Shannon Diversity Index Research Articles

Fungal diversity associated with the decomposition of Avicennia marina leaf litter at various salinity levels

Abstract. Yunasfi, Susetya IE, Utomo B, Dalimunthe A, Samsuri, Zaitunah A. 2024. Fungal diversity associated with the decomposition of Avicennia marina leaf litter at various salinity levels. Biodiversitas 25: 792-800. The process of litter decomposition in mangrove ecosystem is influenced by both biological and environmental factors. Biological factors include organisms, such as worms, snails, bacteria, and fungi, while environmental factors are soil, water pH, salinity, and others. Therefore, this study aimed to determine the effect of salinity level and length of decomposition period, dominant fungi, as well as carbohydrate and protein levels in Avicennia marina leaf litter. In the experiment, litter bags containing 50 g of A. marina leaf litter were used and placed at salinity levels of <10 ppt, 11-20 ppt, and 21-30 ppt. The results showed that the highest decomposition rate i.e., 6.90/year, with length of time = 0.15 years was found in A. marina leaf litter at a salinity level of 21 ppt-30 ppt. At salinity levels of <10 and 10-20 ppt, the decomposition rate was 4.55 and 5.91, respectively, while the litter period in soil was 0.22 and 0.17 years. Furthermore, the residual leaf litter decomposed at salinity levels of <10 ppt, 11-20 ppt, and 21-30 ppt was 6.67 g, 4.57 g, and 4.36 g, respectively. The average value of the Shannon diversity Index for fungal species in A. marina leaf litter, which had experienced decomposition ranged from low to moderate. At salinity levels of <10 ppt, 10-20 ppt, and 20-30 ppt, the values obtained were 1.96, 1.86, and 1.95 respectively. The fungal species diversity index was greater than the control, 1.26. Based on the results, A. marina leaf litter placed at salinity level of <10 ppt had the highest carbohydrate and protein content of 12.10 and 9.12%, respectively, while the lowest protein content of 8.28% was recorded at salinity level of 20-30 ppt. This study showed that the longer the decomposition period at various levels of salinity, the higher the protein content in absolute terms.

Genetic diversity and phylogeography of Japanese brome (Bromus japonicus Thunb. ex Murr.) populations in China

Japanese brome (Bromus japonicus Thunb. ex Murr.) is a pervasive annual weed with wide distribution in winter wheat fields across the North China Plain. In this study, we researched the genetic diversity and phylogeography of 24 B. japonicus populations in China based on total genomic DNA and chloroplast DNA. The results showed that 106 fragments were scored using 12 inter-simple sequence repeat (ISSR) primers, and 101 fragments (95.28%) were polymorphic. The findings revealed substantial genetic diversity and differentiation among populations from different locations (Ht = 0.2125, Hs = 0.0730, Gst = 0.6562 and Nm = 0.2619). Mean values of Nei’s genetic diversity (H) and Shannon index of diversity (I) were 0.0731 and 0.1068, respectively. In addition, 15 haplotypes were identified based on combined cpDNA regions among the 24 populations exhibiting abundant haplotype (gene) diversity and nucleotide diversity. The AMOVA based on ISSR and cpDNA both showed that genetic variation mainly exists among populations rather than within them. The STRUCTURE analysises of ISSR and cpDNA indicated that geographical location and genetic relationship had no significant correlation. The haplotype network also illustrated that the widespread haplotypes (H1, H2) might represent ancient polymorphism. The results obtained in this study demonstrate the presence of extensive genetic variability among and within the Chinese populations of B. japonicus, which is likely to contribute significantly to its adaptability and infestation as a weed species.

