Leptospirosis is a zoonosis transmitted through contact with water or soil contaminated by urine from animal reservoirs. It is typically a mild acute febrile illness, however about 10% of patients progress to severe disease with a case fatality rate of 5-20%. This study aims to establish a clinical prediction tool that would predict the risk of progression to mortality in patients presenting to health care providers with signs and symptoms of leptospirosis. This is a retrospective case-control study on survivors and non-survivors due to severe leptospirosis admitted at our institution. Logistic regression was performed to identifysignificant predictors of mortality. A scoring system was generated and validated using the same patient population. A total of 383 patients were included in the study, 327 survivors and 56 (14.6%) non-survivors. Significant factors associated with mortality include history of hypertension (OR=3.72, 95%CI=1.16-8.91), diabetes (OR=15.46, 95%CI=4.58-52.21), presence of oliguria (OR=3.43, 95%CI=1.75-6.73), hemorrhage (OR=2.61, 95%CI=1.22-5.61), hypotension (OR=2.27, 95%CI=1.20-4.33), respiratory rate >20cpm (OR=1.87, 95%CI=1.06-3.31), crackles (OR=4.02, 95%CI=0.74-2.04), edema (OR=4.79, 95%CI=1.83-12.50), thrombocytopenia <100x103/uL (OR=3.80, 95%CI=2.11-6.83), prolonged partial thromboplastin time >45 seconds (OR=2.94, 95%CI=1.61-5.38), acidosis pH<7.30 (OR=5.11, 95%CI=2.60-10.05), atrial fibrillation (OR=11.62, 95%CI=4.48-30.14), and radiographic pulmonary congestion/edema (OR=3.78, 95%CI=1.82-7.81). A weighted scoring system was assigned and four risk categories of increasing severity and percent mortality was formed and can be used as an adjunct to guide clinical decision-making and prioritization of resources. Patients with score 0-2, mortality risk 2.42%, can be discharged with advice, or admit to a primary hospital. Patients with score 3-5, mortality risk 19.51%, can be referred or admitted to a tertiary hospital with an interim leptospirosis ward. Patients with a score of 6-8 and mortality risk 42.86%, recommend transfer to a more equipped ward with close monitoring for occurrence of complications, and possible transfer to the Intensive Care Unit (ICU). Lastly, patients with score >9 have a high mortality risk (81.82%), thus transfer to ICU. In conclusion, a clinical prediction score for mortality in severe leptospirosis is developed from the major prognostic risk factors, which may prove useful in triaging patients in the event of another leptospirosis outbreak.