Short-chain Polyphosphates Research Articles

Inorganic polyphosphate interacts with ribosomes and promotes translation fidelity in vitro and in vivo

Inorganic polyphosphate is a biological macromolecule consisting of multiple phosphates linked by high-energy bonds. Polyphosphate occurs in cells from all domains of life, and is known to play roles in a diverse collection of cellular functions. Here we examine the relationship between polyphosphate and protein synthesis in Escherichia coli. We report that polyphosphate associates with E. coli ribosomes in vitro. Characterization of this interaction reveals that both long-chain and short-chain polyphosphates interact with the ribosome. Intact 70S ribosomes, as well as 50S and 30S subunits, display a specific interaction with polyphosphate that is mediated primarily by contacts with ribosomal proteins. Additionally, we examined functional consequences of a ppk mutation, which severely reduces levels of intracellular polyphosphate. Extracts from ppk mutants contain lower levels of polysomes than wild-type cells, suggesting a defect in mRNA utilization or the mRNA-ribosome interaction. Ribosomes from wild-type and ppk mutant cells were isolated, and their activities were compared using a polyU RNA in vitro translation assay. While rates of polyphenylalanine synthesis are similar, use of ribosomes from ppk cells results in a misincorporation rate about five times higher compared with the rate observed when ribosomes from wild-type cells are used. Mistranslation rates in vivo were measured directly, and ppk mutants displayed higher readthrough frequencies for two different stop codons. Taken together, these results indicate that polyphosphate plays an important role in maintaining optimal translation efficiency in vivo and in vitro.

Tribofilms generated from ZDDP and DDP on steel surfaces: Part 2, chemistry

The chemical constitution of tribofilms, generated from zinc dialkyldithiophosphate (ZDDP) and ashless dialkyldithiophosphate (DDP), has been examined by X-ray Absorption Near Edge Structure (XANES) spectroscopy. The identification of spectral features and interpretation of the results for P, O, Fe, and S species are given, allowing an overall mechanism to be deduced. The role of Fe in these films was investigated in some detail using P L-edge, O K-edge and Fe L-edge XANES spectra. From the P L-edge XANES spectra, the DDP films are uniformly very short chain iron polyphosphates. In contrast, the ZDDP films are formed initially as short chain polyphosphates; but after more rubbing, a bilayer phosphate film is formed with long chain Zn polyphosphates on the surface and shorter chain in the bulk of the film. The O K-edge XANES spectra show that there is, as expected, more Fe in the DDP phosphate films than in the ZDDP phosphate films. The S K-edge spectra of ZDDP films show the presence not only of ZnS as previously observed, but also the presence of FeS for the first time in the early stages of film formation. The predominant S species in the DDP films is FeS.

Endopolyphosphatase in Saccharomyces cerevisiae undergoes post-translational activations to produce short-chain polyphosphates

Endopolyphosphatase (Ppn), responsible for cleavage of long chain inorganic polyphosphate (poly P) of several hundred residues to generate progressively shorter chains, has been identified in mammalian cells and purified from Saccharomyces cerevisiae. Disruption of the encoding gene, PHM5, in S. cerevisiae resulted in a mutant that showed limited growth and failure to survive in a minimal medium. The limited digestion products of the yeast enzyme Ppn1 judged to be P 3 and P 60 have now, with the homogeneous enzyme and improved separation methods, been demonstrated to be P i and P 3. Ppn1, a homotetramer of a 35-kDa subunit, is of vacuolar origin and requires protease activation of a 78 kDa (674-aa) precursor polypeptide (prePpn1). The protease-processed Ppn1 has been purified 3800-fold to homogeneity and the protease cleavage sites determined. Both termini of prePpn1 and the post-translational modification of N-glycosylations are essential for the protease-mediated maturation of Ppn1.

