bright Monomolecular Fluorescent Organic Nanoparticles Based on Folded Amphiphilic Polymer.

Fluorescent nanoparticles (NPs), owing to their superior brightness, are an attractive alternative to organic dyes. However, their cellular applications remain limited because of their large size, poor homogeneity, and nonspecific interactions in biological media. Herein, we propose a concept of monomolecular fluorescent organic nanoparticles of high brightness and very small size (10-14 nm) built of a single amphiphilic polymer bearing specially designed fluorescent dyes. We found that high PEGylation of poly(maleic anhydride-alt-1-octadecene (PMAO) favors a single-chain polymer folding into monomolecular stealth NPs with highly reduced nonspecific interactions with proteins and live cells. To ensure high stability of our NPs, the fluorophores (BODIPYs) are covalently linked to the polymer through an optimized linker. Among tested linkers of different lengths and polarity, a short medium-polar linker favoring location of the dyes at NPs interface ensures good fluorescence quantum yield and small particle size. The fluorescence brightness of these NPs has been dramatically enhanced by increasing the bulkiness of the BODIPY dyes that prevents their H-aggregation, reaching 2500000 M-1 cm-1 (extinction coefficient × quantum yield). Fluorescence microscopy revealed that the single-particle brightness of these NPs is ∼5-fold higher than that of QDot-585 using the same excitation wavelength (532 nm). Finally, when microinjected inside cells, these small and stealth NPs (10 nm diameter) distribute more evenly than 20 nm QDots inside the cytosol, showing similar spreading as a fluorescent protein. Thus, the developed monomolecular NPs, owing to their small size and stealth properties, are artificial analogues of fluorescent proteins, surpassing the latter >50-fold in terms of brightness.

Platinum Atoms Dispersed in Single-chain Polymer Nanoparticles

The intramolecular cross-linking of single polymer chains can form single-chain nanoparticles (SCNPs), which have many applications. In this study, styrenic copolymers with pendent triphenylphosphine as the coordination site for platinum ions (Pt(II)) and benzocyclobutene as the latent reactive groups are synthesized. Triphenylphosphine groups in the chains can coordinate Pt(II) and aid slight single-chain folding in dilute solution. The intramolecular cross-linking caused by the ring-open reaction of benzocyclobutene completes the single-chain collapse and forms stable SCNPs in dilute solution. Pt(II) embedded in SCNPs can be further reduced to platinum atoms (Pt(0)). Pt(0) steadily and atomically dispersed in SCNPs exhibits better catalytic properties than normal polymer carried platinum particles do for the reduction of p-nitrophenol to p-aminophenol.

Morphology transition of amphiphilic homopolymer self-assemblies in water triggered by pendant design and chain length

In this paper, we examined self-assembly of amphiphilic homopolymers bearing the double brush side chains of a hydrophilic PEG and various hydrophobic units including butyl, octyl, dodecyl, octadecyl, and oleyl groups in water. Analyzed by size exclusion chromatography coupled with multiangle laser light scattering, those homopolymers formed uniform micelles, unimer micelles, and large aggregates like rod micelles in water; the morphology depended on the hydrophobic side chains and changed at a certain threshold degree of polymerization (DPth). The homopolymer comprising butyl groups folded into compact micelles via intramolecular association in water, independent of molecular weight. In contrast, the homopolymer carrying octyl groups formed either uniform micelles via multichain association (<DPth) or unimer micelles via single chain folding (>DPth). The homopolymers carrying dodecyl, octadecyl, and oleyl groups exclusively undergo multichain association in water but form either uniform micelles (<DPth) or large aggregates (>DPth). Uniquely, those DPth values decreased with increasing the hydrophobicity of the pendants; more hydrophobic homopolymers tend to form large aggregates at shorter polymer chains. Additionally, those homopolymers with broad molecular weight distribution induced chain length-dependent self-sorting to simultaneously produce uniform micelles and large aggregates in water.

Single-chain folding of a quenched isotactic polypropylene chain through united atom molecular dynamics simulations

The single-chain folding of an isotactic polypropylene (iPP) chain through united atom (UA) molecular dynamics simulations under quenching was investigated using force fields (FFs) based on TraPPE-UA. We estimated the degree of local rigidity of the folded chain along iPP undergoing single-chain folding. To maintain the tacticity of iPP, we introduced improper torsional angle potentials and/or explicit hydrogen atoms bonded to backbone carbon atoms. In the simulation using modified TraPPE-UA FFs with added hydrogen atoms, folded structures were observed. In the cases using modified TraPPE-UA FFs with only improper torsional potentials, folding of the quenched iPP chain was not observed. Moreover, to clarify the folding behavior of the iPP chain, we studied the chirality of a single iPP chain and subsequently observed spontaneous chirality selection during the quenched folding process. We also examined the effect of the angle and torsional potentials of the added hydrogen on the folding behavior of a single iPP chain into local crystals. Therefore, we confirmed that the strength of the angle and torsional potentials contributed to the acceleration of the folding behavior.

