Scanning Tunneling Microscopy Images Research Articles

Topologically engineering of π-conjugated macrocycles: Tunable emission and photochemical reaction toward multi-cyclic polymers

The topology of conjugated macrocycles had significant impacts on their photo-physical and photo-chemical properties. Herein, a series of π-conjugated macrocycles with diverse topology were synthesized via intramolecular McMurry coupling. Their chemical structure and macrocyclic topology were unambiguously confirmed via NMR, MALDI-TOF mass spectra, crystal analysis and scanning tunneling microscopy (STM). Depending on the structural topology and structural rigidity, these cyclic compounds display obviously distinctive emission behavior and photochemical reactions in the solution and in the solid state. Monocyclic phenylene vinylene macrocycle (denoted as MST) exhibiting aggregation-induced emission behavior, was more vulnerable to photo-cyclization in solution and triplet sensitizer promoted photo-dimerization due to lower strain and more flourishing intramolecular motions. After UV light irradiation, relatively more flexible MST could yield the anti-dimer via triplet excimer on the HOPG surface confirmed by STM investigation. By contrast, highly constrained bicyclic analogue (named as DMTPE) with central tetraphenylethene core, displayed high emission quantum yields of 68% both in solution and in the solid state, and was relatively inert to photochemical reactions and yield syn-dimer on the surface via singlet excimer involved [2 + 2] photo-dimerization. Based on the solution-mediated photo-polymerization of MST moiety, multicyclic porous carbon-rich ribbon connected with four-membered ring was successfully constructed and validated via STM imaging.

Another Piece of the Ionic Liquid's Puzzle: Adsorption of Cl- Ions.

Classical electrochemical and microscopy methods were used to characterize the interfacial processes of the adsorption of chloride ions from ionic liquids at the Bi(111) single crystal electrode. The mixture of 1-ethyl-3-methylimidazolium tetrafluoroborate and 1-ethyl-3-methylimidazolium chloride was electrochemically characterized by using cyclic voltammetry and electrochemical impedance spectroscopy. In situ scanning tunneling microscopy images showed the formation of superstructures at the electrode's surface over an extended period of time. The specific adsorption of chloride ions reaches an equilibrium state in a more viscous ionic liquid medium slower than in aqueous and organic solvents. Capacitance values increase considerably (also depending on alternative current frequency) at the potential region, where the specific adsorption of chloride ions with partial charge transfer occurs.

Visualization of Alternating Triangular Domains of Charge Density Waves in 2H-NbSe_{2} by Scanning Tunneling Microscopy.

The charge density wave (CDW) state of 2H-NbSe_{2} features commensurate domains separated by domain boundaries accompanied by phase slips known as discommensurations. We have unambiguously visualized the structure of CDW domains using a displacement-field measurement algorithm on a scanning tunneling microscopy image. Each CDW domain is delimited by three vertices and three edges of discommensurations and is designated by a triplet of integers whose sum identifies the types of commensurate structure. The observed structure is consistent with the alternating triangular tiling pattern predicted by a phenomenological Landau theory. The domain shape is affected by crystal defects and also by topological defects in the CDW phase factor. Our results provide a foundation for a complete understanding of the CDW state and its relation to the superconducting state.

Scanning tunneling microscopy study of epitaxial Fe3GeTe2 monolayers on Bi2Te3

Introducing magnetism to the surface state of topological insulators, such as Bi2Te3, can lead to a variety of interesting phenomena. We use scanning tunneling microscopy (STM) to study a single quintuple layer (QL) of the van der Waals magnet Fe3GeTe2 (FGT) that is grown on Bi2Te3 via molecular beam epitaxy. STM topographic images show that the FGT grows as free-standing islands on Bi2Te3 and outwards from Bi2Te3 steps. Atomic resolution imaging shows triangular lattices of 390 ± 10 pm for FGT and 430 ± 10 pm for Bi2Te3, consistent with the respective bulk crystals. A moiré pattern is observed on FGT regions with a periodicity of 4.3 ± 0.4 nm that can be attributed solely to this lattice mismatch and thus indicates zero rotational misalignment. While most of the surface is covered by a single QL of the FGT, there are small double QL regions, as well as regions with distinct chemical terminations due to an incomplete QL. The most common partial QL surface termination is the FeGe layer, in which the top two atomic layers are missing. This termination has a distinctive electronic structure and a 3 x 3R30∘ reconstruction overlaid on the moiré pattern in STM images. Magnetic circular dichroism measurements confirm these thin FGT films are ferromagnetic with T C ∼190 K.