The Correlation of Microchemical Properties to Antiwear (AW) Performance in Ashless Thiophosphate Oil Additives

X-ray absorption near-edge structure (XANES) spectroscopy at macro-scale (mm 2 ) and X-ray photoelectron emissions microscopy (X-PEEM) at micro-scale (lm 2 ) have been used to investigate the chemistry and spatial distributions of chemical species in tribochemical films generated from ashless thiophosphate oil additives on steel. Two different ashless thiophosphate additives were used: a triaryl monothiophosphate (MTP) and a dialkyldithiophosphate (DTP). Atomic force microscopy (AFM) and secondary electron microscopy (SEM) were also used to investigate the thickness and the topography of the tribofilms. Macro-scale XANES analysis showed that both ashless thiophosphates reacted with the steel surface to produce short to medium chain polyphosphates as the main constituent and sulfur species as minor component. From the PEEM experiment, it was found that the DTP tribofilm was microchemically heterogeneous, with areas of varying degrees of polyphosphate chain length. Conversely, MTP formed a tribofilm microchemically homogeneous, with areas comprised of only short chain polyphosphates. From, the different areas of polyphosphate chain length within the DTP tribofilm, colour-coded polyphosphate distribution map was generated. AFM, X-PEEM and SEM revealed that the DTP film was thicker and was composed of AW pads that were wider in area than MTP. This resulted in a smaller wear scar width (WSW) value for DTP. This is the first time that all these analytical techniques have been combined to better understand the nature of the tribofilms from ashless additives. We have concluded that an ideal AW film is comprised of a thick film with pad-like structures that are wider in area and microchemically heterogeneous, with areas of varying polyphosphate chain length.

Chemomechanical Properties of Antiwear Films Using X-ray Absorption Microscopy and Nanoindentation Techniques

The first chemomechanical comparison between an antiwear film formed from a solution containing zinc dialkyl-dithiophophates (ZDDPs) to a solution containing ZDDP plus a detergent (ZDDPdet) has been performed. X-ray absorption near-edge structure (XANES) analysis has shown a difference in the type of polyphosphate between each film. The ZDDPdet film has been found to contain short-chain polyphosphates throughout. X-ray photoelectron emission microscopy (X-PEEM) has provided detailed spatially resolved microchemistry of the films. The large pads in the ZDDP antiwear film have long-chain polyphosphates at the surface and shorter-chain polyphosphates are found in the lower lying regions. The spatially resolved chemistry of the ZDDPdet film was found to be short-chain calcium phosphate throughout. Fiducial marks allowed for the re-location of the same areas with an imaging nanoindenter. This allowed the nanoscale mechanical properties, of selected antiwear pads, to be measured on the same length scale. The indentation modulus of the ZDDP antiwear pads were found to be heterogeneous, ~120 GPa at the center and ~90 GPa at the edges. The ZDDPdet antiwear pads were found to be more uniform and have a similar indentation modulus of ~90 GPa. A theory explaining this measured difference, which is based on the probing depths of all techniques used, sheds new insight into the structure and mechanical response of ZDDP antiwear films.

Artificial Weathering and Recycling Effect on Intumescent Polypropylenebased Blends

The first part of this work deals with the effect of ageing (artificial weathering) on an intumescent flame-retarded ammonium polyphosphate (APP)/polyamide-6 (PA-6)/polypropylene (PP) blend. The study of the fire properties using the cone calorimeter shows a decrease in the performance caused by the artificial weathering. The chemical modifications of the blends after ageing are investigated by solid state 31P NMR and SEM. It is shown that APP is degraded into ortho-, pyrophosphate and short chain polyphosphates. These modifications lead to the loss of the ammonium contents which could explain the decrease of fire performance. Moreover, some morphological changes appear which may lead to the change of fire and mechanical properties. A classical solution for re-using the material is the recycling. In the second part of this study, we examine the effect of recycling simulated by a multi-extrusion process. This treatment induces modifications which are different from those resulting from the effect of ageing. So, morphological and chemical changes induced by recycling are compared to the effects of ageing. It is shown that after recycling APP is also degraded in the same way as after ageing. In addition to the degradation of APP, a decrease in phosphorous concentration is observed which is attributed to the migration of phosphate species.