Community composition of the entomopathogenic fungal genus Metarhizium in soils of tropical and temperate conventional and organic strawberry fields

Studies on community composition and population structure of entomopathogenic fungi are imperative to link ecosystem functions to conservation biological control. We studied the diversity and abundance of Metarhizium spp. from soil of conventionally and organically farmed strawberry crops and from the adjacent field margins in two different climatic zones: Brazil (tropical) and Denmark (temperate), using the same isolating methods. In Brazilian strawberry soil, Metarhizium robertsii (n = 129 isolates) was the most abundant species, followed by M. humberi (n = 16); M. anisopliae (n = 6); one new taxonomically unassigned lineage Metarhizium sp. indet. 5 (n = 4); M. pingshaense (n = 1) and M. brunneum (n = 1). In Denmark, species composition was very different, with M. brunneum (n = 33) being isolated most commonly, followed by M. flavoviride (n = 6) and M. pemphigi (n = 5), described for the first time in Denmark. In total, 17 haplotypes were determined based on MzFG543igs sequences, four representing Danish isolates and 13 representing Brazilian isolates. No overall difference between the two climatic regimes was detected regarding the abundance of Metarhizium spp. in the soil in strawberry fields and the field margins. However, we found a higher Shannon's diversity index in organically managed soils, confirming a more diverse Metarhizium community than in soils of conventionally managed agroecosystems in both countries. These findings contribute to the knowledge of the indigenous diversity of Metarhizium in agricultural field margins with the potential to contribute to pest regulation in strawberry cropping systems.

Diversity and Composition of Belowground Fungal Communities Associated with Picea abies L. (H.) Karst. and Larix sp. Mill.: A Comparative Study

The aim of the presented study was to compare the diversity and composition of fungal communities associated with the roots and the rhizosphere soil of P. abies and Larix sp. in mid-age and mature managed forest stands in Lithuania. We also aimed to assess the presence of fungi–host-specific associations, i.e., whether Larix sp. stands could provide habitats for soil fungi currently associated with P. abies. The study sites were 10 Larix sp. and 10 P. abies forest stands in Lithuania. For the study, 100 root samples and 10 organic and 10 mineral soil samples were collected in P. abies stands as well as the same number in Larix sp. stands, and DNA was isolated, amplified using ITS2 rDNA as a marker and subjected to high-throughput sequencing. The results showed that the Shannon diversity index of fungal communities was similar between the two tree species when compared either between root (H = 4.26 P. abies and H = 3.82 Larix sp.), organic soil (H = 5.12 P. abies and H = 5.13 Larix sp.) or mineral soil (H = 4.71 P. abies and H = 4.29 Larix sp.) samples. Multivariate analysis showed that the fungal community composition in the organic and mineral soil samples of both P. abies and Larix sp. were similar, and thus, overlapping. The analysis also showed that the distribution of fungal species was denser in the roots and organic soil but more scattered in mineral soil. However, several fungi in the roots of either P. abies or Larix sp. showed a certain host specificity.

Digenea community structure of the Salema, Sarpa salpa (Linnaeus, 1758) (Teleostei, Sparidae), from the Central coast of Algeria.

The main goal of the current work was to describe and analyse the Digenean community structure in Sarpa salpa. A total of 114 specimens of S. salpa were collected from the Central Coast of Algeria at six localities. The fish were immediately transported to the laboratory to be examined for digeneans. From 107 of the 114 S. salpa examined, a total of 8,722 specimens of seven species belonging to three families were recovered. Among them, Robphildollfusium fractum and Mesometra orbicularis were the most prevalent and abundant species. Moreover, Lepocreadium album was found for the first time in S. salpa from the coast of Algeria, and Centroderma spinosissima and Wardula capitellata represent new parasites to the Algerian digenean fauna that infect teleost fish. The component community of these Digeneans is characterised by R. fractum as its dominant species representing 62% of the total number of collected Digeneans, as well by a Shannon diversity index (H') and Dominance Simpson index (D) of 1.03 and 2.23, respectively. According to Spearman's correlation test, Mesometra brachycoelia and W. capitellata were negatively correlated to the host biological factors. On the other hand, R. fractum showed a positive correlation between its mean abundance and the total length of the fish. With these findings, we provided the component structure of the Digenean fauna of S. salpa and highlighted their diversity, contributing to the biodiversity of the parasitic Platyhelminthes in Algeria.

