The Influence of Bioclimates and Soil Physicochemical Properties on Bacterial and Archaeal Communities from Forest Ecosystems in Côte d’Ivoire (West Africa)

Abstract

Archaea and bacteria communities play pivotal roles in tropical forest ecosystems’ functioning, especially nutrient cycling, plant phenology, and health. The objective of this study was to explore the diversity of archaeal and bacterial communities in forest soil ecosystem of Côte d’Ivoire and to identify abiotic factors that influence their composition. Using high-throughput amplicon sequencing targeting the V4V5 hypervariable region of the 16S ribosomal RNA gene, we analyzed 22 soil samples taken from the 2 main forest areas of Côte d’Ivoire, namely the semi-deciduous moist forest and the evergreen moist forest, both of which are located in the humid and sub-humid areas of the country. The analysis revealed that the biodiversity at the phyla level was congruent with previous studies. Richness and Shannon diversity indices revealed the dominance of bacteria over archaea in all studied soils. Moreover, the predominant bacterial community consisted of Proteobacteria (29.8%), Acidobacteria (15.5%), and Actinobacteria (14.2%), while the archaeal community was dominated by Thaumarchaeota (1.93%). However, at the genus level, patterns emerged. The most abundant and ubiquitous members at the genus level included Bradyrhizobium, Rhodoplanes, Bacillus (bacteria), and Nitrosophaera (archaea). While bacterial core microbiome members were found in almost all soils, Nitrososphaera genus were selective to sub-humid bioclimate and cropland land use. These patterns were correlated to the soils’ physicochemical characteristics, bioclimate, and land use. This study sheds light on the intricate relationships between abiotic factors and microbial communities in Côte d’Ivoire’s forest soils and helps to identify keys species for future soil management.