Two exopolyphosphatases in Saccharomyces cerevisiae cytosol at different culture conditions

The cytosol of Saccharomyces cerevisiae possesses two polyphosphate-hydrolyzing enzymes with opposite properties. 40 kDa exopolyphosphatase 1 is more active with short-chain polyphosphates and split nucleoside tetraphosphates, while high-molecular exopolyphosphatase 2 is specific to long-chain inorganic polyphosphates. Exopolyphosphatase 1 provide for 90–95% of exopolyphosphatase activity of S. cerevisiae cytosol to the stationary growth stage when the cells are grown at low initial culture density. Exopolyphosphatase 2 is synthesized de novo at re-inoculation of late logarithmic or stationary growth stage cells on the fresh medium with 18 mM orthophosphate and 100 mM glucose using high initial culture density. The contribution of exopolyphosphatase 2 to the total cytosol activity increases to 90% in the stationary growth stage at re-inoculation from a phosphate-limited medium to a complete one. Depending on culture conditions S. cerevisiae become a producer of exopolyphosphatase 1 or exopolyphosphatase 2.

X-Ray Absorption Study of the Effect of Calcium Sulfonate on Antiwear Film Formation Generated From Neutral and Basic ZDDPs: Part 1—Phosphorus Species

Zinc dialkyldithiophosphates (ZDDPs) from very effective antiwear films in boundary lubrication applications. In most cases, however, the ZDDPs do not work alone. They are formulated with many other additives to provide the performance required by today's modern oils. X-ray absorption near-edge spectroscopy (XANES) has been used to study the antiwear films formed from the commonly used combination of ZDDP and calcium sulfonate in both neutral and basic forms. The results are presented in two papers: Part 1 for the phosphorus species and Part 2 for the sulfur species. XANES showed conclusively that in the presence of LOB (low overbased) or HOB (high overbased) calcium sulfonate under sliding conditions, ZDDPs do not form long-chain polyphosphates that have been associated with antiwear action. Instead, short-chain polyphosphates calcium phosphate are formed. The relative amounts of calcium phosphate formed depend on the ester group of the ZDDP: aryl > n-alkyl > sec-alkyl. Interestingly, this order of ester groups is inversely related to the antiwear effectiveness of the ZDDPs. Thus, it is probable that the addition of either LOB or HOB calcium sulfonate to ZDDP will result in a decrease in antiwear effectiveness of the additive mixture compared to the ZDDP by itself. Wear data support this conclusion. It is suggested that the elimination of long-chain polyphosphates and the formation of calcium phosphates in the tribofilm leads to this decrease in antiwear effectiveness, the latter by abrasion of the antiwear film. Presented at the 55th Annual Meeting in Nashville, Tennessee May 7–11, 2000

Chemical characterization of tribochemical and thermal films generated from neutral and basic ZDDPs using X-ray absorption spectroscopy

X-ray absorption near edge structure (XANES) spectroscopy at the phosphorus L-edge and sulphur L-edge has been used to characterize the chemical nature of tribochemical and thermally generated films from several ZDDP antiwear agents in the neutral and basic forms. Using the P and S L-edge XANES spectra of model compounds with known structure as fingerprints, the chemical structures of P and S species in the films have been identified. P appears in all the films as polyphosphates in different proportions of short and long chain polyphosphates. In some films, polyphosphates are accompanied by unchanged ZDDP. Generally films generated from neutral and basic ZDDPs show similar P and S chemistry (polyphosphates and sulphides) but contain different proportions of unchanged ZDDP. However, the aryl ZDDP films have different polyphosphate structure compared to the alkyl ZDDP films. The sulphur proportion in the tribochemical films is decreased a great deal, but remains in the reduced form. However, S in the thermo-oxidatively generated films, appears both in the reduced and oxidized form, depending on the ZDDP and the temperature.

A Novel Method for Determination of Inorganic Polyphosphates Using the Fluorescent Dye Fura-2

A method for determining inorganic polyphosphate, which is based on the Mn2+-induced quenching of the fluorescence of the calcium indicator fura-2, is described. The effect of Mn2+ions on fura-2 fluorescence is gradually abolished in the presence of increasing concentrations of polyphosphate; this allows the quantification both of synthetic polyphosphates and of the naturally occurring polymer isolated from tissues or cells. The described method has some advantages compared to conventional procedures for detection of polyphosphates based on the metachromatic effect on toluidine blue. It can be applied for the determination of pyrophosphate, tripolyphosphate and other short-chain polyphosphates not detectable by toluidine blue and it can be used for measurement both of pyrophosphatase and exopolyphosphatase activity.