Gut microbiome diversity and composition in individuals with and without extended-spectrum β-lactamase-producing Enterobacterales carriage: a matched case–control study in infectious diseases department

ObjectiveLittle is known about the effect of gut microbial and extended-spectrum β-lactamase-producing Enterobacterales (ESBL-E) carriage, particularly in the general population. The aim of this study was to identify microbiota signatures uniquely correlated with ESBL-E carriage. MethodsWe conducted a case–control study among individuals seeking care at the Sexual Health Clinic or Department of Infectious and Tropical Diseases, Saint-Antoine Hospital, Paris, France. Using coarsened exact matching, 176 participants with ESBL-carriage (i.e. cases) were matched 1:1 to those without ESBL-carriage (i.e. controls) based on sexual group, ESBL-E prevalence of countries travelled in <12 months, number of sexual partners in <6 months, geographic origin, and any antibiotic use in <6 months. 16S rRNA gene amplicon sequencing was used to generate differential abundances at the genus level and measures of α- and β-diversity. ResultsParticipants were mostly men (83.2%, n = 293/352) and had a median age of 33 years (interquartile range: 27–44). Nine genera were found associated with ESBL-E carriage: Proteus (p < 0.0001), Carnobacterium (p < 0.0001), Enterorhabdus (p 0.0079), Catonella (p 0.017), Dermacoccus (p 0.017), Escherichia/Shigella (p 0.021), Kocuria (p 0.023), Bacillus (p 0.040), and Filifactor (p 0.043); however, differences were no longer significant after Benjamini–Hochberg correction (q > 0.05). There were no differences between those with versus without ESBL-E carriage in measures of α-diversity (Shannon Diversity Index, p 0.49; Simpson Diversity Index, p 0.54; and Chao1 Richness Estimator, p 0.16) or β-diversity (Bray–Curtis dissimilarity index, p 0.42). DiscussionIn this large carefully controlled study, there is lacking evidence that gut microbial composition and diversity is any different between individuals with and without ESBL-E carriage.

Enhancing river health assessment: Innovations and applications of the AquaShan Index

This study introduces the AquaShan Index, an innovative approach to assessing river health, which integrates biological indicators with key environmental variables. This index represents an advancement over traditional methods, like the Shannon Diversity Index, by including both species diversity and environmental factors such as dissolved oxygen, pH, and water temperature. Utilizing data from the Stream/River Ecosystem Survey and Health Assessment in South Korea, covering 5,952 data over three years, the study combines species data of benthic macroinvertebrates with environmental parameters, applying Random Forest analysis to weight these variables. The AquaShan Index formula incorporates species’ pollution tolerance scores, offering a nuanced perspective on ecosystem resilience to environmental stressors. Our results show a wide range of river health conditions, with the AquaShan Index demonstrating greater sensitivity and specificity in identifying ecological impairments compared to traditional indices. The inclusion of pollution tolerance scores and environmental variables provides a more comprehensive assessment of river health, revealing a higher number of sites with ecological challenges than previously identified. The AquaShan Index's adaptability and comprehensive approach make it a valuable tool for informed decision-making in river conservation and management, offering an enhanced methodology for assessing and sustaining river ecosystem health.

Analysis of the structure of phytoplankton communities in the ecological monitoring of Lake Zaozernoe (Russia)

