The accurate and sensitive detection of methyl mercaptan (CH3SH) was of great significance for food corruption monitoring. Electroactive labels engineered electrochemical sensors possessed tailorable electrochemical responses, and showed potential prospects for CH3SH monitoring. In comparison to a single electrochemical signal, electroactive nanocomposites with multiple electrochemical responses not only provided multi-channel sensing signals for accurate detection, but also increased the peak intensity for sensitive detection. Herein, RuPt NPs were designed and explored to possess two independent and non-interfering electrochemical oxidation peaks at 0.75 V and -0.73 V. The formation of metal-SH covalent bonds between electroactive sites of RuPt NPs and CH3SH induced the changes of two electrochemical oxidation peaks. By utilizing the sum intensity of two electrochemical peaks as detection signal, a dual-channel electrochemical sensor was established for CH3SH detection in the range of 1 μM-1 mM, and had a low limit of detection (LOD) of 300 nM. This work gave a new insight into promoting more electroactive nanocomposites with multiple signals for accurate and sensitive electrochemical detection applications.