Epitaxial Growth of 2D Binary Phosphides.

Combinations of phosphorus with main group III, IV, and V elements are theoretically predicted to generate 2D binary phosphides with extraordinary properties and promising applications. However, experimental synthesis is significantly lacking. Here, a general approach for preparing 2D binary phosphides is reported using single crystalline surfaces containing the constituent element of target 2D materials as the substrate. To validate this, SnP3 and BiP, representing typical 2D binary phosphides, are successfully synthesized on Cu2Sn and bismuthene, respectively. Scanning tunneling microscopy imaging reveals a hexagonal pattern of SnP3 on Cu2Sn, while α-BiP can be epitaxially grown on the α-bismuthene domain on Cu2Sb. First-principles calculations reveal that the formation of SnP3 on Cu2Sn is associated with strong interface bonding and significant charge transfer, while α-BiP interacts weakly with α-bismuthene so that its semiconducting property is preserved. The study demonstrates an attractive avenue for the atomic-scale growth of binary 2D materials via substrate phase engineering.

Blue phosphorene on Au(111): theoretical, spectroscopic and diffraction analysis reveal the role of single Au adatoms.

In investigating the monoatomic layers of P, several stable two-dimensional (2D) allotropes have been theoretically predicted. Among them, single-layer blue phosphorus (BlueP) appears to deliver promising properties. After initial success, where the structure of BlueP triangular patches on Au(111) was conceived on the basis of scanning tunneling microscopy (STM) and density functional theory (DFT), the surface structure model was revisited multiple times with increasing accuracy and insight of theoretical calculations and experimental datasets. Interestingly, the quest for a reliable atomic structure model of BlueP on Au(111) turned out to be very contentious and challenging, particularly considering the possible incorporation of Au atoms in the 2D sheet of P. This article proposes an extended report on theoretical findings that can be extracted from DFT calculations of the orbital projected band structure and employed for an efficient comparison protocol between the calculations and experimental datasets obtained from angle-resolved photoemission spectroscopy (ARPES). The findings, together with experimental and simulated data from STM imaging and surface X-ray diffraction (SXRD), show a clear way to verify the presence and characterize the stabilizing effect of foreign atoms in 2D materials.

New insights into the structure of the Ag(111)-p(4 × 4)-O phase: high-resolution STM and DFT study.

The atomic structure of the Ag(111)-p(4 × 4)-O phase was reexamined with scanning tunneling microscopy (STM) and density functional theory. We discovered two different phases with the same (4 × 4) periodicity and demonstrated that the accepted Ag6 model is incompatible with high-resolution oxygen-sensitive STM images. Using bias dependencies of the STM images, we have shown that the p(4 × 4) phase is highly nonuniform, with local oxygen coverage varying from 1/8 ML up to 1/2 ML.

МОДЕЛИРОВАНИЕ АТОМНОГО СТРОЕНИЯ И ЭЛЕКТРОННОЙ СТРУКТУРЫ ПОВЕРХНОСТНОЙ ФАЗЫ SI(100)α-c(4×4)-B

surface phase were modeled using first principles approach. A new atomic model for α-c(4×4)-B structure was proposed. Total energy calculations showed that our atomic model is the most energetically favorable structure. The calculated spatial distribution of the electronic density for occupied states above Si(100)α-c(4×4)-B surface is in good agreement with known scanning tunneling microscopy images

Comprehensive characterization of polyproline tri-helix macrocyclic nanoscaffolds for predictive ligand positioning.

