The spatiotemporal patterns of water travelling through the soil–plant-atmosphere continuum (SPAC) have received much attention due to the frequency of extreme weather and water scarcity. However, the interconnections and transboundary transport of specific compartments within the hydrologic cycle are poorly understood. We portrayed the propagation paths of water isotope signals by analyzing isotopes of precipitation, soil water, and xylem water. The isotope sine curves analysis method was improved to quantify water transfer efficiency, mean transmission time from precipitation to soil (MTT1), mean transmission time from soil to trees (MTT2), mean residence time within soil (MRTSW), and mean residence time within tree xylems (MRTXY). The temporal trajectory of water traveling through SPAC was depicted, and its influencing factors and intrinsic mechanisms were explored. Our results showed that (1) water isotopes were blocked when crossing water pools (precipitation, soil water, and xylem water) and the transfer efficiency was progressively weaker (85.5 %→13.5 %). (2) The MTT1 was significantly and positively correlated with soil porosity (Spearman correlation coefficient, 0.551). Its spatiotemporal pattern (0.8–15.9d) indicated that the transport and mixing of soil water involved two modes: displacement flow and bypass flow. The MTT2 (−13.2d–4.3d) of Platycadus orientalis was in general smaller than that of Quercus variabilis (−4.7d–11.5d). (3) The MRT (35.2d–343.8d) was influenced by a combination of soil physicochemical properties, root distribution, and tree morphological traits. Our study shows that connectivity between pools is better reflected with transfer efficiency. Comparing MTT and MRT of P. orientalis and Q. variabilis, tree hydrodynamic processes were quantified, and P. orientalis was more sensitive to seasonal moisture variability. Additionally, our study improved the understanding of the “black box” within the hydrological interface of plant-soil interactions.