Orthogonal Folding of Amphiphilic/Fluorous Random Block Copolymers for Double and Multicompartment Micelles in Water.

Here, we report orthogonal folding and self-assembly systems of amphiphilic/fluorous random block copolymers for double core and multicompartment micelles in water. For this, we developed the precision folding techniques of polymer chains via the selective self-assembly of the pendant groups. Typically, A/C-B/C random block copolymers were designed: Hydrophobic dodecyl groups (A) and fluorous fluorinated octyl groups (B) were introduced into the respective blocks, while hydrophilic poly(ethylene glycol) chains (C) were randomly incorporated into all the segments. By controlling the chain length and composition of the respective blocks, the copolymers induce orthogonal single-chain folding in water to form double-compartment micelles comprising hydrophobic and fluorous cores. The copolymers were site-selectively folded in a fluoroalcohol to result in tadpole unimer micelles comprising a hydrophobic A/C unimer micelle and an unfolded fluorous B/C chain. Additionally, asymmetric A/C-B/C random block copolymers with short and highly hydrophobic or fluorous segments were effective for multicompartment micelles in water.

A novel thermo-responsive multiblock architecture composed of a sequential peptide and an amino acid-derived vinyl polymer: toward protein-mimicking single-chain folding

A novel multiblock architecture composed of an alternating β-sheet forming oligopeptide and a thermo-responsive glycine-derived vinyl polymer was synthesized. The polymer exhibited lower critical solution temperature (LCST) behavior in water, unlike the behavior of a glycine-derived homopolymer, and formed nanoparticles through protein-mimicking folding driven by thermal cycle-induced β-sheet formation.

Strengths and limitations of size exclusion chromatography for investigating single chain folding – current status and future perspectives

Synthetic approaches for Single-Chain Nanoparticles (SCNPs) developed rapidly during the last decade, opening a multitude of avenues for the design of functional macromolecular chains able to collapse into defined nanoparticles. However, the analytical evaluation of the SCNP formation process still requires critical improvements.

Photochemistry in Confined Environments for Single-Chain Nanoparticle Design.

Emulating nature's protein paradigm, single-chain nanoparticles (SCNP) are an emerging class of nanomaterials. Synthetic access to SCNPs is limited by ultralow concentrations, demanding reaction conditions, and complex isolation procedures after single-chain collapse. Herein, we exploit the visible light photodimerization of styrylpyrene units as chain folding mechanism. Critically, their positioning along the polymer chain creates a confined environment, increasing the photocycloaddition quantum yields dramatically, enabling single-chain folding at unrivaled high concentrations without subsequent purification. Importantly, the enhanced photoreactivity allows for single-chain folding at λ = 445 nm LED-irradiation within minutes as well as via ambient light, enabling an unprecedented folding system. The herein demonstrated enhancement of quantum yields by steric confinement serves as a blueprint for all photochemical ligation systems.

Single-Chain Glycopolymer Folding via Host-Guest Interactions and Its Unprecedented Effect on DC-SIGN Binding.

Reversible self-folding actions of natural biomacromolecules play crucial roles for specific and unique biological functions in Nature. Hence, controlled folding of single polymer chains has attracted significant attention in recent years. Herein, reversible single-chain folded glycopolymer structures in α-shape with different density of sugar moieties in the knot were created. The influence of folding as well as the sugar density in the knot was investigated on the binding capability with lectins, such as ConA, DC-SIGN, and DC-SIGNR. The synthesis of triblock glycocopolymers bearing β-CD and adamantane for the host-guest interaction and also mannose residues for the lectin interaction was achieved using the reversible addition-fragmentation chain transfer (RAFT) polymerization technique. The reversible single-chain folding of glycopolymers was achieved under a high dilution of an aqueous solution and the self-assembled folding was monitored by 2D nuclear overhauser enhancement spectroscopy (NOESY) NMR and dynamic light scattering. The lectin binding profiles consistently provided an unprecedented effect of single chain folding as the single-chain folded structures enhanced greatly the binding ability in comparison to the unfolded linear structures.

Single-chain folding of amphiphilic copolymers in water via intramolecular hydrophobic interaction and unfolding triggered by cyclodextrin

Poly(ethylene glycol) methyl ether acrylate (PEGMEA) is copolymerized with 2-(ferrocenecarboxylate ethyl) methacrylate (EMA-Fc) and 4-(propoxy urethane ethyl acrylate) azobenzene (EMA-Azob), respectively. The nanoparticles can be obtained via the single-chain folding of these amphiphilic copolymers with hydrophilic poly(ethylene glycol) (PEG) side chains and hydrophobic ferrocene (or azobenzene) pendant groups in dilute aqueous solution via intramolecular hydrophobic interaction. After the addition of cyclodextrin, the inclusion complex can be formed between cyclodextrin and ferrocene (or azobenzene) pendant groups, which makes the amphiphilic copolymers hydrophilic and triggers the chain unfolding of the nanoparticles in aqueous system. Such kind of process has potential application in the fields of drug delivery systems and their controlled release, sensors, controllable catalysis, mimicry of biomacromolecules, as well as other fields.