Multivalent ligands hold promise for enhancing avidity and selectivity to simultaneously target multimeric proteins, as well as potentially modulating receptor signaling in pharmaceutical applications. Essential for these manipulations are nanosized scaffolds that precisely control ligand display patterns, which can be achieved by using polyproline oligo-helix macrocyclic nanoscaffolds via selective binding to protein oligomers and cell surface receptors. This work focuses on synthesis and structural characterization of different-sized polyproline tri-helix macrocyclic (PP3M) scaffolds. Through combined analysis of circular dichroism (CD), small- and wide-angle X-ray scattering (SWAXS), electron spin resonance (ESR) spectroscopy, and molecular modeling, a non-coplanar tri-helix loop structure with partially crossover helix ends is elucidated. This structural model aligns well with scanning tunneling microscopy (STM) imaging. The present work enhances the precision of nanoscale organic synthesis, offering prospects for controlled ligand positioning on scaffolds. This advancement paves the way for further applications in nanomedicine through selective protein interaction, manipulation of cell surface receptor functions, and developments of more complex polyproline-based nanostructures.

Nano-protrusions in intercalated graphite: understanding the structural and electronic effects through DFT.

Complex phenomena characterize the intercalation of ions inside stratified crystals. Their comprehension is crucial in view of exploiting the intercalation mechanism to change the transport properties of the crystal or obtaining a fine control of crystal delamination. In particular, the relationship between the concentration and nature of intercalated ions and surface structural modifications of the host stratified crystal is still under debate. Here, we discuss a theoretical effort to provide a rationale for some structural changes observed on the highly oriented pyrolytic graphite (HOPG) surface after electrochemical treatment in perchloric and sulphuric acid solutions. The formation of the so-called nano-protrusions on the basal plane of intercalated graphite was previously observed with scanning tunneling microscopy (STM). In this work, we employed both STM and density functional theory (DFT) simulations to elucidate the physical and chemical mechanisms driving the emergence of these nano-protrusions. The DFT results show that, in a bilayer graphene system, the presence of a single ion can generate a nano-protrusion with 2.49 Å height and 21.27 Å width. In the deformed area, the C-C bond length is stretched by about 2.5% more than the normal graphene bond. These values are of the same dimensional scale as those reported in previous STM experimental results.25 However, the simulated STM images obtained by increasing the amount of intercalated ions per area suggest that the presence of more than one ion is needed for the deformation of the uppermost graphite layer during the early stages of intercalation. In contrast, in a multilayer graphene system, no significant surface deformation is detected when ions are intercalated between the third and fourth layers. Charge analysis indicates an altered distribution of the charges as a consequence of the intercalation. The charge transfer from graphene layers to the intercalated ions results in a surface layer more prone to oxidation.

Synthesis and properties of phosphorus nanostructures on Au(110).

Phosphorene, a semiconducting two-dimensional material, has recently attracted huge interest due to its potential applications in opto-electronics. The first attempts to synthesize phosphorene were based mainly on mechanical and chemical exfoliations. A few years later, different groups reported the synthesis of phosphorene using the molecular beam epitaxy process, which opened the way for research on physical properties. In this article, we report phosphorus growth on an Au(110) substrate via molecular beam epitaxy. The atomically resolved scanning tunneling microscopy images exhibit a self-assembled phosphorus-dimer structure, which is converted into phosphorus chains when increasing the phosphorus coverage. The chemical composition of the obtained structures is determined via Auger electron and X-ray photoelectron spectroscopies. Density functional theory calculations support the experimental findings.

A high density nanopore 3-triangulene kagome lattice.

Nanopore-containing two-dimensional materials have been explored for a wide range of applications including filtration, sensing, catalysis, energy storage and conversion. Triangulenes have recently been experimentally synthesized in a variety of sizes. In this regard, using these systems as building blocks, we theoretically examined 3-triangulene kagome crystals with inherent holes of ∼12 Å diameter and a greater density array of nanopores (≥1013 cm-2) compared to conventional 2D systems. The energetic, electronic, and transport properties of pristine and B/N-doped 3-triangulene kagome crystals were evaluated through a combination of density functional theory and non-equilibrium Green's function method. The simulated scanning tunneling microscopy images clearly capture electronic perturbation around the doped sites, which can be used to distinguish the pristine system from the doped systems. The viability of precisely controlling the band structure and transport properties by changing the type and concentration of doping atoms is demonstrated. The findings presented herein can potentially widen the applicability of these systems that combine unique electronic properties and intrinsically high-density pores, which can pave the way for the next generation of nanopore-based devices.