In this work, the taxonomic composition, biodiversity, abundance, biomass, ecological features of planktonic algae and water quality in Lake Zaozernoye of the Pskov Region were studied a year after the territory was recognized as a natural monument. A twofold increase in the species richness of plankton was revealed, a two-fold decrease in representatives of the Euglenozoa phylum and a 40% decrease in representatives of Cyanobacteria. 145 phytoplankton taxa ranked below the genus from 8 phylums have been identified: Bacillariophyta (50 species taxa), Chlorophyta (36), Ochrophyta (18), Cyanobacteria (12), Euglenozoa (12), Miozoa (8), Cryptophyta (5) and Charophyta (4). The biomass was dominated by diatoms and cryptophytic algae. Toxic cyanobacteria species Aphanocapsa delicatissima and Aphanothece sp. have been identified among the dominant species in terms of numbers. 2 rare species of algae have been identified for reservoirs in the Northwestern region – Anabaena sphaerica Bornet Flahault (Cyanobacteria) and Phacus monilatus (A. Stokes) Lemmerman (Euglenozoa). The analysis of species diversity using the Sierensen–Chekanovsky, Shannon, Simpson, and Margalef diversity indices revealed changes in the structure of the plankton community in different areas of the lake. The species composition of Zaozernoye is compared with the lakes closest to it.

Preliminary checklist on species composition of small mammals and birds in Marine Research Excellence Centre (MAREC), Pulau Tuba.

Located in Langkawi archipelago, Andaman Sea, Pulau Tuba is one of the islands that is densely protected as a forest reserve. We investigated and documented the species composition of small mammals and birds at two different sites in the forest of UiTM Marine Research Excellence Centre (MAREC). Wire cage traps were used to capture non-volant small mammals while mist nets were used to capture bats and understorey birds. A total of 35 individuals were captured consisting of four species of small mammals and four species of birds. Among the most abundant species captured were Rattus tiomanicus, Leopoldamys sabanus and Cynopterus brachyotis. The calculated Shannon diversity index was 1.58 indicating a low diversity of small mammals and birds within the area. Our current study stipulated that few individuals were caught due to the rainy season affecting Pulau Tuba during the study period. Further surveys and studies should be conducted for a longer period in different seasons so that more species of fauna can be documented.

Vertically stratified interactions of nectarivores and nectar-inhabiting bacteria in a liana flowering across forest strata.

Vertical stratification is a key feature of tropical forests and plant-frugivore interactions. However, it is unclear whether equally strong patterns of vertical stratification exist for plant-nectarivore interactions and, if so, which factors drive these patterns. Further, nectar-inhabiting bacteria, acting as "hidden players" in plant-nectarivore interactions, might be vertically stratified, either in response to differences among strata in microenvironmental conditions or to the nectarivore community serving as vectors. We observed visitations by a diverse nectarivore community to the liana Marcgravia longifolia in a Peruvian rainforest and characterized diversity and community composition of nectar-inhabiting bacteria. Unlike most other plants, M. longifolia produces inflorescences across forest strata, enabling us to study effects of vertical stratification on plant-nectarivore interactions without confounding effects of plant species and stratum. A significantly higher number of visits were by nectarivorous bats and hummingbirds in the midstory than in the understory and canopy, and the visits were strongly correlated to flower availability and nectar quantity and quality. Trochiline hummingbirds foraged across all strata, whereas hermits remained in the lower strata. The Shannon diversity index for nectar-inhabiting bacterial communities was highest in the midstory. Our findings suggest that vertical niche differentiation in plant-nectarivore interactions seems to be partly driven by resource abundance, but other factors such as species-specific preferences of hummingbirds, likely caused by competition, play an important role. We conclude that vertical stratification is an important driver of a species' interaction niche highlighting its role for promoting biodiversity and ecosystem functioning.

Effects of protein concentration and beta-adrenergic agonists on ruminal bacterial communities in finishing beef heifers.