Improving the Folding of Supramolecular Copolymers by Controlling the Assembly Pathway Complexity.

A family of amphiphilic, heterograft copolymers containing hydrophilic, hydrophobic, and supramolecular units based on Jeffamine M-1000, dodecylamine, and benzene-1,3,5-tricarboxamide (BTA) motifs, respectively, was prepared via a postfunctionalization approach. The folding of the copolymers in water into nanometer-sized particles was analyzed by a combination of dynamic and static light scattering, circular dichroism spectroscopy, and small-angle neutron scattering. The sample preparation protocol was crucial for obtaining reproducible and consistent results, showing that only full control over the structure and pathway complexity will afford the desired folded structure, a phenomenon similar to protein folding. The results revealed that relatively small changes in the polymer’s graft composition strongly affected the intra- versus intermolecular assembly processes. Depending on the amount of the hydrophobic grafts based on either dodecyl or BTA groups, pronounced behavioral differences were observed for copolymers that comprise similar degrees of hydrophobic content. A high number of BTA grafts (>10%) resulted in the formation of multichain aggregates comprising around six polymer chains. In contrast, for copolymers comprising up to 10% BTA grafts the folding results in nanoparticles that adopt open, sparse conformations and comprise one to two polymer chains. Interestingly, predominantly single-chain polymeric nanoparticles were formed when the copolymer comprised only Jeffamine or Jeffamine and dodecyl grafts. In addition, replacing part of the BTA grafts by hydrophobic dodecyl grafts while keeping the hydrophobic content constant promoted single-chain folding and resulted in the formation of a compact, globular nanoparticle with a more structured interior. Thus, the intra- and intermolecular self-assembly pathways can be directed by carefully tuning the polymer’s hydrophilic–hydrophobic balance in combination with the number of supramolecular grafts.

Facile Synthesis of Multiblock Copolymers Containing Sequence-Controlled Peptides and Well-Defined Vinyl Polymers by Nitroxide-Mediated Polymerization.

Precisely incorporating a wide range of structural and functional multiblocks along a polymer backbone is a significant challenge in polymer chemistry and offers promising opportunities to design highly ordered materials, including controlled polymer folding. Herein, a facile and versatile strategy for preparing functional multiblock copolymers composed of sequential peptides and well-defined vinyl polymers with a narrow polydispersity is reported. Cyclic oligopeptides have been developed that contain an alkoxyamine bond in the framework. By using this type of cyclic initiator, peptide-containing multiblock copolymers are successfully synthesized by nitroxide-mediated polymerization of styrene. To demonstrate the versatility of this method, radical (co)polymerizations were carried out for different monomers (p-chlorostyrene, 4-vinylpyridine, and styrene/acrylonitrile) and by three different cyclic peptide initiators with specific amino acid sequences. The resultant multiblock copolymer is foldable through intramolecular interactions between peptide blocks. It is believed that this approach will significantly advance the field of controlled polymer synthesis for complex structures and single-chain folding.

Thermodynamics and Kinetics of Single-Chain Monellin Folding with Structural Insights into Specific Collapse in the Denatured State Ensemble

Proteins, which behave as random coils in high denaturant concentrations undergo collapse transition similar to polymers on denaturant dilution. We study collapse in the denatured ensemble of single-chain monellin (MNEI) using a coarse-grained protein model and molecular dynamics simulations. The model is validated by quantitatively comparing the computed guanidinium chloride and pH-dependent thermodynamic properties of MNEI folding with the experiments. The computed properties such as the fraction of the protein in the folded state and radius of gyration (Rg) as function of [GuHCl] are in good agreement with the experiments. The folded state of MNEI is destabilized with an increase in pH due to the deprotonation of the residues Glu24 and Cys42. On decreasing [GuHCl], the protein in the unfolded ensemble showed specific compaction. The Rg of the protein decreased steadily with [GuHCl] dilution due to increase in the number of native contacts in all the secondary structural elements present in the protein. MNEI folding kinetics is complex with multiple folding pathways and transiently stable intermediates are populated in these pathways. In strong stabilizing conditions, the protein in the unfolded ensemble showed transition to a more compact unfolded state where Rg decreased by ≈17% due to the formation of specific native contacts in the protein. The intermediate populated in the dominant MNEI folding pathway satisfies the structural features of the dry molten globule inferred from experiments.