A Cu2(C6O6) metal-organic framework monolayer assembled on silicon carbide grown graphene exhibiting a metallic band structure.

We report the self-assembly of a monolayer metal-organic framework of Cu-benzenehexol (BHO) on a graphene/SiC substrate assisted by in situ Cu-catalyzed deprotonation reactions. The density functional theory calculations reveal that the free-standing framework is a semiconductor with a band gap of 0.485 eV. Interestingly, upon adsorption on the substrate, the Fermi level is up-shifted to the conduction band of the free-standing framework due to the n-doped graphene on SiC, while the other band structure features are largely preserved. The metallic nature corroborates the scanning tunneling microscopy images acquired near the Fermi level. This work demonstrates that the graphene substrate, which interacts weakly with the framework, can be used to tune the Fermi level of the metal-organic framework.

100% selective cyclotrimerization of acetylene to benzene on Ag(111).

Benzene, a high-volume chemical, is produced from larger molecules by inefficient and environmentally harmful processes. Recent changes in hydrocarbon feedstocks from oil to gas motivate research into small molecule upgrading. For example, the cyclotrimerization of acetylene reaction has been demonstrated on Pd, Pd alloy, and Cu surfaces and catalysts, but they are not 100% selective to benzene. We discovered that acetylene can be converted to benzene with 100% selectivity on the Ag(111) surface. Our temperature programmed desorption experiments reveal a threshold acetylene surface coverage of ∼one monolayer, above which benzene is formed. Furthermore, additional layers of acetylene increase the amount of benzene produced while retaining 100% selectivity. Our scanning tunneling microscopy images show that acetylene prefers square packing on the Ag(111) surface at low coverages, which converts to hexagonal packing when acetylene multilayers are present. Within this denser layer, features consistent with the proposed C4 intermediates of the cyclotrimerization process are observed. Density functional theory calculations demonstrate that the barrier for forming the crucial C4 intermediate generally decreases as acetylene multilayers are formed because the multilayer interacts more strongly with the surface in the transition state than in the initial state. Given that acetylene desorbs from Ag(111) at ∼90 K, the C4 intermediate on the pathway to benzene must be formed below this temperature, implying that if Ag-based heterogeneous catalysts can be run at sufficiently high pressure and low enough temperature, efficient and selective trimerization of acetylene to benzene may be possible.

Phase Transitions of Naphthalene-2,3-carbonitride Steered by Solvent Effects and Metal Ion Concentration Variation.

The delicate regulation of structural phase transition can provide advanced approaches for fabricating desired and well-organized nanoarchitectures on surfaces. Introduction of metal ions into pure organic systems can facilitate the phase transition from hydrogen-bonded structures to metal-organic structures by coordinating with organic molecules. However, it remains a challenge to attain a phase transition dominated by variable metal coordination configurations through adjustment of the metal ion concentration. Herein, we report the phase transitions of naphthalene-2,3-carbonitride (2,3-DCN) molecules on highly oriented pyrolytic graphite (HOPG) under varying solvents and Cu2+ ion concentrations. By integrating data from scanning tunneling microscopy imaging and density functional theory calculations, it is demonstrated that phase transitions of 2,3-DCN occur through forming diverse coordination configurations where Cu2+ ions can coordinate with 2,3-DCN and 1-nonanoic acid or Cl- ions to form different ligand components with a coordination number of 4 when varying the molar ratios of 2,3-DCN to Cu2+ ion in the 1-nonanoic acid solvent. However, in the case of 1-heptanoic acid as a solvent, the self-assembly structure of 2,3-DCN only changes via the alteration of hydrogen bonding sites and Cu2+ ions do not coordinate with 2,3-DCN molecules. These findings provide valuable insights into the coordination behavior of metal ions in different solvents.