To improve animal performance and modify growth by increasing lean tissue accretion, beef cattle production has relied on use of growth promoting technologies such as beta-adrenergic agonists. These synthetic catecholamines, combined with the variable inclusion of rumen degradable (RDP) and undegradable protein (RUP), improve feed efficiency and rate of gain in finishing beef cattle. However, research regarding the impact of beta-adrenergic agonists, protein level, and source on the ruminal microbiome is limited. The objective of this study was to determine the effect of different protein concentrations and beta-adrenergic agonist (ractopamine hydrochloride; RAC) on ruminal bacterial communities in finishing beef heifers. Heifers (n = 140) were ranked according to body weight and assigned to pens in a generalized complete block design with a 3 × 2 factorial arrangement of treatments of 6 different treatment combinations, containing 3 protein treatments (Control: 13.9% CP, 8.9% RDP, and 5.0% RUP; High RDP: 20.9% CP, 14.4% RDP, 6.5% RUP; or High RUP: 20.9% CP, 9.7% RDP, 11.2% RUP) and 2 RAC treatments (0 and 400 mg/day). Rumen samples were collected via orogastric tubing 7 days before harvest. DNA from rumen samples were sequenced to identify bacteria based on the V1-V3 hypervariable regions of the 16S rRNA gene. Reads from treatments were analyzed using the packages 'phyloseq' and 'dada2' within the R environment. Beta diversity was analyzed based on Bray-Curtis distances and was significantly different among protein and RAC treatments (P < 0.05). Alpha diversity metrics, such as Chao1 and Shannon diversity indices, were not significantly different (P > 0.05). Bacterial differences among treatments after analyses using PROC MIXED in SAS 9 were identified for the main effects of protein concentration (P < 0.05), rather than their interaction. These results suggest possible effects on microbial communities with different concentrations of protein but limited impact with RAC. However, both may potentially act synergistically to improve performance in finishing beef cattle.

Implications of palustrine wetland configuration on the biodiversity of urban aquatic macroinvertebrate communities

Abstract Aquatic macroinvertebrates (AM) have a special ecological niche in the functionality of urban wetland communities. This class of animals also play a crucial role in urban environmental and water quality assessments through bio-indication and bio-monitoring. However, the continued loss and isolation of palustrine wetlands, driven by urbanization and other anthropogenic processes, result in reduced biodiversity of macroinvertebrate communities. This study sought to determine how palustrine wetland configuration affect biodiversity structure of AM in Nairobi. Wetland configuration attributes of area, perimeter, shape, and edge were examined. For wetland biodiversity, family richness and Shannon index of diversity were assessed. It was hypothesized that wetland configuration affects the biodiversity of AM. From a population of 303 wetlands, this study used heterogeneous sampling to identify and investigate 31 palustrine wetlands spread across the city of Nairobi. Data were collected using observation checklists and archival review. Correlations and multiple regression analysis were performed in IBM SPSS Statistics 21. It was found that wetland configuration significantly affected the biodiversity of AM at R2 = 0.587, F (6, 23) = 5.447, P &amp;lt; 0.001. The study highlights the need to identify the optimum wetland configuration pattern for the biotic enhancement and conservation of AM in palustrine wetland habitats in urban landscapes. Consequently, the ecological stability of urban wetland communities, their accessibility, as well as the innate affection by urban residents, become a desired conservation goal in urban planning and design.

Deep learning models for monitoring landscape changes in a UNESCO Global Geopark

By identifying Earth heritage sites, UNESCO Global Geoparks (UGGps) have promoted geo-tourism and regional economic prosperity. However, commercial and tourism development has altered the natural contexts of these geoparks, diminishing their initial value. Before implementing land use policies, spatial landscape parameters should be monitored in multiple dimensions and in real time. This study aims to develop Bilateral Segmentation Network (BiSeNet) models employing an upgraded U-structured neural network in order to monitor land use/cover changes and landscape indicators in a Vietnamese UGGp. This network has proven effective at preserving input image data and restricting the loss of spatial information in decoding data. To demonstrate the utility of deep learning, eight trained BiSeNet models were evaluated against Maximum Likelihood, Support Vector Machine, and Random Forest. The trained BSN-Nadam model (128x128), with a precision of 94% and an information loss of 0.1, can become a valuable instrument for analyzing and monitoring monthly changes in land uses/covers once tourism activities have been rapidly expanded. Three tourist routes and 41 locations in the Dak Nong UGGp were monitored for 30 years using three landscape indices: Disjunct Core Area Density (DCAD), Total Edge Contrast Index (TECI), Shannon's Diversity Index (SHDI), based on the results of the model. As a result, 18 identified geo-sites in the Daknong Geopark have been influenced significantly by agricultural and tourist activities since 2010, making these sites less uniform and unsustainable management. It promptly alerts UNESCO management to the deterioration of geological sites caused by urbanization and tourist development.

