In adverse sea conditions, changes in the propeller emergence depth can cause propulsion load fluctuations, resulting in significant variations in ship-integrated power systems (IPS). These fluctuations can severely affect the power quality of ships and the operational efficiency of electrical devices. To develop appropriate mitigation measures against the impact of wind and waves on IPS, a comprehensive model that can simulate the response characteristics of the hull and IPS for different heading angles in different sea conditions is necessary. This paper presents an integrated multi-system dynamic model capable of simulating the response characteristics of a ship's hull and its IPS under the wind and waves interference. A novel method is proposed to estimate propeller thrust and torque loss directly from the ship's pitch and roll angles. Utilizing this dynamic model, the responses characteristics of the hull and IPS in varying sea conditions have been investigated. The findings demonstrate that the model accurately captures variations in ship motions, as well as IPS voltage and frequency, under wind and waves interference. Additionally, this study explores the application of a hybrid energy storage system (HESS) to enhance the IPS power quality in the context of Sea State (SS) 7. Results indicate that the HESS has good potential to compensate for propulsion load fluctuations, thereby mitigating the negative impacts on the ship's IPS.