(Invited) Atomic Imaging and Device Characterization of Molecularly Thin 2D Hybrid Perovskites

2D Organic-Inorganic Hybrid perovskites (OIHPs) possess alternating layers of organic molecules and inorganic quantum wells. By tuning the interaction between organic and inorganic layers, very interesting properties can be introduced. The successful isolation of hybrid perovskite monolayers with clean and flat surfaces are particularly suitable for atomic structure characterization and optoelectronic device fabrication. In this talk, I will present recent results on the excitonic properties and atomic structure of molecularly thin OIHPs1,2. We found that a reversible shift in excitonic energies can be induced upon laser irradiation in large-sized 2D hybrid perovskite monolayers which is attributed to the reversible structural reorientation of the surface BA cations in the easily deformable lattice3. The photodetection performance of monolayer, bilayer and thicker OIHPs were compared. The internal quantum efficiency was measured to be 34% for a monolayer (BA)2(MA)3Pb4I13 and 19% for the bulk crystal. In addition, 2D heterostructures of molecularly thin OIHPs/graphene were constructed which exhibited a lower barrier than gold for carrier injection, enabling applications in field effect transistors (FETs)4. Electron tunneling occurs across the interface of organic molecular layers on 2D perovskite and graphene, while photoinduced charge transfer occurs at femtosecond timescale (~50 fs).Resolving the atomic structure of 2D hybrid perovskite is a challenging task because it is easily damaged by electron beam. Here we use scanning tunneling microscopy (STM) & Qplus AFM to directly visualize surface octahedral tilt in freshly exfoliated 2D Ruddlesden-Popper perovskites (RPPs)5. The experimentally determined octahedral tilts from n = 1 to n = 4 RPPs from STM images are found to agree very well with out-of-plane surface octahedral tilts predicted by density functional theory calculations. The surface-enhanced octahedral tilt is correlated to excitonic redshift observed in photoluminescence (PL) and promotes Rashba spin splitting for n > 1. Our studies demonstrate a protocol to investigate structure-property correlations in low dimensional 2D OIHPs, which will pave the way to better material design and device performance.References Leng, W. Fu, Y. Liu, M. Chhowalla & KP Loh* “From Bulk to Molecularly Thin Hybrid Perovskites” Nature Reviews Materials , 5, 482-500 (2020).Zhao, KP Loh, K. Leng* “Organic-inorganic hybrid perovskites and their heterostructures” Matter , 5, 4153-4169 (2022).Leng, I. Abdelwaha, I. Verzhbitskiy, M. Telychko, L. Chu, W. Fu, X. Chi, N. Guo, Z. Chen, Z. Chen, C. Zhang, Q. Xu, J. Lu, M. Chhowalla, G. Eda, KP Loh* “Molecularly thin two-dimensional hybrid perovskites with tunable optoelectronic properties due to reversible surface relaxation” Nature Materials , 17, 908-914 (2018).Leng, L. Wang, Y. Shao, I. Abdelwahab, G. Grinblat, I. Verzhbitskiy, Y. Cai, X. Chi, W. Fu, P. Song, G. Eda, S. A. Maier & KP Loh* “Electron Tunneling at the Molecularly Thin 2D Perovskite and Graphene Van der Waals Interface” Nature Communications , 11, 5483 (2020).Y Shao, W. Gao, H. Yan, R. Li, I. Abdelwahab, L. Zhuang, W. Fu, SP Lau, SF YU, Y. Cai, KP Loh, K. Leng* “Unlocking Surface Octahedral Tilt in Two-dimensional Ruddlesden-Popper Perovskites” Nature Communications , 13, 138 (2022). AcknowledgementK.L. would like to acknowledge the Research Grants Council of the Hong Kong Special Administrative Region, China (Project No. PolyU15305221 for GRF project funded in 2021/22 Exercise and Project No. PolyU25305222 for ECS project funded in 2022/23 Exercise).