Enhancing ecological complexity in soft‐bottom coastal ecosystems: the impact of introducing hard substrates

Coastal ecosystems globally face pressures, with natural coastal habitats being replaced by engineered structures. While hard structures for navigation‐purposes and coastal defense can negatively impact native communities, they can also be applied in ecological restoration as artificial reefs. This way substrates may facilitate establishment of biogenic (shellfish) reefs and provide habitat heterogeneity in soft‐sediment ecosystems. In a 1.5‐year experiment, we introduced six different types of natural or biodegradable hard substrates in a subtidal soft‐sediment system. We compared the substrates with surrounding soft sediment and evaluated differences among substrate types using biodiversity indices, community composition analyses, and food web indicators. This offers a comprehensive understanding of how the introduced hard substrates affect ecosystem complexity. Overall ecological complexity indicators were higher in the second year of the experiment. We found a significant increase in species richness, community composition, and link density (number of feeding interactions per species) on hard substrates compared to the surrounding sediment. However, Shannon diversity index and food web connectance (measure of food web saturation) did not differ between substrates and the surrounding sediment. Although differences among types of hard substrates were small, certain species were uniquely associated with specific substrates with wood and granite performing best. While there was no establishment of epibenthic shellfish reefs within 1.5 years, we conclude that introducing hard substrates effectively enhances ecological complexity in soft‐bottom coastal ecosystems within that timeframe. We recommend the use of substrates with a historical ecological relevance in the system for scaling up introduction of substrates for ecological restoration.

The effect of an attractant toxic sugar bait (ATSB) incorporating &lt;em&gt;Bacillus thuringiensis israelensis &lt;/em&gt;and methoprene on mosquito populations

Background: The threat posed by mosquito-borne diseases continues to increase globally. The increase of pesticide resistance is impacting vector control and public health globally. The development and testing of new pesticides faces several challenges, e.g., time for development, high cost, and regulatory hurdles. Adapting pesticides that are currently used within integrated vector management can help alleviate these challenges. Methoprene has demonstrated reduction of larval populations and fecundity in adult mosquitoes. The objective of the study was to demonstrate the efficacy of ProVector Entobac with methoprene (Entobac M) on mosquito populations in rural sites in Southeastern Georgia. Methods: ProVector® Military Camouflage Tubes with ProVector Entobac M pesticide were placed in a grid at test sites. A positive control test site and a negative control site were used to compare results statistically. Mosquito diversity and evenness among sites were measured using Shannon Diversity Index and Equitability. Results: Deployment of ProVector® Military Camouflage Tubes with ProVector Entobac M pesticide was effective in reducing total mosquito populations. The mosquito species shared among the test sites and positive control site were similar, and the negative control site was least similar in diversity and evenness. There was variation of control within Aedes, Anopheles, and Culex genera. Discussion: The aim of the study was to demonstrate the efficacy of the ProVector Military Camouflage Tube delivery of Entobac with methoprene (Entobac M) on mosquito populations. Mosquito-borne diseases are an increasing threat to communities around the world due to invasive species and global warming. In previous studies, ProVector® Entobac™ has been validated in laboratory and field studies to control both adult and larval mosquitoes in the United States and several other countries. Application of ecofriendly and target specific pesticides with no-resistance is critical in reducing mosquito populations and the risk of vector-borne diseases. Our study demonstrated a significant decrease in adult mosquito populations due to the utilization of a target specific mosquito larvicide that has been adapted to kill adult mosquitoes.