Lack of production of (p)ppGpp in Halobacterium volcanii under conditions that are effective in the eubacteria

The stringent halobacterial strain Haloferax volcanii was subjected to a set of physiological conditions different from amino acid starvation that are known to cause production of guanosine polyphosphates [(p)pp Gpp] in eubacteria via the relA-independent (spoT) pathway. The conditions used were temperature upshift, treatment with cyanide, and total starvation. Under none of these conditions were detectable levels of (p)ppGpp observed. This result, in conjunction with our previous finding that (p)ppGpp synthesis does not occur under amino acid starvation, leads to the conclusion that in halobacteria both growth rate control and stringency are probably governed by mechanisms that operate in the absence of ppGpp. During exponential growth, a low level of phosphorylated compounds with electrophoretic mobilities similar, but not identical, to that of (p)ppGpp were observed. The intracellular concentration of these compounds increased considerably during the stationary phase of growth and with all of the treatments used. The compounds were identified as short-chain polyphosphates identical to those found under similar conditions in Saccharomyces cerevisiae.

Isolation and analysis of intact polyphosphate chains from activated sludges associated with biological phosphate removal

A method is described for the isolation of various phosphate species from biological cells of different origin, such as pure and mixed cultures and sludge from wastewater treatment plants with enhanced biological phosphate removal. Extraction and fractionation of phosphates is performed without enzymatic degradation or hydrolysation of inorganic polyphosphates (polyP). Analysis of the polyphosphate was carried out by HPLC with post-column derivatization, by which the P-species could be determined separately. Two different types of phosphate chains could be distinguished: short chain polyphosphates in the range of P2 to P30 and long chain polyphosphates from P30 to above P75. Due to a lack of suitable standards above P75 the upper limit of polyphosphate polymers could not be determined. The distribution of low and high molecular weight polyP depends on the biocenosis of the sludges. Furthermore, it is demonstrated that a mass balance of those phosphate species which take part in the various processes of a biological phosphate removal is possible.

The soybean vegetative storage proteins VSP alpha and VSP beta are acid phosphatases active on polyphosphates.

The soybean vegetative storage protein genes (vspA, and vspB) are regulated in a complex manner developmentally and in response to external stimuli such as wounding and water deficit. The proteins accumulate to almost one-half the amount of soluble leaf protein when soybean plants are continually depodded and have been identified as storage proteins because of their abundance and pattern of expression in plant tissues. We have shown that purified VSP homodimers (VSP alpha and VSP beta) and heterodimers (VSP alpha/beta) possess acid phosphatase activity (alpha = 0.3-0.4 units/mg; beta = 2-4 units/mg; alpha/beta = 7-10 units/mg). Specific activities were determined by monitoring o-carboxyphenyl phosphate (0.7 mM) cleavage at pH 5.5 (VSP alpha) or pH 5.0 (VSP alpha/beta and VSP beta) in 0.15 M sodium acetate buffer at 25 degrees C. These enzymes are active over a broad pH range, maintaining greater than 40% of maximal activity from pH 4.0 to 6.5 and having maximal activity at pH 5.0-5.5. They are inactivated by sodium fluoride, sodium molybdate, and heating at 70 degrees C for 10 min. These phosphatases can liberate Pi from several different substrates, including napthyl acid phosphate, carboxyphenyl phosphate, sugar-phosphates, glyceraldehyde 3-phosphate, dihydroxyacetone phosphate, phosphoenolpyruvate, ATP, ADP, PPi, and short chain polyphosphates. VSP alpha/beta cleaved phosphoenolpyruvate, ATP, ADP, PPi, and polyphosphates most efficiently. Apparent Km and Vmax values at 25 degrees C and pH 5.0 were 42 microM and 2.0 mumol/min/mg, 150 microM and 4.2 mumol/min/mg, and 420 microM and 4.1 mumol/min/mg, for tetrapolyphosphate, pyrophosphate, and phosphoenolpyruvate, respectively.

The mechanism of utilization of polyphosphate by polyphosphate glucokinase from Propionibacterium shermanii.