Atomic-scale view of the photoinduced structural transition to form sp3-like bonded order phase in graphite

Photoexcitation of solids often induces structural phase transitions between different ordered phases, some of which are unprecedented and thermodynamically inaccessible. The phenomenon, known as photoinduced structural phase transition (PSPT), is of significant interest to the technological progress of advanced materials processing and the fundamental understanding of material physics. Here, we applied scanning tunnelling microscopy (STM) to directly characterise the primary processes of the PSPT in graphite to form a sp3-like carbon nano-phase called diaphite. The primary challenge was to provide microscopic views of the graphite-to-diaphite transition. On an atomic scale, STM imaging of the photoexcited surface revealed the nucleation and proliferation processes of the diaphite phase; these were governed by the formation of sp3-like interlayer bonds. The growth mode of the diaphite phase depends strongly on the photon energy of excitation laser light. Different dynamical pathways were proposed to explain the formation of a sp3-like interlayer bonding. Potential mechanisms for photon-energy-dependent growth were examined based on the experimental and calculated results. The present results provide insight towards realising optical control of sp2-to-sp3 conversions and the organisation of nanoscale structures in graphene-related materials.

Validating the Use of Conductive Atomic Force Microscopy for Defect Quantification in 2D Materials.

Defects significantly affect the electronic, chemical, mechanical, and optical properties of two-dimensional (2D) materials. Thus, it is critical to develop a method for convenient and reliable defect quantification. Scanning transmission electron microscopy (STEM) and scanning tunneling microscopy (STM) possess the required atomic resolution but have practical disadvantages. Here, we benchmark conductive atomic force microscopy (CAFM) by a direct comparison with STM in the characterization of transition metal dichalcogenides (TMDs). The results conclusively demonstrate that CAFM and STM image identical defects, giving results that are equivalent both qualitatively (defect appearance) and quantitatively (defect density). Further, we confirm that CAFM can achieve single-atom resolution, similar to that of STM, on both bulk and monolayer samples. The validation of CAFM as a facile and accurate tool for defect quantification provides a routine and reliable measurement that can complement other standard characterization techniques.

In situ surface evolution dynamics of external-electric-field-triggered structural oscillation on Au(111)

Surface nanostructures serve as an essential role in determining intrinsic physical features and device performance in solid materials. Here, this work systematically investigates the surface dynamical evolution at the nanoscale on Au(111) induced by a “tip-to-surface” external electric field through a scanning tunneling microscope (STM). The Au(111) steps exhibit a “compact to fractal” reconstruction under a relatively high electric field, in which the transition is strengthened with increasing the applied electric field. Inversely, a “fractal to compact” morphological transition enables to be self-triggered at Au(111) surface steps upon a normal STM imaging electric field (very low). These two reversible structural changes are attributed to the diffusion-limited aggregation mechanism where the diffusion barriers were quantified as 0.64–0.75 eV varied with the regularity in step edges. In addition, we further simulate a “terrace-edge-kink” model to trace the effect of atomic coordination on structural transition, determining the surface step edge stability. This study presents insight into morphological and structural transformation at surface steps induced by variant external electric fields, establishing a deep understanding in the nature of surface evolution dynamics.

Remote regulation on the hydration sites of adenine molecules via derivatization

Hydration, as a ubiquitous and vital phenomenon in nature, has attracted great attention in the field of surface science concerning the fundamental interactions between water and organic molecules. However, the role of functional group derivatization is still elusive in terms of its potential impact on hydration. By the combination of high-resolution scanning tunneling microscopy imaging and density functional theory calculations, the hydration of 9mA molecules was realized on Au(111) in real space, forming 9mA–H2O–9mA structures. In comparison with the hydration of adenine molecules, methyl derivatization is experimentally found to remotely regulate the hydration sites from the imidazole ring to the pyrimidine ring and is further theoretically revealed to allow intramolecular electron redistribution and, therefore, steer the priority of the hydration sites. These results provide sub-molecular understandings of the relationship between derivatization and hydration, which would shed light on the regulation of hydration processes in chemically and biologically related systems.