Effect of probiotics and prebiotics on the composition of the equine fecal and seminal microbiomes and sperm quality: A pilot study

Probiotic and prebiotic effects on equine semen and gastrointestinal microbiome composition and sperm quality are unknown. This study aimed to evaluate the effects of pre-, pro- or synbiotic supplementation on fecal and semen microbiome composition and sperm quality parameters of stallions. This Latin square crossover trial involved four miniature pony stallions receiving control diet only, or addition of a pro-, pre- or synbiotic formulation. Full-length 16S rRNA gene amplicon sequencing was used to measure diversity of semen and fecal microbiomes. Total sperm count, total motility, progressive motility, DNA integrity, lipid peroxidation and mitochondrial oxidative stress, biomarkers of sperm quality, were measured after each intervention. A general linear model was employed to analyse and compare microbiome diversity measures and sperm quality data across four time points. Shannon's diversity index (alpha-diversity), and evenness of semen and gastrointestinal microbiomes were significantly different (p<0.001). A trend was observed for prebiotic effects on the diversity indices of the GI microbiome (p= 0.07). No effects of treatments were observed on either semen microbiome or sperm quality. Pre-, pro- and synbiotic supplements showed no negative effect on sperm quality parameters observed. This proof of concept provides preliminary data to inform future studies exploring the relationship between microbiomes and fertility.

Quantifying Spatiotemporal Characteristics and Identifying Influential Factors of Ecosystem Fragmentation in Karst Landscapes: A Comprehensive Analytical Framework

Guanling-Zhenfeng County, a microcosm of the ecologically fragile karst area in southwest China, experiences rapid population growth and urban expansion which intensifies land use transformation and ecological landscape fragmentation. Exploring the spatiotemporal characteristics of landscape fragmentation and its causes in Guanling-Zhenfeng County is of great significance in maintaining the stability of the ecosystem and ecological protection in karst areas. In this study, a comprehensive landscape fragmentation index (FI), geographic probe, multi-scale geographically weighted regression (MGWR), and PLUS model were used to quantitatively explore the spatiotemporal characteristic heterogeneity, causes, and future scenario projections of landscape fragmentation in Guanling-Zhenfeng County from 2000 to 2020. The results showed that: (1) the distribution of each landscape index was characterized by obvious spatial differentiation. Among them, the spatial distribution trends of patch density (PD) and largest patch index (LPI) were opposite and the distribution trends of Shannon diversity index (SHDI) and Shannon evenness index (SHEI) were similar. There were fewer heterogeneous patches in the study area from 2000 to 2020, and the landscape shape was more regular and less fragmented. (2) The overall landscape fragmentation in Guanling-Zhenfeng County from 2000 to 2020 was dominated by moderate fragmentation, with the smallest percentage of extreme fragmentation, and heavy fragmentation was mainly distributed in the north-central part of the study area. (3) Natural and social factors jointly affect the landscape fragmentation in Guanling-Zhenfeng County, and there is a significant interactive enhancement effect among the factors, with population density being the most important influence factor. In addition, the effects of the factors on landscape fragmentation showed significant spatial non-stationarity. (4) The characteristics of landscape fragmentation changes in Guanling-Zhenfeng County under different scenarios varied significantly, with the largest percentage of increase in heavy landscape fragmentation under the business-as-usual scenario (BAU), the next under the land use planning scenario (LUP), and the smallest under the ecological protection scenario (ESP).

The Vaginal Microbiome Changes During Various Fertility Treatments.