The phosphorylation of glucose by polyphosphate glucokinase with both long- and short-chain polyphosphates has been shown to occur by either a nonprocessive mechanism, i.e. with repeated association and dissociation of the polyphosphate from the enzyme after each phosphorylation or by a quasiprocessive mechanism in which several phosphorylations occur prior to the release of polyphosphate and the reassociation with the enzyme. In contrast, the phosphorylation of ADP to ATP by polyphosphate kinase is by a strictly processive mechanism; the phosphorylation occurs without release of the polymer from the enzyme prior to termination of the reaction (Robinson, N. A., Clark, J. E., and Wood, H. G. (1987) J. Biol. Chem. 262, 5216-5222). The demonstration that the mechanism is quasi-or nonprocessive was accomplished by electrophoresis using a variety of concentrations of polyacrylamide gels which made it possible to detect the intermediate sizes formed during the reactions. It also has been shown that all chains longer than about 100 are used simultaneously, but with chains of less than 100 residues, there is preferential utilization of the longest chains. Thus a narrow range of sizes is formed from a heterogeneous mixture of long chains. It is this formation of the narrow range of sizes that makes it possible to use polyphosphate glucokinase for the determination of the average size of long chains (Pepin, C. A., Wood, H. G., and Robinson, N. A. (1986) Biochem. Int. 12, 111-123).

The metabolic properties of acid soluble polyphosphates in Saccharomyces cerevisiae.

Tripolyphosphate was found to be the predominant species of soluble polyphosphate in yeast. Evidence is presented which shows that under normal growth conditions tripolyphosphate had little or no turnover. The amounts of the various polyphosphates decreased as the chain length increased. Tetrapolyphosphate was shown to be synthesized more rapidly than tripolyphosphate. These observations suggest that short chain polyphosphates arise by degradation of longer chain length polyphosphates with tripolyphosphate the ultimate degradation product. During nitrogen starvation, the normal accumulation of tripolyphosphate rapidly ceased even though the cells continued normal growth for at least two hours. After the addition of L-amino acids or (NH4)2SO4 to nitrogen starved cells, there was a dramatic increase in the accumulation of tripolyphosphate and tetrapolyphosphate which occurred at the same time as the increase in growth rate. Implications of this result are discussed in terms of possible functions of polyphosphate.

HOT WATER EXTRACTABLE PHOSPHORUS—AN INDICATOR OF NUTRITIONAL STATUS OF PERIDINIUM CINCTUM (DINOPHYCEAE) FROM LAKE KINNERET (ISRAEL)?1

ABSTRACTThe intracellular levels of hot water extractable and total phosphorus were determined in the dinoflagellate Peridinium cinctum. f. westii (Lemm.) Lef. for natural samples from the bloom in Lake Kinneret and from laboratory cultures. Amounts of phosphorus (P) in the hot water fraction, relative to total cellular phosphorus, were similar in lake Peridinium and in cells grown in high ambient orthophosphate (Pi) media (3–6 mg P · l−1). The absolute amounts of hot water extractable P in natural cell and those cultured at lower Pi concentrations (0.02–0.05 mg P · 1−1) were similar, although average Pi in lake water were 4 μg · l−1. Under most growth conditions the hot water extract contained approximately equal amounts of molybdate reactive phosphorus (MRP) and non‐MRP. Short chain (6–9 units) polyphosphates (mol wt 630–950) probably constituted the bulk of the non‐MRP pool, which was hydrolysable by alkaline phosphatase and may serve as a precursor for a more permanent P store. Intracellular P levels and distribution were not directly dependent on external Pi concentrations but may be determined by the N:P atomic ratio or overall external ionic milieu. Peridinium grown in low ambient Pi released significant amounts of non‐MRP compounds. In Lake Kinneret, for at least most of the bloom period, Peridinium does not appear to be limited by P supply.

The clinical significance of skeletal scintigraphy in the management of carcinoma

The majority of skeletal metastases originate via localization in the bone marrow. A study of the various 99Tc m polyphosfate complexes available for skeletal scintigraphy suggests that the use of short chain polyphosphates with a significant bone marrow uptake is advantageous in detecting skeletal metastases at an early stage.