In July 2023, the International Maritime Organization (IMO) set a target to achieve net-zero greenhouse gas emissions by 2050, introducing key measures such as the Energy Efficiency Design Index (EEDI), the Energy Efficiency Existing Ship Index (EEXI), and the Carbon Intensity Indicator (CII). The maritime industry explored adaptations, including engine de-rating, energy-efficient technologies, and propeller modifications, and beyond. This study assessed the safety implication of a redesigned shafting system, resulting in a propeller redesign to enhance the CII and EEXI on a 6500 TEU container ship built in 2006. Through an analysis of annual output per TEU from 2000 to 2015, the study focused on container ships built from 2005 to 2007 with high-output engines (9.4–9.5 kW/TEU). After selecting a sample ship, the study determined engine power limits according to the EEXI regulations and assessed their impact on the CII. Subsequently, the study redesigned the shafting system, performing torsional vibration calculations and shaft alignment analyses to ensure the safety of the modified system. While an enhanced CII rating was predicted, the tightening CII regulations imply this benefit may be short-lived, lasting approximately two years. Thus, additional measures are essential to prolong the improved CII rating.