This study aimed to investigate the influence of hormonal treatment on the vaginal microbiome during fertility treatments. Bacterial vaginosis (BV) could affect fecundity, particularly in the in vitro fertilization (IVF) population, where negative effects on pregnancy outcomes have been reported. It is hypothesized that the hormone treatment during fertility treatments could influence the abundance of Lactobacilli, with negative effects on the pregnancy results. A total of 53 couples attending a fertility clinic in the Netherlands between July 2019 and August 2022 were included in this prospective cohort study. Vaginal samples were collected at start of treatment, oocyte retrieval or insemination from subjects undergoing intra uterine insemination (IUI) with mild ovarian stimulation, and IVF or intra cytoplasmatic sperm injection (ICSI) with controlled ovarian hyperstimulation. AmpliSens® Florocenosis/Bacterial vaginosis-FRT qPCR and 16S rRNA gene-based amplicon sequencing were performed on all samples. In total, 140 swabs were analyzed, with a median of two swabs per person. 33 (24%) tested qPCR BV positive. Lactobacilli percentage decreased during fertility treatments, leading to changes in the vaginal microbiome. Shannon diversity index was not significantly different. Of the total of 53 persons, nine switched from qPCR BV negative to positive during treatment. The persons switching to qPCR BV positive had already a (not significant) higher Shannon diversity index at start of treatment. If the vaginal microbiome of persons deteriorates during fertility treatments, timing of following treatments, lifestyle modifications, or a freeze all strategy could be of possible benefit.

The Influence of Bioclimates and Soil Physicochemical Properties on Bacterial and Archaeal Communities from Forest Ecosystems in Côte d’Ivoire (West Africa)

Archaea and bacteria communities play pivotal roles in tropical forest ecosystems’ functioning, especially nutrient cycling, plant phenology, and health. The objective of this study was to explore the diversity of archaeal and bacterial communities in forest soil ecosystem of Côte d’Ivoire and to identify abiotic factors that influence their composition. Using high-throughput amplicon sequencing targeting the V4V5 hypervariable region of the 16S ribosomal RNA gene, we analyzed 22 soil samples taken from the 2 main forest areas of Côte d’Ivoire, namely the semi-deciduous moist forest and the evergreen moist forest, both of which are located in the humid and sub-humid areas of the country. The analysis revealed that the biodiversity at the phyla level was congruent with previous studies. Richness and Shannon diversity indices revealed the dominance of bacteria over archaea in all studied soils. Moreover, the predominant bacterial community consisted of Proteobacteria (29.8%), Acidobacteria (15.5%), and Actinobacteria (14.2%), while the archaeal community was dominated by Thaumarchaeota (1.93%). However, at the genus level, patterns emerged. The most abundant and ubiquitous members at the genus level included Bradyrhizobium, Rhodoplanes, Bacillus (bacteria), and Nitrosophaera (archaea). While bacterial core microbiome members were found in almost all soils, Nitrososphaera genus were selective to sub-humid bioclimate and cropland land use. These patterns were correlated to the soils’ physicochemical characteristics, bioclimate, and land use. This study sheds light on the intricate relationships between abiotic factors and microbial communities in Côte d’Ivoire’s forest soils and helps to identify keys species for future soil management.

Exploring the Influence of Slope Gradient on Tree Species Richness and Forest Structure

Slope gradient is a critical environment factor influencing the abundance, distribution and diversity of vegetation. The objective of this study was to exploring the influence of slope gradient on tree species richness and forest structure in Kpatawee forest, Liberia. Tree diameter was measured at breast height for species more than 5 cm in diameter and over 3 m in height. Tree species diversity was analyzed using Shannon diversity index (Hˈ). Basal area (BA) which is the cross-sectional area of tree stems was measured through the diameter at breast height that is 1.3 m above ground level. Results showed that a total of 26 tree species were identified from the total sampling area (0.36 ha). The three richest families: Moraceae, Rutaceae and Euphorbiaceae appear to be well represented in the Kpatawee forest. These families become outnumbered in the herbaceous except for the Rutaceae family, which is ranked second. This is mainly due to their adaptation potential to wider agro-ecologies. Tree species richness was higher in the lower altitude. High species abundance was recorded in the lower altitude followed by the middle and upper. The lowest Shannon diversity index value (H' = 1.85) and the highest value (H' = 2.28) were recorded in the upper, and the lower altitudes, respectively. Despite their values, the biodiversity did not vary greatly from altitude to altitude. Diameter class distribution showed that more species were in the lower diameter classes and decreased gradually towards the higher classes. It is recommended that further studies on the entire Kpatawee forest is needed to fully understand the species richness in the forest.